Current Insight into Traditional and Modern Methods in Fungal Diversity Estimates
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Title
Current Insight into Traditional and Modern Methods in Fungal Diversity Estimates
Authors
Keywords
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Journal
Journal of Fungi
Volume 8, Issue 3, Pages 226
Publisher
MDPI AG
Online
2022-02-25
DOI
10.3390/jof8030226
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- Potential sources of microbial colonizers in an initial soil ecosystem after retreat of an alpine glacier
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- How diverse is the lichenized fungal family Trypetheliaceae (Ascomycota: Dothideomycetes)? A quantitative prediction of global species richness
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- Endophytic bacterial and fungal microbiota in sprouts, roots and stems of rice ( Oryza sativa L.)
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- Global diversity and phylogeny of the Phellinus igniarius complex (Hymenochaetales, Basidiomycota) with the description of five new species
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- A phylum-level phylogenetic classification of zygomycete fungi based on genome-scale data
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- Disentangling Phialophora section Catenulatae: disposition of taxa with pigmented conidiophores and recognition of a new subclass, Sclerococcomycetidae (Eurotiomycetes)
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- Pseudopestalotiopsis ignota and Ps. camelliae spp. nov. associated with grey blight disease of tea in China
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- Local-scale spatial structure and community composition of orchid mycorrhizal fungi in semi-natural grasslands
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- Unraveling two East Asian species of Clinoconidium (Cryptobasidiaceae)
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- DNA-metabarcoding uncovers the diversity of soil-inhabiting fungi in the tropical island of Puerto Rico
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- Fungal diversity and seasonal succession in ash leaves infected by the invasive ascomycete Hymenoscyphus fraxineus
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- Arbuscular mycorrhizal interactions of mycoheterotrophic Thismia are more specialized than in autotrophic plants
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- Resolution of morphology-based taxonomic delusions: Acrocordiella, Basiseptospora, Blogiascospora, Clypeosphaeria, Hymenopleella, Lepteutypa, Pseudapiospora, Requienella, Seiridium and Strickeria
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- Novel fungi from an ancient niche: cercosporoid and related sexual morphs on ferns
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- Specific Microbial Communities Associate with the Rhizosphere of Welwitschia mirabilis, a Living Fossil
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- Ribosomal DNA and Plastid Markers Used to Sample Fungal and Plant Communities from Wetland Soils Reveals Complementary Biotas
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- The forgotten Calonectria collection: Pouring old wine into new bags
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- Phellinotus, a new neotropical genus in the Hymenochaetaceae (Basidiomycota, Hymenochaetales)
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- Neopestalotiopsis vitis sp. nov. causing grapevine leaf spot in China
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- Patterns of natural fungal community assembly during initial decay of coniferous and broadleaf tree logs
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- Bacterial Community Succession in Pine-Wood Decomposition
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- Microbial Community Structure and Function of Soil Following Ecosystem Conversion from Native Forests to Teak Plantation Forests
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- Soil pH is a Key Determinant of Soil Fungal Community Composition in the Ny-Ålesund Region, Svalbard (High Arctic)
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- Fungal and Prokaryotic Activities in the Marine Subsurface Biosphere at Peru Margin and Canterbury Basin Inferred from RNA-Based Analyses and Microscopy
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- Unexpectedly High Beta-Diversity of Root-Associated Fungal Communities in the Bolivian Andes
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- Fine Spatial Scale Variation of Soil Microbial Communities under European Beech and Norway Spruce
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- Venturia chinensis sp. nov., a new venturialean ascomycete from Khingan Mountains
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- Introducing BASE: the Biomes of Australian Soil Environments soil microbial diversity database
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- Characterization of Two New Records of Mucoralean Species Isolated from Gut of Soldier Fly Larva in Korea
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- Generic names in Magnaporthales
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- Overlooked competing asexual and sexually typified generic names of Ascomycota with recommendations for their use or protection
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- Distinctive Feature of Microbial Communities and Bacterial Functional Profiles in Tricholoma matsutake Dominant Soil
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- Environmental and Geographical Factors Structure Soil Microbial Diversity in New Caledonian Ultramafic Substrates: A Metagenomic Approach
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- Divergent habitat filtering of root and soil fungal communities in temperate beech forests
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- Identifying and Naming Plant-Pathogenic Fungi: Past, Present, and Future
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- Species Richness and Adaptation of Marine Fungi from Deep-Subseafloor Sediments
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- Profiling Microbial Communities in Manganese Remediation Systems Treating Coal Mine Drainage
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- Re-classification of the causal agent of white grain disorder on wheat as three separate species of Eutiarosporella
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- Assessment of Boeremia exigua var. rhapontica, as a biological control agent of Russian knapweed (Rhaponticum repens)
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- Neglected role of fungal community composition in explaining variation in wood decay rates
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- Microbial activity in forest soil reflects the changes in ecosystem properties between summer and winter
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- Morphological and molecular characterisation of Diaporthe species associated with grapevine trunk disease in China
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- Meliolales
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- Phylogeny, divergence time estimation, and biogeography of the genus Heterobasidion (Basidiomycota, Russulales)
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- Anthostomella is polyphyletic comprising several genera in Xylariaceae
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- Towards unraveling relationships in Xylariomycetidae (Sordariomycetes)
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- Linking molecular deadwood-inhabiting fungal diversity and community dynamics to ecosystem functions and processes in Central European forests
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- Fungal diversity notes 111–252—taxonomic and phylogenetic contributions to fungal taxa
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- Plant-associated fungal communities in the light of meta’omics
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- Towards a natural classification and backbone tree for Sordariomycetes
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- Diversity and movement of indoor Alternaria alternata across the mainland USA
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- Stochastic distribution of small soil eukaryotes resulting from high dispersal and drift in a local environment
- (2015) Mohammad Bahram et al. ISME Journal
- Tree diversity and species identity effects on soil fungi, protists and animals are context dependent
- (2015) Leho Tedersoo et al. ISME Journal
- Vertical distribution of the soil microbiota along a successional gradient in a glacier forefield
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- Dynamics of the worldwide number of fungi with emphasis on fungal diversity in China
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- Fulvifomes imbricatus and F. thailandicus (Hymenochaetales, Basidiomycota): two new species from Thailand based on morphological and molecular evidence
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- Changes in fungal communities along a boreal forest soil fertility gradient
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- Strong altitudinal partitioning in the distributions of ectomycorrhizal fungi along a short (300 m) elevation gradient
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- Application of the consolidated species concept to Cercospora spp. from Iran
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- Microbial diversity at Mitchell Peninsula, Eastern Antarctica: a potential biodiversity “hotspot”
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- Soil carbon content drives the biogeographical distribution of fungal communities in the black soil zone of northeast China
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- Resolving the Phoma enigma
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- Phylogenetic classification of yeasts and related taxa within Pucciniomycotina
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- Relationship between soil fungal diversity and temperature in the maritime Antarctic
- (2015) Kevin K. Newsham et al. Nature Climate Change
- Diversity and distribution of lichen-associated fungi in the Ny-Ålesund Region (Svalbard, High Arctic) as revealed by 454 pyrosequencing
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- High richness of ectomycorrhizal fungi and low host specificity in a coastal sand dune ecosystem revealed by network analysis
- (2015) Alice Roy-Bolduc et al. Ecology and Evolution
- Phylogenetic Relationships among Species of Phellinus sensu stricto, Cause of White Trunk Rot of Hardwoods, from Northern North America
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- Forest Management Type Influences Diversity and Community Composition of Soil Fungi across Temperate Forest Ecosystems
- (2015) Kezia Goldmann et al. Frontiers in Microbiology
- Shotgun metagenomes and multiple primer pair-barcode combinations of amplicons reveal biases in metabarcoding analyses of fungi
- (2015) Leho Tedersoo et al. MycoKeys
- Recommended names for pleomorphic genera in Dothideomycetes
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- Ganoderma species, including new taxa associated with root rot of the iconic Jacaranda mimosifolia in Pretoria, South Africa
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- Taxonomic Revision and Examination of Ecological Transitions of the Lyophyllaceae (Basidiomycota, Agaricales) Based on a Multigene Phylogeny
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- Bacterial and Fungal Communities in a Degraded Ombrotrophic Peatland Undergoing Natural and Managed Re-Vegetation
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- Forestry impacts on the hidden fungal biodiversity associated with bryophytes
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- In-depth analyses of deep subsurface sediments using 454-pyrosequencing reveals a reservoir of buried fungal communities at record-breaking depths
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- New species and new records of Meliolaceae from Panama
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- Revision of Phaeosphaeriaceae
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- Naming and outline of Dothideomycetes–2014 including proposals for the protection or suppression of generic names
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- One stop shop: backbones trees for important phytopathogenic genera: I (2014)
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- The complex of Diplodia species associated with Fraxinus and some other woody hosts in Italy and Portugal
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- A combined mitochondrial and nuclear multilocus phylogeny of the genus Phytophthora
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- Three new species of Tilletia on Eriachne from north-western Australia
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- Temporal patterns of orchid mycorrhizal fungi in meadows and forests as revealed by 454 pyrosequencing
- (2014) Jane Oja et al. NEW PHYTOLOGIST
- Community assembly of ectomycorrhizal fungi along a subtropical secondary forest succession
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- Carbon sequestration is related to mycorrhizal fungal community shifts during long-term succession in boreal forests
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- Periconianone A, a New 6/6/6 Carbocyclic Sesquiterpenoid from Endophytic Fungus Periconia sp. with Neural Anti-inflammatory Activity
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- A phylogenetic study of Dothiorella and Spencermartinsia species associated with woody plants in Iran, New Zealand, Portugal and Spain
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- Changes in plant community composition and reduced precipitation have limited effects on the structure of soil bacterial and fungal communities present in a semiarid grassland
- (2014) Theresa A. McHugh et al. PLANT AND SOIL
- Spatial Segregation and Aggregation of Ectomycorrhizal and Root-Endophytic Fungi in the Seedlings of Two Quercus Species
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- The Contribution of DNA Metabarcoding to Fungal Conservation: Diversity Assessment, Habitat Partitioning and Mapping Red-Listed Fungi in Protected Coastal Salix repens Communities in the Netherlands
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- Comparison and Validation of Some ITS Primer Pairs Useful for Fungal Metabarcoding Studies
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- Endemism and functional convergence across the North American soil mycobiome
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- A single macrolichen constitutes hundreds of unrecognized species
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- Global diversity and geography of soil fungi
- (2014) L. Tedersoo et al. SCIENCE
- A polyphasic taxonomy of Daldinia (Xylariaceae)1
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- The genus Bipolaris
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- Resolving the polyphyletic nature of Pyricularia (Pyriculariaceae)
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- (2304) Proposal to conserve the name Diaporthe eres against twenty-one competing names (Ascomycota: Diaporthales: Diaporthaceae)
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- Phyllosticta species from banana (Musa sp.) in Chongqing and Guizhou Provinces, China
- (2014) SHI-PING WU et al. Phytotaxa
- A re-assessment of Elsinoaceae (Myriangiales, Dothideomycetes)
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- One hundred and seventy-five new species of Graphidaceae: closing the gap or a drop in the bucket?
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- A metagenomics-based approach to the top-down effect on the detritivore food web: a salamanders influence on fungal communities within a deciduous forest
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- Benthic protists and fungi of Mediterranean deep hypsersaline anoxic basin redoxcline sediments
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- Online identification guides for Australian smut fungi (Ustilaginomycotina) and rust fungi (Pucciniales)
- (2014) Roger G. Shivas et al. IMA Fungus
- New Phaeoacremonium species isolated from sandalwood trees in western Australia
- (2014) David Gramaje et al. IMA Fungus
- recommendations on generic names competing for use in Leotiomycetes (Ascomycota)
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- Diversity and cold adaptation of culturable endophytic fungi from bryophytes in the Fildes Region, King George Island, maritime Antarctica
- (2013) Tao Zhang et al. FEMS MICROBIOLOGY LETTERS
- The ApMat marker can resolve Colletotrichum species: a case study with Mangifera indica
- (2013) Gunjan Sharma et al. FUNGAL DIVERSITY
- Families of Dothideomycetes
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- Phylogenetic analyses of RPB1 and RPB2 support a middle Cretaceous origin for a clade comprising all agriculturally and medically important fusaria
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- Strong coupling of plant and fungal community structure across western Amazonian rainforests
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- A phylogeny of the highly diverse cup-fungus family Pyronemataceae (Pezizomycetes, Ascomycota) clarifies relationships and evolution of selected life history traits
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- Comprehensive phylogenetic analysis of the genus Golovinomyces (Ascomycota: Erysiphales) reveals close evolutionary relationships with its host plants
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- The sections of Alternaria: formalizing species-group concepts
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- Fomitiporia neotropica, a new species from South America evidenced by multilocus phylogenetic analyses
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- Fulvifomes hainanensis sp. nov. and F. indicus comb. nov. (Hymenochaetales, Basidiomycota) evidenced by a combination of morphology and phylogeny
- (2013) Li-Wei Zhou MYCOSCIENCE
- Phylogenetic systematics of the Gigasporales
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- Taxonomic revision of Ustilago, Sporisorium and Macalpinomyces
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- DNA barcoding in Mucorales: an inventory of biodiversity
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- Deep Sequencing of Subseafloor Eukaryotic rRNA Reveals Active Fungi across Marine Subsurface Provinces
- (2013) William Orsi et al. PLoS One
- Habitat and Host Indicate Lineage Identity in Colletotrichum gloeosporioides s.l. from Wild and Agricultural Landscapes in North America
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- Novel Evolutionary Lineages Revealed in the Chaetothyriales (Fungi) Based on Multigene Phylogenetic Analyses and Comparison of ITS Secondary Structure
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- Studies on diversity of soil microfungi in the Hornsund area, Spitsbergen
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- Detection of the horizontal spatial structure of soil fungal communities in a natural forest
- (2013) Kohmei Kadowaki et al. POPULATION ECOLOGY
- N2O emission from cropland field soil through fungal denitrification after surface applications of organic fertilizer
- (2013) Wei Wei et al. SOIL BIOLOGY & BIOCHEMISTRY
- Species concepts in Cercospora: spotting the weeds among the roses
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- Phylogenetic lineages in the Botryosphaeriales: a systematic and evolutionary framework
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- Alternaria redefined
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- The Botryosphaeriaceae: genera and species known from culture
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- Sizing up Septoria
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- Metagenomic analysis and metabolite profiling of deep–sea sediments from the Gulf of Mexico following the Deepwater Horizon oil spill
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- Genera in Bionectriaceae, Hypocreaceae, and Nectriaceae (Hypocreales) proposed for acceptance or rejection
- (2013) Amy Y. Rossman et al. IMA Fungus
- A without-prejudice list of generic names of fungi for protection under the international Code of nomenclature for algae, fungi, and plants
- (2013) Paul M. Kirk et al. IMA Fungus
- Ilyonectria black foot rot associated with Proteaceae
- (2012) Lorenzo Lombard et al. AUSTRALASIAN PLANT PATHOLOGY
- New primers to amplify the fungal ITS2 region - evaluation by 454-sequencing of artificial and natural communities
- (2012) Katarina Ihrmark et al. FEMS MICROBIOLOGY ECOLOGY
- A phylogenetic and taxonomic re-evaluation of the Bipolaris - Cochliobolus - Curvularia Complex
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- A multi-locus backbone tree for Pestalotiopsis, with a polyphasic characterization of 14 new species
- (2012) Sajeewa S. N. Maharachchikumbura et al. FUNGAL DIVERSITY
- Cyphellophora and its relatives in Phialophora: biodiversity and possible role in human infection
- (2012) Peiying Feng et al. FUNGAL DIVERSITY
- Fungal diversity in deep-sea sediments revealed by culture-dependent and culture-independent approaches
- (2012) Purnima Singh et al. Fungal Ecology
- Significant and persistent impact of timber harvesting on soil microbial communities in Northern coniferous forests
- (2012) Martin Hartmann et al. ISME Journal
- Amplicon-pyrosequencing-based detection of compositional shifts in bryophyte-associated fungal communities along an elevation gradient
- (2012) Marie L. Davey et al. MOLECULAR ECOLOGY
- Application of the Apn2/MAT locus to improve the systematics of the Colletotrichum gloeosporioides complex: an example from coffee (Coffea spp.) hosts
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- The Caloscyphaceae (Pezizomycetes, Ascomycota), with a new genus
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- Entomophthoromycota: a new phylum and reclassification for entomophthoroid fungi
- (2012) Richard A. Humber MYCOTAXON
- Seasonal trends in the biomass and structure of bryophyte-associated fungal communities explored by 454 pyrosequencing
- (2012) Marie L. Davey et al. NEW PHYTOLOGIST
- First Report of Limonomyces roseipellis Causing Pink Patch on Bermudagrass in South China
- (2012) W. Zhang et al. PLANT DISEASE
- Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi
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- The Fungi: 1, 2, 3 … 5.1 million species?
- (2011) Meredith Blackwell AMERICAN JOURNAL OF BOTANY
- MALDI-TOF MS in microbiological diagnostics—identification of microorganisms and beyond (mini review)
- (2011) Andreas Wieser et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- Molecular evidence that deep-branching fungi are major fungal components in deep-sea methane cold-seep sediments
- (2011) Takahiko Nagahama et al. ENVIRONMENTAL MICROBIOLOGY
- Multi-gene analysis and morphology reveal novel Ilyonectria species associated with black foot disease of grapevines
- (2011) Ana Cabral et al. Fungal Biology
- Fusarium burgessii sp. nov. representing a novel lineage in the genus Fusarium
- (2011) Matthew Hurst Laurence et al. FUNGAL DIVERSITY
- A molecular, morphological and ecological re-appraisal of Venturiales―a new order of Dothideomycetes
- (2011) Ying Zhang et al. FUNGAL DIVERSITY
- Pestalotiopsis—morphology, phylogeny, biochemistry and diversity
- (2011) Sajeewa S. N. Maharachchikumbura et al. FUNGAL DIVERSITY
- Ascomycete phylotypes recovered from a Gulf of Mexico methane seep are identical to an uncultured deep-sea fungal clade from the Pacific
- (2011) Andrew David Thaler et al. Fungal Ecology
- A new lichenicolous teleomorph is related to plant pathogens in Laetisaria and Limonomyces (Basidiomycota, Corticiales)
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- Cylindrocarpon root rot: multi-gene analysis reveals novel species within the Ilyonectria radicicola species complex
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- Glomeromycota: two new classes and a new order
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- Molecular Diversity of Fungal Phylotypes Co-Amplified Alongside Nematodes from Coastal and Deep-Sea Marine Environments
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- Progress in molecular and morphological taxon discovery in Fungi and options for formal classification of environmental sequences
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- Calongea, a new genus of truffles in the Pezizaceae (Pezizales)
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- A Molecular Phylogeny-Based Taxonomy of the GenusRhizopus
- (2010) Ayumi ABE et al. BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY
- Comparative analysis between protist communities from the deep-sea pelagic ecosystem and specific deep hydrothermal habitats
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- Marine subsurface eukaryotes: the fungal majority
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- Marine culturable yeasts in deep-sea hydrothermal vents: species richness and association with fauna
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- Phylogenetic diversity of culturable fungi from the deep-sea sediments of the Central Indian Basin and their growth characteristics
- (2010) Purnima Singh et al. FUNGAL DIVERSITY
- Fungi—an unusual source for cosmetics
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- Fungal diversity in deep-sea sediments – the presence of novel fungal groups
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- Comparative metagenomics of bathypelagic plankton and bottom sediment from the Sea of Marmara
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- Fungal Community Analysis in the Deep-Sea Sediments of the Central Indian Basin by Culture-Independent Approach
- (2010) Purnima Singh et al. MICROBIAL ECOLOGY
- Erythricium atropatanum sp. nov. (Corticiales) from Iran, based on morphological and molecular data
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- Delimitation of central and northern European species of the Phellinus igniarius group (Basidiomycota, Hymenochaetales) based on analysis of ITS and translation elongation factor 1 alpha DNA sequences
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- Molecular phylogeny and taxonomy of Eurasian Neoerysiphe species infecting Asteraceae and Geranium
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