Targeted ITS1 sequencing unravels the mycodiversity of deep‐sea sediments from the Gulf of Mexico

Sediment accumulation patterns on the slopes and abyssal plain of the southern Gulf of Mexico

(2019) Misael Díaz-Asencio et al.   DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS

Factors influencing aquatic and terrestrial bacterial community assembly

(2019) Silke Langenheder et al.   Environmental Microbiology Reports

Fungi in the Marine Environment: Open Questions and Unsolved Problems

(2019) Anthony Amend et al.   mBio

Fungal diversity in deep-sea sediments of a hydrothermal vent system in the Southwest Indian Ridge

(2018) Wei Xu et al.   DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS

Cultivable Fungal Diversity in Deep-Sea Sediment of the East Pacific Ocean

(2018) Xu Wei et al.   GEOMICROBIOLOGY JOURNAL

Environmental factors driving fungal distribution in freshwater lake sediments across the Headwater Region of the Yellow River, China

(2018) Jianqing Tian et al.   Scientific Reports

Benthic deep-sea fungi in submarine canyons of the Mediterranean Sea

(2018) Giulio Barone et al.   PROGRESS IN OCEANOGRAPHY

Fungal communities in Scandinavian lakes along a longitudinal gradient

(2017) Maryia Khomich et al.   Fungal Ecology

Beneficial Microorganisms for Corals (BMC): Proposed Mechanisms for Coral Health and Resilience

(2017) Raquel S. Peixoto et al.   Frontiers in Microbiology

Fungal community analysis in the deep-sea sediments of the Pacific Ocean assessed by comparison of ITS, 18S and 28S ribosomal DNA regions

(2016) Wei Xu et al.   DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS

Exploring fungal diversity in deep-sea sediments from Okinawa Trough using high-throughput Illumina sequencing

(2016) Xiao-Yong Zhang et al.   DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS

Global biogeography of marine fungi is shaped by the environment

(2016) Kaho H. Tisthammer et al.   Fungal Ecology

VSEARCH: a versatile open source tool for metagenomics

(2016) Torbjørn Rognes et al.   PeerJ

Species Richness and Adaptation of Marine Fungi from Deep-Subseafloor Sediments

(2015) Vanessa Rédou et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Depth shapes α- and β-diversities of microbial eukaryotes in surficial sediments of coastal ecosystems

(2015) Jun Gong et al.   ENVIRONMENTAL MICROBIOLOGY

A Comprehensive, Automatically Updated Fungal ITS Sequence Dataset for Reference-Based Chimera Control in Environmental Sequencing Efforts

(2015) R. Henrik Nilsson et al.   MICROBES AND ENVIRONMENTS

Molecular diversity and distribution of marine fungi across 130 European environmental samples

(2015) Thomas A. Richards et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Shotgun metagenomes and multiple primer pair-barcode combinations of amplicons reveal biases in metabarcoding analyses of fungi

(2015) Leho Tedersoo et al.   MycoKeys

In-depth analyses of deep subsurface sediments using 454-pyrosequencing reveals a reservoir of buried fungal communities at record-breaking depths

(2014) Vanessa Rédou et al.   FEMS MICROBIOLOGY ECOLOGY

High Fungal Diversity and Abundance Recovered in the Deep-Sea Sediments of the Pacific Ocean

(2014) Wei Xu et al.   MICROBIAL ECOLOGY

ITS1: a DNA barcode better than ITS2 in eukaryotes?

(2014) Xin-Cun Wang et al.   Molecular Ecology Resources

Parsing ecological signal from noise in next generation amplicon sequencing

(2014) Nhu H. Nguyen et al.   NEW PHYTOLOGIST

Comparison and Validation of Some ITS Primer Pairs Useful for Fungal Metabarcoding Studies

(2014) Michiel Op De Beeck et al.   PLoS One

Gene expression in the deep biosphere

(2013) William D. Orsi et al.   NATURE

Deep Sequencing of Subseafloor Eukaryotic rRNA Reveals Active Fungi across Marine Subsurface Provinces

(2013) William Orsi et al.   PLoS One

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Utilizing ITS1 and ITS2 to study environmental fungal diversity using pyrosequencing

(2012) Cécile Monard et al.   FEMS MICROBIOLOGY ECOLOGY

Fungal diversity in deep-sea sediments revealed by culture-dependent and culture-independent approaches

(2012) Purnima Singh et al.   Fungal Ecology

betapart: an R package for the study of beta diversity

(2012) Andrés Baselga et al.   Methods in Ecology and Evolution

Marine Fungi: Their Ecology and Molecular Diversity

(2011) Thomas A. Richards et al.   Annual Review of Marine Science

Molecular evidence that deep-branching fungi are major fungal components in deep-sea methane cold-seep sediments

(2011) Takahiko Nagahama et al.   ENVIRONMENTAL MICROBIOLOGY

Ascomycete phylotypes recovered from a Gulf of Mexico methane seep are identical to an uncultured deep-sea fungal clade from the Pacific

(2011) Andrew David Thaler et al.   Fungal Ecology

Microbial Ecology of the Dark Ocean above, at, and below the Seafloor

(2011) B. N. Orcutt et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Assessment of fungal diversity in deep-sea sediments by multiple primer approach

(2011) Purnima Singh et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Marine subsurface eukaryotes: the fungal majority

(2010) Virginia P. Edgcomb et al.   ENVIRONMENTAL MICROBIOLOGY

Phylogenetic diversity of culturable fungi from the deep-sea sediments of the Central Indian Basin and their growth characteristics

(2010) Purnima Singh et al.   FUNGAL DIVERSITY

Fungal diversity in deep-sea sediments – the presence of novel fungal groups

(2010) Yuriko Nagano et al.   Fungal Ecology

Fungal Community Analysis in the Deep-Sea Sediments of the Central Indian Basin by Culture-Independent Approach

(2010) Purnima Singh et al.   MICROBIAL ECOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Fungal Diversity in Deep-Sea Hydrothermal Ecosystems

(2009) T. Le Calvez et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Diversity of culturable marine filamentous fungi from deep-sea hydrothermal vents

(2009) Gaëtan Burgaud et al.   ENVIRONMENTAL MICROBIOLOGY

Fungal diversity in oxygen-depleted regions of  the Arabian Sea revealed by targeted environmental sequencing combined with cultivation

(2009) Cathrine S. Jebaraj et al.   FEMS MICROBIOLOGY ECOLOGY

A comparison of methods for total community DNA preservation and extraction from various thermal environments

(2008) Kendra R. Mitchell et al.   JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY

Marine yeasts—a review

(2008) Sreedevi N. Kutty et al.   YEAST