Microbiome Dynamics Associated With the Atacama Flowering Desert

Field study reveals core plant microbiota and relative importance of their drivers

(2018) Kelly Hamonts et al.   ENVIRONMENTAL MICROBIOLOGY

Time to re-think fungal ecology? Fungal ecological niches are often prejudged

(2018) Marc-André Selosse et al.   NEW PHYTOLOGIST

Variations of Bacterial Community Diversity Within the Rhizosphere of Three Phylogenetically Related Perennial Shrub Plant Species Across Environmental Gradients

(2018) Xiaofan Na et al.   Frontiers in Microbiology

Microbial interactions within the plant holobiont

(2018) M. Amine Hassani et al.   Microbiome

Rhizosheath microbial community assembly of sympatric desert speargrasses is independent of the plant host

(2018) Ramona Marasco et al.   Microbiome

Fusarium graminearum: pathogen or endophyte of North American grasses?

(2017) Lotus A. Lofgren et al.   NEW PHYTOLOGIST

A Small Number of Low-abundance Bacteria Dominate Plant Species-specific Responses during Rhizosphere Colonization

(2017) Wayne Dawson et al.   Frontiers in Microbiology

Taxonomic and functional shifts in the beech rhizosphere microbiome across a natural soil toposequence

(2017) Y. Colin et al.   Scientific Reports

The Atacama Desert: Technical Resources and the Growing Importance of Novel Microbial Diversity

(2016) Alan T. Bull et al.   Annual Review of Microbiology

Unique Microbial Phylotypes in Namib Desert Dune and Gravel Plain Fairy Circle Soils

(2016) Andries J. van der Walt et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Regional and global elevational patterns of microbial species richness and evenness

(2016) Jianjun Wang et al.   ECOGRAPHY

Climate and edaphic controllers influence rhizosphere community assembly for a wild annual grass

(2016) Erin E. Nuccio et al.   ECOLOGY

Correlation detection strategies in microbial data sets vary widely in sensitivity and precision

(2016) Sophie Weiss et al.   ISME Journal

Bacterial diversity in the rhizosphere of two phylogenetically closely related plant species across environmental gradients

(2016) Xiaofan Na et al.   JOURNAL OF SOILS AND SEDIMENTS

Rhizobacterial Community Structures Associated with Native Plants Grown in Chilean Extreme Environments

(2016) Milko A. Jorquera et al.   MICROBIAL ECOLOGY

Dry Season Constrains Bacterial Phylogenetic Diversity in a Semi-Arid Rhizosphere System

(2016) Rodrigo Gouvêa Taketani et al.   MICROBIAL ECOLOGY

Plant root-microbe communication in shaping root microbiomes

(2016) Andrew Lareen et al.   PLANT MOLECULAR BIOLOGY

The Cacti Microbiome: Interplay between Habitat-Filtering and Host-Specificity

(2016) Citlali Fonseca-García et al.   Frontiers in Microbiology

Metagenomic analysis provides insights into functional capacity in a hyperarid desert soil niche community

(2015) Surendra Vikram et al.   ENVIRONMENTAL MICROBIOLOGY

The importance of the microbiome of the plant holobiont

(2015) Philippe Vandenkoornhuyse et al.   NEW PHYTOLOGIST

Plant compartment and biogeography affect microbiome composition in cultivated and native Agave species

(2015) Devin Coleman-Derr et al.   NEW PHYTOLOGIST

Increasing aridity reduces soil microbial diversity and abundance in global drylands

(2015) Fernando T. Maestre et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Rapid and Economical Method for Efficient DNA Extraction from Diverse Soils Suitable for Metagenomic Applications

(2015) Selvaraju Gayathri Devi et al.   PLoS One

Comparison and Validation of Some ITS Primer Pairs Useful for Fungal Metabarcoding Studies

(2014) Michiel Op De Beeck et al.   PLoS One

Global diversity and geography of soil fungi

(2014) L. Tedersoo et al.   SCIENCE

Deciphering microbial interactions and detecting keystone species with co-occurrence networks

(2014) David Berry et al.   Frontiers in Microbiology

Practical innovations for high-throughput amplicon sequencing

(2013) Derek S Lundberg et al.   NATURE METHODS

The PGPR strainPhyllobacterium brassicacearumSTM196 induces a reproductive delay and physiological changes that result in improved drought tolerance inArabidopsis

(2013) Justine Bresson et al.   NEW PHYTOLOGIST

First Report of Pepper Fruit Rot Caused by Fusarium concentricum in China

(2013) J. H. Wang et al.   PLANT DISEASE

Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data

(2013) Johan Bengtsson-Palme et al.   Methods in Ecology and Evolution

Defining the core Arabidopsis thaliana root microbiome

(2012) Derek S. Lundberg et al.   NATURE

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Microbial Co-occurrence Relationships in the Human Microbiome

(2012) Karoline Faust et al.   PLoS Computational Biology

Comparative metagenomic, phylogenetic and physiological analyses of soil microbial communities across nitrogen gradients

(2011) Noah Fierer et al.   ISME Journal

Using network analysis to explore co-occurrence patterns in soil microbial communities

(2011) Albert Barberán et al.   ISME Journal

Drivers of bacterial  -diversity depend on spatial scale

(2011) J. B. H. Martiny et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Beneficial bacteria of agricultural importance

(2010) Olubukola Oluranti Babalola   BIOTECHNOLOGY LETTERS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

The UNITE database for molecular identification of fungi - recent updates and future perspectives

(2010) Kessy Abarenkov et al.   NEW PHYTOLOGIST

Plant-Growth-Promoting Rhizobacteria

(2009) Ben Lugtenberg et al.   Annual Review of Microbiology

SEED DISPERSAL OF DESERT ANNUALS

(2008) D. Lawrence Venable et al.   ECOLOGY

Plant-driven selection of microbes

(2008) Anton Hartmann et al.   PLANT AND SOIL