Phylogenomics of a new fungal phylum reveals multiple waves of reductive evolution across Holomycota
Published 2021 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Phylogenomics of a new fungal phylum reveals multiple waves of reductive evolution across Holomycota
Authors
Keywords
-
Journal
Nature Communications
Volume 12, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2021-08-17
DOI
10.1038/s41467-021-25308-w
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Long rDNA amplicon sequencing of insect-infecting nephridiophagids reveals their affiliation to the Chytridiomycota and a potential to switch between hosts
- (2021) Jürgen F. H. Strassert et al. Scientific Reports
- A genome-scale phylogeny of the kingdom Fungi
- (2021) Yuanning Li et al. CURRENT BIOLOGY
- Fungal evolution: major ecological adaptations and evolutionary transitions
- (2019) Miguel A. Naranjo‐Ortiz et al. BIOLOGICAL REVIEWS
- The Ultrastructure of Sanchytrium tribonematis (Sanchytriaceae, Fungi incertae sedis ) Confirms its Close Relationship to Amoeboradix
- (2019) Sergey A. Karpov et al. JOURNAL OF EUKARYOTIC MICROBIOLOGY
- Early fungi from the Proterozoic era in Arctic Canada
- (2019) Corentin C. Loron et al. NATURE
- Extensive loss of cell-cycle and DNA repair genes in an ancient lineage of bipolar budding yeasts
- (2019) Jacob L. Steenwyk et al. PLOS BIOLOGY
- A distinct lineage of giant viruses brings a rhodopsin photosystem to unicellular marine predators
- (2019) David M. Needham et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Fungal evolution: diversity, taxonomy and phylogeny of the Fungi
- (2019) Miguel A. Naranjo‐Ortiz et al. BIOLOGICAL REVIEWS
- Combined cultivation and single-cell approaches to the phylogenomics of nucleariid amoebae, close relatives of fungi
- (2019) Luis Javier Galindo et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Comparative genomics reveals the origin of fungal hyphae and multicellularity
- (2019) Enikő Kiss et al. Nature Communications
- Complex multicellularity in fungi: evolutionary convergence, single origin, or both?
- (2018) László G. Nagy et al. BIOLOGICAL REVIEWS
- High-level classification of the Fungi and a tool for evolutionary ecological analyses
- (2018) Leho Tedersoo et al. FUNGAL DIVERSITY
- Clarifying the Relationships between Microsporidia and Cryptomycota
- (2018) David Bass et al. JOURNAL OF EUKARYOTIC MICROBIOLOGY
- The Chytrid-like Parasites of Algae Amoeboradix gromovi gen. et sp. nov. and Sanchytrium tribonematis Belong to a New Fungal Lineage
- (2018) Sergey A. Karpov et al. PROTIST
- Evolutionary genomics of Metchnikovella incurvata (Metchnikovellidae), an early branching microsporidium
- (2018) Luis Javier Galindo et al. Genome Biology and Evolution
- Evolutionary dynamics of mycorrhizal symbiosis in land plant diversification
- (2018) Frida A. A. Feijen et al. Scientific Reports
- Molecular evolution and transcriptional profile of GH3 and GH20 β-N-acetylglucosaminidases in the entomopathogenic fungus Metarhizium anisopliae
- (2018) Eder Silva de Oliveira et al. GENETICS AND MOLECULAR BIOLOGY
- Contemporaneous radiations of fungi and plants linked to symbiosis
- (2018) François Lutzoni et al. Nature Communications
- Leveraging single-cell genomics to expand the fungal tree of life
- (2018) Steven R. Ahrendt et al. Nature Microbiology
- Integrating chytrid fungal parasites into plankton ecology: research gaps and needs
- (2017) Thijs Frenken et al. ENVIRONMENTAL MICROBIOLOGY
- Monoblepharidomycetes diversity includes new parasitic and saprotrophic species with highly intronized rDNA
- (2017) Sergey A. Karpov et al. Fungal Biology
- Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-Mapper
- (2017) Jaime Huerta-Cepas et al. MOLECULAR BIOLOGY AND EVOLUTION
- Modeling Site Heterogeneity with Posterior Mean Site Frequency Profiles Accelerates Accurate Phylogenomic Estimation
- (2017) Huai-Chun Wang et al. SYSTEMATIC BIOLOGY
- Novel soil-inhabiting clades fill gaps in the fungal tree of life
- (2017) Leho Tedersoo et al. Microbiome
- Morphologic and molecular data help adopting the insect-pathogenic nephridiophagids (Nephridiophagidae) among the early diverging fungal lineages, close to the Chytridiomycota
- (2017) Renate Radek et al. MycoKeys
- An ultrastructural study of Paraphysoderma sedebokerense (Blastocladiomycota), an epibiotic parasite of microalgae
- (2016) Peter M. Letcher et al. Fungal Biology
- BlastKOALA and GhostKOALA: KEGG Tools for Functional Characterization of Genome and Metagenome Sequences
- (2016) Minoru Kanehisa et al. JOURNAL OF MOLECULAR BIOLOGY
- A phylum-level phylogenetic classification of zygomycete fungi based on genome-scale data
- (2016) Joseph W. Spatafora et al. MYCOLOGIA
- The BIG Data Center: from deposition to integration to translation
- (2016) NUCLEIC ACIDS RESEARCH
- BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
- (2015) Felipe A. Simão et al. BIOINFORMATICS
- Phylogenomics Reveals Convergent Evolution of Lifestyles in Close Relatives of Animals and Fungi
- (2015) Guifré Torruella et al. CURRENT BIOLOGY
- A Cyclic GMP-Dependent K + Channel in the Blastocladiomycete Fungus Blastocladiella emersonii
- (2015) Gabriela Mól Avelar et al. EUKARYOTIC CELL
- Genome Sequence, Comparative Analysis, and Evolutionary Insights into Chitinases of Entomopathogenic Fungus Hirsutella thompsonii
- (2015) Yamini Agrawal et al. Genome Biology and Evolution
- Phylogenomic Analyses Indicate that Early Fungi Evolved Digesting Cell Walls of Algal Ancestors of Land Plants
- (2015) Ying Chang et al. Genome Biology and Evolution
- Warming accelerates termination of a phytoplankton spring bloom by fungal parasites
- (2015) Thijs Frenken et al. GLOBAL CHANGE BIOLOGY
- A new flagellated dispersion stage in Paraphysoderma sedebokerense, a pathogen of Haematococcus pluvialis
- (2015) Martina Strittmatter et al. JOURNAL OF APPLIED PHYCOLOGY
- How to build a microbial eye
- (2015) Thomas A. Richards et al. NATURE
- Plant Cell Wall–Degrading Enzymes and Their Secretion in Plant-Pathogenic Fungi
- (2014) Christian P. Kubicek et al. Annual Review of Phytopathology
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- A Rhodopsin-Guanylyl Cyclase Gene Fusion Functions in Visual Perception in a Fungus
- (2014) Gabriela M. Avelar et al. CURRENT BIOLOGY
- High Variability of Mitochondrial Gene Order among Fungi
- (2014) Gabriela Aguileta et al. Genome Biology and Evolution
- IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
- (2014) Lam-Tung Nguyen et al. MOLECULAR BIOLOGY AND EVOLUTION
- First evidence of mutualism between ancient plant lineages (Haplomitriopsida liverworts) and Mucoromycotina fungi and its response to simulated Palaeozoic changes in atmospheric CO2
- (2014) Katie J. Field et al. NEW PHYTOLOGIST
- Microsporidia-like parasites of amoebae belong to the early fungal lineage Rozellomycota
- (2014) Daniele Corsaro et al. PARASITOLOGY RESEARCH
- Evolution of a morphological novelty occurred before genome compaction in a lineage of extreme parasites
- (2014) K. L. Haag et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Biofilms, flagella, and mechanosensing of surfaces by bacteria
- (2014) Robert Belas TRENDS IN MICROBIOLOGY
- On the Age of Eukaryotes: Evaluating Evidence from Fossils and Molecular Clocks
- (2014) L. Eme et al. Cold Spring Harbor Perspectives in Biology
- Morphology, phylogeny, and ecology of the aphelids (Aphelidea, Opisthokonta) and proposal for the new superphylum Opisthosporidia
- (2014) Sergey A. Karpov et al. Frontiers in Microbiology
- Mycoloop: chytrids in aquatic food webs
- (2014) Maiko Kagami et al. Frontiers in Microbiology
- The Genome of the Anaerobic Fungus Orpinomyces sp. Strain C1A Reveals the Unique Evolutionary History of a Remarkable Plant Biomass Degrader
- (2013) Noha H. Youssef et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- QUAST: quality assessment tool for genome assemblies
- (2013) Alexey Gurevich et al. BIOINFORMATICS
- Genome sequencing and comparative genomics of honey bee microsporidia, Nosema apis reveal novel insights into host-parasite interactions
- (2013) Yan ping Chen et al. BMC GENOMICS
- Microbial and Animal Rhodopsins: Structures, Functions, and Molecular Mechanisms
- (2013) Oliver P. Ernst et al. CHEMICAL REVIEWS
- Shared Signatures of Parasitism and Phylogenomics Unite Cryptomycota and Microsporidia
- (2013) Timothy Y. James et al. CURRENT BIOLOGY
- Reduction and Expansion in Microsporidian Genome Evolution: New Insights from Comparative Genomics
- (2013) Sirintra Nakjang et al. Genome Biology and Evolution
- Ultrafast Approximation for Phylogenetic Bootstrap
- (2013) B. Q. Minh et al. MOLECULAR BIOLOGY AND EVOLUTION
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
- (2013) K. Katoh et al. MOLECULAR BIOLOGY AND EVOLUTION
- Evolution of modular intraflagellar transport from a coatomer-like progenitor
- (2013) T. J. P. van Dam et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data
- (2012) M. Kearse et al. BIOINFORMATICS
- Phylogenomics supports microsporidia as the earliest diverging clade of sequenced fungi
- (2012) Salvador Capella-Gutiérrez et al. BMC BIOLOGY
- Microsporidian genome analysis reveals evolutionary strategies for obligate intracellular growth
- (2012) C. A. Cuomo et al. GENOME RESEARCH
- SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
- (2012) Anton Bankevich et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- MITOS: Improved de novo metazoan mitochondrial genome annotation
- (2012) Matthias Bernt et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- The dawn of symbiosis between plants and fungi
- (2011) M. I. Bidartondo et al. Biology Letters
- A multigene phylogeny of Olpidium and its implications for early fungal evolution
- (2011) Satoshi Sekimoto et al. BMC EVOLUTIONARY BIOLOGY
- Tracing the origins of centrioles, cilia, and flagella
- (2011) Zita Carvalho-Santos et al. JOURNAL OF CELL BIOLOGY
- A Consistent Phylogenetic Backbone for the Fungi
- (2011) I. Ebersberger et al. MOLECULAR BIOLOGY AND EVOLUTION
- Discovery of novel intermediate forms redefines the fungal tree of life
- (2011) Meredith D. M. Jones et al. NATURE
- Estimating the timing of early eukaryotic diversification with multigene molecular clocks
- (2011) L. W. Parfrey et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Survey of Branch Support Methods Demonstrates Accuracy, Power, and Robustness of Fast Likelihood-based Approximation Schemes
- (2011) Maria Anisimova et al. SYSTEMATIC BIOLOGY
- Count: evolutionary analysis of phylogenetic profiles with parsimony and likelihood
- (2010) M. Csuos BIOINFORMATICS
- trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
- (2009) S. Capella-Gutierrez et al. BIOINFORMATICS
- PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating
- (2009) Nicolas Lartillot et al. BIOINFORMATICS
- BLAST+: architecture and applications
- (2009) Christiam Camacho et al. BMC BIOINFORMATICS
- The Fungi
- (2009) Jason E. Stajich et al. CURRENT BIOLOGY
- FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix
- (2009) M. N. Price et al. MOLECULAR BIOLOGY AND EVOLUTION
- Evidence that chytrids dominate fungal communities in high-elevation soils
- (2009) K. R. Freeman et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The Environmental Clade LKM11 and Rozella Form the Deepest Branching Clade of Fungi
- (2009) Enrique Lara et al. PROTIST
- Evolution of the mitochondrial genome of Metazoa as exemplified by comparison of congeneric species
- (2008) C Gissi et al. HEREDITY
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started