Fine Spatial Scale Variation of Soil Microbial Communities under European Beech and Norway Spruce

Responses of Soil Fungal Populations and Communities to the Thinning of Cryptomeria Japonica Forests

(2016) Wan-Rou Lin et al.   MICROBES AND ENVIRONMENTS

Bacterial Community Responses to Soils along a Latitudinal and Vegetation Gradient on the Loess Plateau, China

(2016) Quanchao Zeng et al.   PLoS One

Specific impacts of beech and Norway spruce on the structure and diversity of the rhizosphere and soil microbial communities

(2016) S. Uroz et al.   Scientific Reports

Terracidiphilus gabretensis gen. nov., sp. nov., an Abundant and Active Forest Soil Acidobacterium Important in Organic Matter Transformation

(2015) Paula García-Fraile et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Tree diversity and species identity effects on soil fungi, protists and animals are context dependent

(2015) Leho Tedersoo et al.   ISME Journal

Strong effect of climate on ectomycorrhizal fungal composition: evidence from range overlap between two mountains

(2015) Yumiko Miyamoto et al.   ISME Journal

Resource Type and Availability Regulate Fungal Communities Along Arable Soil Profiles

(2015) Julia Moll et al.   MICROBIAL ECOLOGY

Mapping tree density at a global scale

(2015) T. W. Crowther et al.   NATURE

The bacterial community inhabiting temperate deciduous forests is vertically stratified and undergoes seasonal dynamics

(2015) Rubén López-Mondéjar et al.   SOIL BIOLOGY & BIOCHEMISTRY

Composition of fungal and bacterial communities in forest litter and soil is largely determined by dominant trees

(2015) Michaela Urbanová et al.   SOIL BIOLOGY & BIOCHEMISTRY

Rhizobiales as functional and endosymbiontic members in the lichen symbiosis of Lobaria pulmonaria L.

(2015) Armin Erlacher et al.   Frontiers in Microbiology

Nutrient-cycling microbes in coastal Douglas-fir forests: regional-scale correlation between communities, in situ climate, and other factors

(2015) Philip-Edouard Shay et al.   Frontiers in Microbiology

Forest Management Type Influences Diversity and Community Composition of Soil Fungi across Temperate Forest Ecosystems

(2015) Kezia Goldmann et al.   Frontiers in Microbiology

Analyses of soil microbial community compositions and functional genes reveal potential consequences of natural forest succession

(2015) Jing Cong et al.   Scientific Reports

Wastewater Irrigation Increases the Abundance of Potentially Harmful Gammaproteobacteria in Soils in Mezquital Valley, Mexico

(2014) Melanie Broszat et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Changes within a single land-use category alter microbial diversity and community structure: Molecular evidence from wood-inhabiting fungi in forest ecosystems

(2014) Witoon Purahong et al.   JOURNAL OF ENVIRONMENTAL MANAGEMENT

GenBank

(2014) Dennis A. Benson et al.   NUCLEIC ACIDS RESEARCH

Temporal and seasonal change in microbial community structure of an undisturbed, disturbed, and carbon-amended pasture soil

(2014) Bryan A. Stevenson et al.   SOIL BIOLOGY & BIOCHEMISTRY

Leaf litter is the main driver for changes in bacterial community structures in the rhizosphere of ash and beech

(2013) Birgit Pfeiffer et al.   APPLIED SOIL ECOLOGY

High plant species richness indicates management-related disturbances rather than the conservation status of forests

(2013) Steffen Boch et al.   BASIC AND APPLIED ECOLOGY

Characterization of depth-related changes in bacterial community compositions and functions of a paddy soil profile

(2013) Jing Huang et al.   FEMS MICROBIOLOGY LETTERS

Towards a unified paradigm for sequence-based identification of fungi

(2013) Urmas Kõljalg et al.   MOLECULAR ECOLOGY

Seasonal dynamics of fungal communities in a temperate oak forest soil

(2013) Jana Voříšková et al.   NEW PHYTOLOGIST

Ectomycorrhizal-Dominated Boreal and Tropical Forests Have Distinct Fungal Communities, but Analogous Spatial Patterns across Soil Horizons

(2013) Krista L. McGuire et al.   PLoS One

Fungi at a Small Scale: Spatial Zonation of Fungal Assemblages around Single Trees

(2013) Sara Branco et al.   PLoS One

Detection of the horizontal spatial structure of soil fungal communities in a natural forest

(2013) Kohmei Kadowaki et al.   POPULATION ECOLOGY

Seasonal differences in tree species' influence on soil microbial communities

(2013) Carolin Thoms et al.   SOIL BIOLOGY & BIOCHEMISTRY

Roots from beech (Fagus sylvatica L.) and ash (Fraxinus excelsior L.) differentially affect soil microorganisms and carbon dynamics

(2013) Simone Cesarz et al.   SOIL BIOLOGY & BIOCHEMISTRY

EMPeror: a tool for visualizing high-throughput microbial community data

(2013) Yoshiki Vázquez-Baeza et al.   GigaScience

Community genomic analyses constrain the distribution of metabolic traits across the Chloroflexi phylum and indicate roles in sediment carbon cycling

(2013) Laura A Hug et al.   Microbiome

Cellulose utilization in forest litter and soil: identification of bacterial and fungal decomposers

(2012) Martina Štursová et al.   FEMS MICROBIOLOGY ECOLOGY

Estimation of clay content from easily measurable water content of air-dried soil

(2012) Jana Wäldchen et al.   JOURNAL OF PLANT NUTRITION AND SOIL SCIENCE

Genetic host-tree effects on the ectomycorrhizal community and root characteristics of Norway spruce

(2012) S. M. Velmala et al.   MYCORRHIZA

Fast, accurate error-correction of amplicon pyrosequences using Acacia

(2012) Lauren Bragg et al.   NATURE METHODS

Greater accumulation of litter in spruce (Picea abies) compared to beech (Fagus sylvatica) stands is not a consequence of the inherent recalcitrance of needles

(2012) Torsten W. Berger et al.   PLANT AND SOIL

Differences in Soil Fungal Communities between European Beech (Fagus sylvatica L.) Dominated Forests Are Related to Soil and Understory Vegetation

(2012) Tesfaye Wubet et al.   PLoS One

Digging deeper to find unique microbial communities: The strong effect of depth on the structure of bacterial and archaeal communities in soil

(2012) Kathryn G. Eilers et al.   SOIL BIOLOGY & BIOCHEMISTRY

Root-induced tree species effects on the source/sink strength for greenhouse gases (CH4, N2O and CO2) of a temperate deciduous forest soil

(2012) Ann-Catrin Fender et al.   SOIL BIOLOGY & BIOCHEMISTRY

Climate change may cause severe loss in the economic value of European forest land

(2012) Marc Hanewinkel et al.   Nature Climate Change

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Active and total microbial communities in forest soil are largely different and highly stratified during decomposition

(2011) Petr Baldrian et al.   ISME Journal

Effects of single and mixed species forest ecosystems on diversity and function of soil microbial community in subtropical China

(2011) Yumei Jiang et al.   JOURNAL OF SOILS AND SEDIMENTS

Where is the unseen fungal diversity hidden? A study of Mortierella reveals a large contribution of reference collections to the identification of fungal environmental sequences

(2011) László G. Nagy et al.   NEW PHYTOLOGIST

Pyrosequencing-Based Assessment of Bacterial Community Structure Along Different Management Types in German Forest and Grassland Soils

(2011) Heiko Nacke et al.   PLoS One

Differential Growth Responses of Soil Bacterial Taxa to Carbon Substrates of Varying Chemical Recalcitrance

(2011) Katherine C. Goldfarb et al.   Frontiers in Microbiology

Effects of spatial variations in soil evaporation caused by tree shading on water flux partitioning in a semi-arid pine forest

(2010) N. Raz-Yaseef et al.   AGRICULTURAL AND FOREST METEOROLOGY

Horizon-Specific Bacterial Community Composition of German Grassland Soils, as Revealed by Pyrosequencing-Based Analysis of 16S rRNA Genes

(2010) C. Will et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Implementing large-scale and long-term functional biodiversity research: The Biodiversity Exploratories

(2010) Markus Fischer et al.   BASIC AND APPLIED ECOLOGY

Litter decomposition: what controls it and how can we alter it to sequester more carbon in forest soils?

(2010) Cindy E. Prescott   BIOGEOCHEMISTRY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Functional diversity in resource use by fungi

(2010) Krista L. McGuire et al.   ECOLOGY

UniFrac: an effective distance metric for microbial community comparison

(2010) Catherine Lozupone et al.   ISME Journal

Soil Microbial Communities Associated with Douglas-fir and Red Alder Stands at High- and Low-Productivity Forest Sites in Oregon, USA

(2010) Stephanie A. Yarwood et al.   MICROBIAL ECOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Metabolic responses of Norway spruce (Picea abies) trees to long-term forest management practices and acute (NH4)2SO4 fertilization: transport of soluble non-protein nitrogen compounds in xylem and phloem

(2010) PAUL WEBER et al.   NEW PHYTOLOGIST

Belowground carbon allocation by trees drives seasonal patterns of extracellular enzyme activities by altering microbial community composition in a beech forest soil

(2010) Christina Kaiser et al.   NEW PHYTOLOGIST

Soil microbial community structure in European forests in relation to forest type and atmospheric nitrogen deposition

(2010) Sophie Zechmeister-Boltenstern et al.   PLANT AND SOIL

Direct and indirect effects of tree diversity drive soil microbial diversity in temperate deciduous forest

(2010) Carolin Thoms et al.   SOIL BIOLOGY & BIOCHEMISTRY

One gram of soil: a microbial biochemical gene library

(2009) J. T. Trevors   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Pyrosequencing-Based Assessment of Soil pH as a Predictor of Soil Bacterial Community Structure at the Continental Scale

(2009) C. L. Lauber et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Three Genomes from the Phylum Acidobacteria Provide Insight into the Lifestyles of These Microorganisms in Soils

(2009) N. L. Ward et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Associations between species and groups of sites: indices and statistical inference

(2009) Miquel De Cáceres et al.   ECOLOGY

Tree Species Traits Influence Soil Physical, Chemical, and Biological Properties in High Elevation Forests

(2009) Edward Ayres et al.   PLoS One

Conservative Fragments in Bacterial 16S rRNA Genes and Primer Design for 16S Ribosomal DNA Amplicons in Metagenomic Studies

(2009) Yong Wang et al.   PLoS One

Extensive Phylogenetic Analysis of a Soil Bacterial Community Illustrates Extreme Taxon Evenness and the Effects of Amplicon Length, Degree of Coverage, and DNA Fractionation on Classification and Ecological Parameters

(2008) S. E. Morales et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Changes in Bacterial and Archaeal Community Structure and Functional Diversity along a Geochemically Variable Soil Profile

(2008) C. M. Hansel et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

PLANT–SOIL–MICROORGANISM INTERACTIONS: HERITABLE RELATIONSHIP BETWEEN PLANT GENOTYPE AND ASSOCIATED SOIL MICROORGANISMS

(2008) Jennifer A. Schweitzer et al.   ECOLOGY

The unseen majority: soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems

(2008) Marcel G. A. van der Heijden et al.   ECOLOGY LETTERS

Vertical distribution of the ectomycorrhizal community in the top soil of Norway spruce stands

(2008) Linda Scattolin et al.   EUROPEAN JOURNAL OF FOREST RESEARCH

NCBI BLAST: a better web interface

(2008) M. Johnson et al.   NUCLEIC ACIDS RESEARCH

The influence of soil properties on the structure of bacterial and fungal communities across land-use types

(2008) Christian L. Lauber et al.   SOIL BIOLOGY & BIOCHEMISTRY