Seasonal trends in the biomass and structure of bryophyte-associated fungal communities explored by 454 pyrosequencing

Barcoded Primers Used in Multiplex Amplicon Pyrosequencing Bias Amplification

(2011) David Berry et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Role of selected dark septate endophyte species and other hyphomycetes as saprobes on moss gametophytes

(2011) Melissa J. Day et al.   Botany

In vitro degradation of the moss Hylocomium splendens by three pleosporalean fungi

(2011) Melissa J. Day et al.   CANADIAN JOURNAL OF MICROBIOLOGY

Massively parallel rRNA gene sequencing exacerbates the potential for biased community diversity comparisons due to variable library sizes

(2011) Thomas M. Gihring et al.   ENVIRONMENTAL MICROBIOLOGY

Multiple markers pyrosequencing reveals highly diverse and host-specific fungal communities on the mangrove trees Avicennia marina and Rhizophora stylosa

(2011) Yonathan Arfi et al.   FEMS MICROBIOLOGY ECOLOGY

Assessment of soil fungal diversity in different alpine tundra habitats by means of pyrosequencing

(2011) Guillaume Lentendu et al.   FUNGAL DIVERSITY

Climate change feedbacks to microbial decomposition in boreal soils

(2011) Steven D. Allison et al.   Fungal Ecology

Leaf-litter decomposition across three flooding regimes in a seasonally flooded Amazonian watershed

(2011) Krista A. Capps et al.   JOURNAL OF TROPICAL ECOLOGY

Changes in the root-associated fungal communities along a primary succession gradient analysed by 454 pyrosequencing

(2011) RAKEL BLAALID et al.   MOLECULAR ECOLOGY

ITS-1 versus ITS-2 pyrosequencing: a comparison of fungal populations in truffle grounds

(2011) Antonietta Mello et al.   MYCOLOGIA

High consistency between replicate 454 pyrosequencing analyses of ectomycorrhizal plant root samples

(2011) Håvard Kauserud et al.   MYCORRHIZA

Analysis of ribosomal RNA indicates seasonal fungal community dynamics in Andropogon gerardii roots

(2011) Ari Jumpponen   MYCORRHIZA

Distinct seasonal assemblages of arbuscular mycorrhizal fungi revealed by massively parallel pyrosequencing

(2011) Alex J. Dumbrell et al.   NEW PHYTOLOGIST

Population Genetics of the Aquatic Fungus Tetracladium marchalianum over Space and Time

(2011) Jennifer L. Anderson et al.   PLoS One

Effects of soil frost on growth, composition and respiration of the soil microbial decomposer community

(2011) Mahsa Haei et al.   SOIL BIOLOGY & BIOCHEMISTRY

Soil fungal community structure along a soil health gradient in pea fields examined using deep amplicon sequencing

(2011) Lihui Xu et al.   SOIL BIOLOGY & BIOCHEMISTRY

Current state and perspectives of fungal DNA barcoding and rapid identification procedures

(2010) Dominik Begerow et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Mushroom's spore size and time of fruiting are strongly related: is moisture important?

(2010) H. Kauserud et al.   Biology Letters

ITS as an environmental DNA barcode for fungi: an in silico approach reveals potential PCR biases

(2010) Eva Bellemain et al.   BMC MICROBIOLOGY

Saprobic and parasitic interactions of Coniochaeta velutina with mosses

(2010) Marie L. Davey et al.   Botany

Quantitative Assessment of the Human Gut Microbiome Using Multitag Pyrosequencing

(2010) Patrick Gillevet et al.   CHEMISTRY & BIODIVERSITY

The Bryosphere: An Integral and Influential Component of the Earth’s Biosphere

(2010) Zoë Lindo et al.   ECOSYSTEMS

Endophytic fungi in European aspen (Populus tremula) leaves—diversity, detection, and a suggested correlation with herbivory resistance

(2010) Benedicte R. Albrectsen et al.   FUNGAL DIVERSITY

Identifying wood-inhabiting fungi with 454 sequencing – what is the probability that BLAST gives the correct species?

(2010) Otso Ovaskainen et al.   Fungal Ecology

Diversity and phenology of the macrofungal assemblages supported by litter in a tall, wet Eucalyptus obliqua forest in southern Tasmania, Australia

(2010) Genevieve M. Gates et al.   Fungal Ecology

Applications of next generation sequencing in molecular ecology of non-model organisms

(2010) R Ekblom et al.   HEREDITY

Seasonal variations in the prevalence ofCryptococcus neoformansvar.grubiiandCryptococcus gattiiin decayed wood inside trunk hollows of diverse tree species in north-western India: a retrospective study

(2010) H. S. Randhawa et al.   MEDICAL MYCOLOGY

Massively parallel 454-sequencing of fungal communities inQuercusspp. ectomycorrhizas indicates seasonal dynamics in urban and rural sites

(2010) ARI JUMPPONEN et al.   MOLECULAR ECOLOGY

Quantifying microbial communities with 454 pyrosequencing: does read abundance count?

(2010) ANTHONY S. AMEND et al.   MOLECULAR ECOLOGY

Ectomycorrhizas and water relations of trees: a review

(2010) Tarja Lehto et al.   MYCORRHIZA

Rapidly denoising pyrosequencing amplicon reads by exploiting rank-abundance distributions

(2010) Jens Reeder et al.   NATURE METHODS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

454 Pyrosequencing and Sanger sequencing of tropical mycorrhizal fungi provide similar results but reveal substantial methodological biases

(2010) Leho Tedersoo et al.   NEW PHYTOLOGIST

Seasonally dynamic fungal communities in the Quercus macrocarpa phyllosphere differ between urban and nonurban environments

(2010) A. Jumpponen et al.   NEW PHYTOLOGIST

Response of feather moss associated N2 fixation and litter decomposition to variations in simulated rainfall intensity and frequency

(2010) Benjamin G. Jackson et al.   OIKOS

Phylogenetic Distribution of Fungal Sterols

(2010) John D. Weete et al.   PLoS One

The Effects of Alignment Quality, Distance Calculation Method, Sequence Filtering, and Region on the Analysis of 16S rRNA Gene-Based Studies

(2010) Patrick D. Schloss   PLoS Computational Biology

Pathogenesis of bryophyte hosts by the ascomycete Atradidymella muscivora

(2009) M. L. Davey et al.   AMERICAN JOURNAL OF BOTANY

Multiple origins of symbioses between ascomycetes and bryophytes suggested by a five-gene phylogeny

(2009) Soili Stenroos et al.   CLADISTICS

Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates

(2009) Victor Kunin et al.   ENVIRONMENTAL MICROBIOLOGY

Microbial diversity in alpine tundra soils correlates with snow cover dynamics

(2009) Lucie Zinger et al.   ISME Journal

Snow Molds: A Group of Fungi that Prevail under Snow

(2009) Naoyuki Matsumoto   MICROBES AND ENVIRONMENTS

Accurate determination of microbial diversity from 454 pyrosequencing data

(2009) Christopher Quince et al.   NATURE METHODS

454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity

(2009) M. Buée et al.   NEW PHYTOLOGIST

Massively parallel 454 sequencing indicates hyperdiverse fungal communities in temperateQuercus macrocarpaphyllosphere

(2009) A. Jumpponen et al.   NEW PHYTOLOGIST

Climate change and spring-fruiting fungi

(2009) H. Kauserud et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Microbial communities and their relevance for ecosystem models: Decomposition as a case study

(2009) Krista L. McGuire et al.   SOIL BIOLOGY & BIOCHEMISTRY

Fungal biomass associated with the phyllosphere of bryophytes and vascular plants

(2009) M.L. Davey et al.  

Temporal Changes in the Ectomycorrhizal Community in Two Soil Horizons of a Temperate Oak Forest

(2008) P.-E. Courty et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Relationships between Vaccinium Vitis-Idaea and the Frequency of Its Fungal Pathogen Exobasidium Splendidum, and the Environment

(2008) Tuija Pehkonen et al.   ARCTIC ANTARCTIC AND ALPINE RESEARCH

High diversity of fungi associated with living parts of boreal forest bryophytes

(2008) Håvard Kauserud et al.   Botany

The unseen majority: soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems

(2008) Marcel G. A. van der Heijden et al.   ECOLOGY LETTERS

Summer drought decreases soil fungal diversity and associated phenol oxidase activity in upland Calluna heathland soil

(2008) Hannah Toberman et al.   FEMS MICROBIOLOGY ECOLOGY

Organic matter availability structures microbial biomass and activity in a Mediterranean stream

(2008) JOAN ARTIGAS et al.   FRESHWATER BIOLOGY

Phylogeny and Ecophysiology of Opportunistic “Snow Molds” from a Subalpine Forest Ecosystem

(2008) S. K. Schmidt et al.   MICROBIAL ECOLOGY

Endophytic and epiphytic phyllosphere fungi of Camellia japonica: seasonal and leaf age-dependent variations

(2008) Takashi Osono   MYCOLOGIA

Seasonal and temporal dynamics of arbuscular mycorrhizal and dark septate endophytic fungi in a tallgrass prairie ecosystem are minimally affected by nitrogen enrichment

(2008) Keerthi Mandyam et al.   MYCORRHIZA

Seasonal dynamics of ectomycorrhizal fungus assemblages on oak seedlings in the southeastern Appalachian Mountains

(2008) John F. Walker et al.   MYCORRHIZA

Scale and density dependent relationships among roots, mycorrhizal fungi and collembola in grassland and forest

(2008) Diego F. Steinaker et al.   OIKOS

Temporal variation in soil microbial communities in Alpine tundra

(2007) Robert G. Björk et al.   SOIL BIOLOGY & BIOCHEMISTRY