A metagenomics-based approach to the top-down effect on the detritivore food web: a salamanders influence on fungal communities within a deciduous forest

Top-down control of soil fungal community composition by a globally distributed keystone consumer

(2013) Thomas W. Crowther et al.   ECOLOGY

Sharing of Diverse Mycorrhizal and Root-Endophytic Fungi among Plant Species in an Oak-Dominated Cool–Temperate Forest

(2013) Hirokazu Toju et al.   PLoS One

CloVR-ITS: Automated internal transcribed spacer amplicon sequence analysis pipeline for the characterization of fungal microbiota

(2013) James Robert White et al.   Microbiome

PyroTrimmer: a software with GUI for pre-processing 454 amplicon sequences

(2012) Jeongsu Oh et al.   JOURNAL OF MICROBIOLOGY

High-Coverage ITS Primers for the DNA-Based Identification of Ascomycetes and Basidiomycetes in Environmental Samples

(2012) Hirokazu Toju et al.   PLoS One

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Outcomes of fungal interactions are determined by soil invertebrate grazers

(2011) Thomas W. Crowther et al.   ECOLOGY LETTERS

Species-specific effects of grazing invertebrates on mycelial emergence and growth from woody resources into soil

(2011) Thomas W. Crowther et al.   Fungal Ecology

Species-specific effects of soil fauna on fungal foraging and decomposition

(2011) Thomas W. Crowther et al.   OECOLOGIA

Invertebrate grazing determines enzyme production by basidiomycete fungi

(2011) Thomas W. Crowther et al.   SOIL BIOLOGY & BIOCHEMISTRY

Does Plethodon cinereus Affect Leaf Litter Decomposition and Invertebrate Abundances in Mixed Oak Forest?

(2010) Jessica A. Homyack et al.   JOURNAL OF HERPETOLOGY

454 Pyrosequencing and Sanger sequencing of tropical mycorrhizal fungi provide similar results but reveal substantial methodological biases

(2010) Leho Tedersoo et al.   NEW PHYTOLOGIST

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Systematic artifacts in metagenomes from complex microbial communities

(2009) Vicente Gomez-Alvarez et al.   ISME Journal

Statistical Methods for Detecting Differentially Abundant Features in Clinical Metagenomic Samples

(2009) James Robert White et al.   PLoS Computational Biology

Wood-inhabiting ligninolytic basidiomycetes in soils: Ecology and constraints for applicability in bioremediation

(2008) Petr Baldrian   Fungal Ecology