A phylum-level phylogenetic classification of zygomycete fungi based on genome-scale data

Hyphal tip cytoplasmic organization in four zygomycetous fungi

(2016) Karen E. Fisher et al.   MYCOLOGIA

Evidence for the sexual origin of heterokaryosis in arbuscular mycorrhizal fungi

(2016) Jeanne Ropars et al.   Nature Microbiology

Evolution of zygomycetous spindle pole bodies: Evidence from Coemansia reversa mitosis

(2015) David J. McLaughlin et al.   AMERICAN JOURNAL OF BOTANY

Phylogenomic Analyses Indicate that Early Fungi Evolved Digesting Cell Walls of Algal Ancestors of Land Plants

(2015) Ying Chang et al.   Genome Biology and Evolution

Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists

(2015) Annegret Kohler et al.   NATURE GENETICS

Evolving insights to understanding mycorrhizas

(2015) Ian A. Dickie et al.   NEW PHYTOLOGIST

Mosaic genome of endobacteria in arbuscular mycorrhizal fungi: Transkingdom gene transfer in an ancient mycoplasma-fungus association

(2015) Gloria Torres-Cortés et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Symbiotic options for the conquest of land

(2015) Katie J. Field et al.   TRENDS IN ECOLOGY & EVOLUTION

Entorrhizomycota: A New Fungal Phylum Reveals New Perspectives on the Evolution of Fungi

(2015) Robert Bauer et al.   PLoS One

ASTRAL: genome-scale coalescent-based species tree estimation

(2014) S. Mirarab et al.   BIOINFORMATICS

Endophytic fungi of Norway spruce roots in boreal pristine mire, drained peatland and mineral soil and their inhibitory effect on Heterobasidion parviporum in vitro

(2014) Eeva Terhonen et al.   Fungal Ecology

Novel Information Theory-Based Measures for Quantifying Incongruence among Phylogenetic Trees

(2014) Leonidas Salichos et al.   MOLECULAR BIOLOGY AND EVOLUTION

An eight-gene molecular phylogeny of the Kickxellomycotina, including the first phylogenetic placement of Asellariales

(2014) Eric D. Tretter et al.   MYCOLOGIA

Endogone, one of the oldest plant-associated fungi, host unique Mollicutes-related endobacteria

(2014) Alessandro Desirò et al.   NEW PHYTOLOGIST

Fungal associations inHorneophyton lignerifrom the Rhynie Chert (c. 407 million year old) closely resemble those in extant lower land plants: novel insights into ancestral plant-fungus symbioses

(2014) Christine Strullu-Derrien et al.   NEW PHYTOLOGIST

First evidence of mutualism between ancient plant lineages (Haplomitriopsida liverworts) and Mucoromycotina fungi and its response to simulated Palaeozoic changes in atmospheric CO2

(2014) Katie J. Field et al.   NEW PHYTOLOGIST

Latent homology and convergent regulatory evolution underlies the repeated emergence of yeasts

(2014) László G. Nagy et al.   Nature Communications

The Genome of the Anaerobic Fungus Orpinomyces sp. Strain C1A Reveals the Unique Evolutionary History of a Remarkable Plant Biomass Degrader

(2013) Noha H. Youssef et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Shared Signatures of Parasitism and Phylogenomics Unite Cryptomycota and Microsporidia

(2013) Timothy Y. James et al.   CURRENT BIOLOGY

Phylogenetic analysis of the genus Modicella reveals an independent evolutionary origin of sporocarp-forming fungi in the Mortierellales

(2013) Matthew E. Smith et al.   FUNGAL GENETICS AND BIOLOGY

Cellular organization in germ tube tips of Gigaspora and its phylogenetic implications

(2013) Stephen P. Bentivenga et al.   MYCOLOGIA

Insights into the phylogeny and coding potential of microbial dark matter

(2013) Christian Rinke et al.   NATURE

Extreme diversification of the mating type-high-mobility group (MATA-HMG) gene family in a plant-associated arbuscular mycorrhizal fungus

(2013) Rohan Riley et al.   NEW PHYTOLOGIST

The family structure of the Mucorales: a synoptic revision based on comprehensive multigene-genealogies

(2013) K. Hoffmann et al.   PERSOONIA

A comprehensive molecular phylogeny of the Mortierellales (Mortierellomycotina) based on nuclear ribosomal DNA

(2013) L. Wagner et al.   PERSOONIA

A Multifactor Analysis of Fungal and Bacterial Community Structure in the Root Microbiome of Mature Populus deltoides Trees

(2013) Migun Shakya et al.   PLoS One

Genome of an arbuscular mycorrhizal fungus provides insight into the oldest plant symbiosis

(2013) E. Tisserant et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Capsaspora genome reveals a complex unicellular prehistory of animals

(2013) Hiroshi Suga et al.   Nature Communications

Lineages of ectomycorrhizal fungi revisited: Foraging strategies and novel lineages revealed by sequences from belowground

(2013) Leho Tedersoo et al.   Fungal Biology Reviews

Group I Intron–Mediated Trans-splicing in Mitochondria of Gigaspora rosea and a Robust Phylogenetic Affiliation of Arbuscular Mycorrhizal Fungi with Mortierellales

(2012) Maryam Nadimi et al.   MOLECULAR BIOLOGY AND EVOLUTION

Molecular phylogeny of the Entomophthoromycota

(2012) Andrii P. Gryganskyi et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Entomophthoromycota: a new phylum and reclassification for entomophthoroid fungi

(2012) Richard A. Humber   MYCOTAXON

The mitochondrial genome of the arbuscular mycorrhizal fungusGigaspora margaritareveals two unsuspectedtrans-splicing events of group I introns

(2012) Adrian Pelin et al.   NEW PHYTOLOGIST

The Paleozoic Origin of Enzymatic Lignin Decomposition Reconstructed from 31 Fungal Genomes

(2012) D. Floudas et al.   SCIENCE

The dawn of symbiosis between plants and fungi

(2011) M. I. Bidartondo et al.   Biology Letters

A multigene phylogeny of Olpidium and its implications for early fungal evolution

(2011) Satoshi Sekimoto et al.   BMC EVOLUTIONARY BIOLOGY

The hyphal tip structure of Basidiobolus sp.: A zygomycete fungus of uncertain phylogeny

(2011) Robert W. Roberson et al.   Fungal Biology

A Consistent Phylogenetic Backbone for the Fungi

(2011) I. Ebersberger et al.   MOLECULAR BIOLOGY AND EVOLUTION

Mortierellomycotina subphyl. nov., based on multi-gene genealogies

(2011) K. Hoffmann et al.   MYCOTAXON

Where is the unseen fungal diversity hidden? A study of Mortierella reveals a large contribution of reference collections to the identification of fungal environmental sequences

(2011) László G. Nagy et al.   NEW PHYTOLOGIST

Genome Characterization of the Oleaginous Fungus Mortierella alpina

(2011) Lei Wang et al.   PLoS One

Obligate biotrophy features unraveled by the genomic analysis of rust fungi

(2011) S. Duplessis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Missing Data in Phylogenetic Analysis: Reconciling Results from Simulations and Empirical Data

(2011) John J. Wiens et al.   SYSTEMATIC BIOLOGY

Accelerated Profile HMM Searches

(2011) Sean R. Eddy   PLoS Computational Biology

Genomic Transition to Pathogenicity in Chytrid Fungi

(2011) Suzanne Joneson et al.   PLoS Pathogens

Genomic and Proteomic Analyses of the Fungus Arthrobotrys oligospora Provide Insights into Nematode-Trap Formation

(2011) Jinkui Yang et al.   PLoS Pathogens

Detection of Betaproteobacteria inside the Mycelium of the Fungus Mortierella elongata

(2010) Yoshinori Sato et al.   MICROBES AND ENVIRONMENTS

The Evolution of Sex: a Perspective from the Fungal Kingdom

(2010) S. C. Lee et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus)

(2010) J. E. Stajich et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Dating the molecular clock in fungi – how close are we?

(2010) Mary L. Berbee et al.   Fungal Biology Reviews

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

Phylogenomic analyses predict sistergroup relationship of nucleariids and Fungi and paraphyly of zygomycetes with significant support

(2009) Yu Liu et al.   BMC EVOLUTIONARY BIOLOGY

The Fungi

(2009) Jason E. Stajich et al.   CURRENT BIOLOGY

Genomic Analysis of the Basal Lineage Fungus Rhizopus oryzae Reveals a Whole-Genome Duplication

(2009) Li-Jun Ma et al.   PLoS Genetics

Fungal sex genes—searching for the ancestors

(2008) Lorna A. Casselton   BIOESSAYS

PhyloNet: a software package for analyzing and reconstructing reticulate evolutionary relationships

(2008) Cuong Than et al.   BMC BIOINFORMATICS

Identification of the sex genes in an early diverged fungus

(2008) Alexander Idnurm et al.   NATURE

The genome of the choanoflagellate Monosiga brevicollis and the origin of metazoans

(2008) Nicole King et al.   NATURE

Morphological characteristics of sporangiospores of the tempe fungus Rhizopus oligosporus differentiate it from other taxa of the R. microsporus group

(2007) Jennifer Jennessen et al.