Shifts in community composition and co-occurrence patterns of phyllosphere fungi inhabiting Mussaenda shikokiana along an elevation gradient

Endophytic and Epiphytic Phyllosphere Fungal Communities Are Shaped by Different Environmental Factors in a Mediterranean Ecosystem

(2018) Teresa Gomes et al.   MICROBIAL ECOLOGY

Fungal guilds are evenly distributed along a vertical spruce forest soil profile while individual fungi show pronounced niche partitioning

(2018) Derek Peršoh et al.   MYCOLOGICAL PROGRESS

Differential responses of soil microbial biomass, diversity, and compositions to altitudinal gradients depend on plant and soil characteristics

(2018) Chengjie Ren et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Co-occurrence patterns of soybean rhizosphere microbiome at a continental scale

(2018) Baogang Zhang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Spatial Heterogeneity and Co-occurrence of Mucosal and Luminal Microbiome across Swine Intestinal Tract

(2018) Li Zhang et al.   Frontiers in Microbiology

Identification of the fungal endophyte of Ammophila breviligulata (American beachgrass) as Epichloë amarillans

(2018) Ian Drake et al.   PeerJ

Pumpkin powdery mildew disease severity influences the fungal diversity of the phyllosphere

(2018) Zhuo Zhang et al.   PeerJ

Distance decay relationships in foliar fungal endophytes are driven by rare taxa

(2017) Ryoko Oono et al.   ENVIRONMENTAL MICROBIOLOGY

Transient leaf endophytes are the most active fungi in 1-year-old beech leaf litter

(2017) Marco Alexandre Guerreiro et al.   FUNGAL DIVERSITY

The plant circadian clock influences rhizosphere community structure and function

(2017) Charley J Hubbard et al.   ISME Journal

Differential sharing and distinct co-occurrence networks among spatially close bacterial microbiota of bark, mosses and lichens‬‬

(2017) Ines Aline Aschenbrenner et al.   MOLECULAR ECOLOGY

Changes in richness and community composition of ectomycorrhizal fungi among altitudinal vegetation types on Mount Kinabalu in Borneo

(2017) József Geml et al.   NEW PHYTOLOGIST

How to know the fungi: combining field inventories and DNA-barcoding to document fungal diversity

(2017) Camille Truong et al.   NEW PHYTOLOGIST

Multiple stressors in sediments impact adjacent hard substrate habitats and across biological domains

(2017) Jasmin C. Lawes et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Diversity and co-occurrence network of soil fungi are more responsive than those of bacteria to shifts in precipitation seasonality in a subtropical forest

(2017) Dan He et al.   SOIL BIOLOGY & BIOCHEMISTRY

Microbial Taxa Distribution Is Associated with Ecological Trophic Cascades along an Elevation Gradient

(2017) Fei Yao et al.   Frontiers in Microbiology

Fungi associated with mesophotic macroalgae from the ‘Au‘au Channel, west Maui are differentiated by host and overlap terrestrial communities

(2017) Benjamin J. Wainwright et al.   PeerJ

Uncovering unseen fungal diversity from plant DNA banks

(2017) Erin M. Datlof et al.   PeerJ

What do we learn from cultures in the omics age? High-throughput sequencing and cultivation of leaf-inhabiting endophytes from beech (Fagus sylvatica L.) revealed complementary community composition but similar correlations with local habitat conditions

(2017) Abu Bakar Siddique et al.   MycoKeys

Unique Bacteria Community Composition and Co-occurrence in the Milk of Different Ruminants

(2017) Zhipeng Li et al.   Scientific Reports

Vertical stratification of the foliar fungal community in the world’s tallest trees

(2016) Joshua G. Harrison et al.   AMERICAN JOURNAL OF BOTANY

The Phyllosphere: Microbial Jungle at the Plant–Climate Interface

(2016) Corinne Vacher et al.   Annual Review of Ecology Evolution and Systematics

Carbon constrains fungal endophyte assemblages along the timberline

(2016) Teng Yang et al.   ENVIRONMENTAL MICROBIOLOGY

A cost-effective and efficient strategy for Illumina sequencing of fungal communities: A case study of beech endophytes identified elevation as main explanatory factor for diversity and community composition

(2016) A.B. Siddique et al.   Fungal Ecology

Do foliar fungal communities of Norway spruce shift along a tree species diversity gradient in mature European forests?

(2016) Diem Nguyen et al.   Fungal Ecology

FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild

(2016) Nhu H. Nguyen et al.   Fungal Ecology

Geographic patterns of co-occurrence network topological features for soil microbiota at continental scale in eastern China

(2016) Bin Ma et al.   ISME Journal

Abundance and Diversity of Bacterial, Archaeal, and Fungal Communities Along an Altitudinal Gradient in Alpine Forest Soils: What Are the Driving Factors?

(2016) José A. Siles et al.   MICROBIAL ECOLOGY

Ericaceous plant-fungus network in a harsh alpine-subalpine environment

(2016) H. Toju et al.   MOLECULAR ECOLOGY

New and interesting chaetothyrialean fungi from Spain

(2016) H. Madrid et al.   MYCOLOGICAL PROGRESS

Habitat conditions and phenological tree traits overrule the influence of tree genotype in the needle mycobiome-Picea glaucasystem at an arctic treeline ecotone

(2016) Pascal Eusemann et al.   NEW PHYTOLOGIST

Fungal Planet description sheets: 400–468

(2016) P.W. Crous et al.   PERSOONIA

Spore Density Determines Infection Strategy by the Plant Pathogenic FungusPlectosphaerella cucumerina

(2016) Pierre Pétriacq et al.   PLANT PHYSIOLOGY

Vertical Structure of Phyllosphere Fungal Communities in a Tropical Forest in Thailand Uncovered by High-Throughput Sequencing

(2016) Ayako Izuno et al.   PLoS One

Bacterial communities in oil contaminated soils: Biogeography and co-occurrence patterns

(2016) Shuo Jiao et al.   SOIL BIOLOGY & BIOCHEMISTRY

Indicator species and co-occurrence in communities of arbuscular mycorrhizal fungi at the European scale

(2016) Marie-Lara Bouffaud et al.   SOIL BIOLOGY & BIOCHEMISTRY

Belowground responses to elevation in a changing cloud forest

(2016) Caitlin I. Looby et al.   Ecology and Evolution

Fungal Assemblages in Different Habitats in an Erman’s Birch Forest

(2016) Teng Yang et al.   Frontiers in Microbiology

Co-occurrence Analysis of Microbial Taxa in the Atlantic Ocean Reveals High Connectivity in the Free-Living Bacterioplankton

(2016) Mathias Milici et al.   Frontiers in Microbiology

Diversity and Composition of the Leaf Mycobiome of Beech (Fagus sylvatica) Are Affected by Local Habitat Conditions and Leaf Biochemistry

(2016) Martin Unterseher et al.   PLoS One

Topological distortion and reorganized modular structure of gut microbial co-occurrence networks in inflammatory bowel disease

(2016) Steven N. Baldassano et al.   Scientific Reports

Multi-targeted metagenetic analysis of the influence of climate and environmental parameters on soil microbial communities along an elevational gradient

(2016) Anders Lanzén et al.   Scientific Reports

Plant-associated fungal communities in the light of meta’omics

(2015) Derek Peršoh   FUNGAL DIVERSITY

Vertical distribution of the soil microbiota along a successional gradient in a glacier forefield

(2015) Thomas Rime et al.   MOLECULAR ECOLOGY

Host genotype is an important determinant of the cereal phyllosphere mycobiome

(2015) Rumakanta Sapkota et al.   NEW PHYTOLOGIST

Strong altitudinal partitioning in the distributions of ectomycorrhizal fungi along a short (300 m) elevation gradient

(2015) Susan G. Jarvis et al.   NEW PHYTOLOGIST

Plant traits and taxonomy drive host associations in tropical phyllosphere fungal communities

(2014) Steven W. Kembel et al.   Botany

Contrasting elevational diversity patterns between eukaryotic soil microbes and plants

(2014) Congcong Shen et al.   ECOLOGY

The mid-domain effect in ectomycorrhizal fungi: range overlap along an elevation gradient on Mount Fuji, Japan

(2014) Yumiko Miyamoto et al.   ISME Journal

Large-scale fungal diversity assessment in the Andean Yungas forests reveals strong community turnover among forest types along an altitudinal gradient

(2014) József Geml et al.   MOLECULAR ECOLOGY

Genome-Wide Macrosynteny among Fusarium Species in the Gibberella fujikuroi Complex Revealed by Amplified Fragment Length Polymorphisms

(2014) Lieschen De Vos et al.   PLoS One

Fluvial network organization imprints on microbial co-occurrence networks

(2014) S. Widder et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Global diversity and geography of soil fungi

(2014) L. Tedersoo et al.   SCIENCE

Disentangling global soil fungal diversity

(2014) D. A. Wardle et al.   SCIENCE

Taxonomic relatedness shapes bacterial assembly in activated sludge of globally distributed wastewater treatment plants

(2013) Feng Ju et al.   ENVIRONMENTAL MICROBIOLOGY

Factors shaping community structure of endophytic fungi–evidence from the Pinus-Viscum-system

(2013) Derek Peršoh   FUNGAL DIVERSITY

Top-down controls on bacterial community structure: microbial network analysis of bacteria, T4-like viruses and protists

(2013) Cheryl-Emiliane T Chow et al.   ISME Journal

Spatial heterogeneity and co-occurrence patterns of human mucosal-associated intestinal microbiota

(2013) Zhigang Zhang et al.   ISME Journal

Pre- and post-zygotic reproductive isolation between co-occurringMussaenda pubescensvar.albaandM. shikokiana(Rubiaceae)

(2013) Shi Chen et al.   Journal of Integrative Plant Biology

Towards a unified paradigm for sequence-based identification of fungi

(2013) Urmas Kõljalg et al.   MOLECULAR ECOLOGY

Symbiotic fungi alter plant chemistry that discourages leaf-cutting ants

(2013) Catalina Estrada et al.   NEW PHYTOLOGIST

Yield Loss in Cereals, Caused by Fusarium culmorum and F. pseudograminearum, Is Related to Fungal DNA in Soil Prior to Planting, Rainfall, and Cereal Type

(2013) G. J. Hollaway et al.   PLANT DISEASE

Ion Torrent PGM as Tool for Fungal Community Analysis: A Case Study of Endophytes in Eucalyptus grandis Reveals High Taxonomic Diversity

(2013) Martin Kemler et al.   PLoS One

PNAS Plus: From the Cover: Microbial biogeography of wine grapes is conditioned by cultivar, vintage, and climate

(2013) N. A. Bokulich et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Fungal networks in yield-invigorating and -debilitating soils induced by prolonged potato monoculture

(2013) Lihua Lu et al.   SOIL BIOLOGY & BIOCHEMISTRY

Self-pollination in buds and homostyly inMussaenda shikokiana(Rubiaceae), a monomorphic species in a distylous clade

(2013) Shi CHEN et al.   Journal of Systematics and Evolution

Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data

(2013) Johan Bengtsson-Palme et al.   Methods in Ecology and Evolution

New primers to amplify the fungal ITS2 region - evaluation by 454-sequencing of artificial and natural communities

(2012) Katarina Ihrmark et al.   FEMS MICROBIOLOGY ECOLOGY

Fungal community on decomposing leaf litter undergoes rapid successional changes

(2012) Jana Voříšková et al.   ISME Journal

Amplicon-pyrosequencing-based detection of compositional shifts in bryophyte-associated fungal communities along an elevation gradient

(2012) Marie L. Davey et al.   MOLECULAR ECOLOGY

Beyond biogeographic patterns: processes shaping the microbial landscape

(2012) China A. Hanson et al.   NATURE REVIEWS MICROBIOLOGY

Microbial life in the phyllosphere

(2012) Julia A. Vorholt   NATURE REVIEWS MICROBIOLOGY

Microbial interactions: from networks to models

(2012) Karoline Faust et al.   NATURE REVIEWS MICROBIOLOGY

The composition of phyllosphere fungal assemblages of European beech (Fagus sylvatica ) varies significantly along an elevation gradient

(2012) Tristan Cordier et al.   NEW PHYTOLOGIST

Fungal endophyte communities reflect environmental structuring across a Hawaiian landscape

(2012) N. B. Zimmerman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Fungi: 1, 2, 3 … 5.1 million species?

(2011) Meredith Blackwell   AMERICAN JOURNAL OF BOTANY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Using network analysis to explore co-occurrence patterns in soil microbial communities

(2011) Albert Barberán et al.   ISME Journal

Coherent dynamics and association networks among lake bacterioplankton taxa

(2011) Alexander Eiler et al.   ISME Journal

Regional and local patterns of ectomycorrhizal fungal diversity and community structure along an altitudinal gradient in the Hyrcanian forests of northern Iran

(2011) Mohammad Bahram et al.   NEW PHYTOLOGIST

Light Converts Endosymbiotic Fungus to Pathogen, Influencing Seedling Survival and Niche-Space Filling of a Common Tropical Tree, Iriartea deltoidea

(2011) Patricia Álvarez-Loayza et al.   PLoS One

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

Endophytic fungi in European aspen (Populus tremula) leaves—diversity, detection, and a suggested correlation with herbivory resistance

(2010) Benedicte R. Albrectsen et al.   FUNGAL DIVERSITY

Colletotrichum gloeosporioides is not a common pathogen on tropical fruits

(2010) Sittisack Phoulivong et al.   FUNGAL DIVERSITY

Phylogenetic diversity and community structure of anaerobic gut fungi (phylum Neocallimastigomycota) in ruminant and non-ruminant herbivores

(2010) Audra S Liggenstoffer et al.   ISME Journal

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Massively parallel 454 sequencing indicates hyperdiverse fungal communities in temperateQuercus macrocarpaphyllosphere

(2009) A. Jumpponen et al.   NEW PHYTOLOGIST

Fungal endophytes: diversity and functional roles

(2009) R. J. Rodriguez et al.   NEW PHYTOLOGIST

Impacts of Plant Symbiotic Fungi on Insect Herbivores: Mutualism in a Multitrophic Context

(2008) Sue E. Hartley et al.   Annual Review of Entomology

Endophytic fungi as biocontrol agents of Theobroma cacao pathogens

(2008) Luis C. Mejía et al.   BIOLOGICAL CONTROL

Ain't no mountain high enough: plant invasions reaching new elevations

(2008) Aníbal Pauchard et al.   FRONTIERS IN ECOLOGY AND THE ENVIRONMENT

Stress tolerance in plants via habitat-adapted symbiosis

(2008) Rusty J Rodriguez et al.   ISME Journal

Phyllosphere microbiology with special reference to diversity and plant genotype

(2008) J.M. Whipps et al.   JOURNAL OF APPLIED MICROBIOLOGY

Microbes on mountainsides: Contrasting elevational patterns of bacterial and plant diversity

(2008) J. A. Bryant et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA