Host availability drives distributions of fungal endophytes in the imperilled boreal realm

Environment and host as large-scale controls of ectomycorrhizal fungi

(2018) Sietse van der Linde et al.   NATURE

Structure and function of the global topsoil microbiome

(2018) Mohammad Bahram et al.   NATURE

Contemporaneous radiations of fungi and plants linked to symbiosis

(2018) François Lutzoni et al.   Nature Communications

Ancestral alliances: Plant mutualistic symbioses with fungi and bacteria

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Evolutionary conservation of a core root microbiome across plant phyla along a tropical soil chronosequence

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Research priorities for harnessing plant microbiomes in sustainable agriculture

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The Plant Microbiota: Systems-Level Insights and Perspectives

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Experimental warming alters potential function of the fungal community in boreal forest

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Contributions of North American endophytes to the phylogeny, ecology, and taxonomy of Xylariaceae (Sordariomycetes, Ascomycota)

(2016) Jana M. U’Ren et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Error filtering, pair assembly and error correction for next-generation sequencing reads

(2015) Robert C. Edgar et al.   BIOINFORMATICS

Boreal forest health and global change

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Global diversity and geography of soil fungi

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Climate affects symbiotic fungal endophyte diversity and performance

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Anticipating the consequences of climate change for Canada’s boreal forest ecosystems

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MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Tree Migration-Rates: Narrowing the Gap between Inferred Post-Glacial Rates and Projected Rates

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Not as Ubiquitous as We Thought: Taxonomic Crypsis, Hidden Diversity and Cryptic Speciation in the Cosmopolitan Fungus Thelonectria discophora (Nectriaceae, Hypocreales, Ascomycota)

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Roots and Associated Fungi Drive Long-Term Carbon Sequestration in Boreal Forest

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Host and geographic structure of endophytic and endolichenic fungi at a continental scale

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Is the Mantel correlogram powerful enough to be useful in ecological analysis? A simulation study

(2012) Daniel Borcard et al.   ECOLOGY

Rapid responses of soil microorganisms improve plant fitness in novel environments

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Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi

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Fungal endophyte communities reflect environmental structuring across a Hawaiian landscape

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UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Aligning short reads to reference alignments and trees

(2011) Simon A. Berger et al.   BIOINFORMATICS

Culturing and direct PCR suggest prevalent host generalism among diverse fungal endophytes of tropical forest grasses

(2011) K. Lindsay Higgins et al.   MYCOLOGIA

A drought-induced pervasive increase in tree mortality across Canada's boreal forests

(2011) Changhui Peng et al.   Nature Climate Change

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

The UNITE database for molecular identification of fungi - recent updates and future perspectives

(2010) Kessy Abarenkov et al.   NEW PHYTOLOGIST

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A Phylogenetic Estimation of Trophic Transition Networks for Ascomycetous Fungi: Are Lichens Cradles of Symbiotrophic Fungal Diversification?

(2009) A. Elizabeth Arnold et al.   SYSTEMATIC BIOLOGY

Stress tolerance in plants via habitat-adapted symbiosis

(2008) Rusty J Rodriguez et al.   ISME Journal

Forests and Climate Change: Forcings, Feedbacks, and the Climate Benefits of Forests

(2008) G. B. Bonan   SCIENCE