Fungal taxonomy and sequence-based nomenclature

Isolation of an archaeon at the prokaryote–eukaryote interface

(2020) Hiroyuki Imachi et al.   NATURE

Author Correction: A complete domain-to-species taxonomy for Bacteria and Archaea

(2020) Donovan H. Parks et al.   NATURE BIOTECHNOLOGY

Toward a Fully Resolved Fungal Tree of Life

(2020) Timothy Y. James et al.   Annual Review of Microbiology

List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ

(2020) Aidan C. Parte et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Convolutional neural networks improve fungal classification

(2020) Duong Vu et al.   Scientific Reports

GlobalFungi, a global database of fungal occurrences from high-throughput-sequencing metabarcoding studies

(2020) Tomáš Větrovský et al.   Scientific Data

Roadmap for naming uncultivated Archaea and Bacteria

(2020) Alison E. Murray et al.   Nature Microbiology

Past, present, and future perspectives of environmental DNA (eDNA) metabarcoding: A systematic review in methods, monitoring, and applications of global eDNA

(2019) Krista M. Ruppert et al.   Global Ecology and Conservation

A census-based estimate of Earth's bacterial and archaeal diversity

(2019) Stilianos Louca et al.   PLOS BIOLOGY

Variation in the internal transcribed spacer (ITS) region of Phakopsora pachyrhizi and implications for molecular diagnostic assays

(2019) Tomás Allen Rush et al.   PLANT DISEASE

Genotypes and population genetics of cryptococcus neoformans and cryptococcus gattii species complexes in Europe and the mediterranean area

(2019) Massimo Cogliati et al.   FUNGAL GENETICS AND BIOLOGY

Database resources of the National Center for Biotechnology Information

(2019) Eric W Sayers et al.   NUCLEIC ACIDS RESEARCH

OUP accepted manuscript

(2018)   MEDICAL MYCOLOGY

Phylogeny and genetic diversity of the banana Fusarium wilt pathogen Fusarium oxysporum f. sp. cubense in the Indonesian centre of origin

(2018) N. Maryani et al.   STUDIES IN MYCOLOGY

New light on names and naming of dark taxa

(2018) Martin Ryberg et al.   MycoKeys

Formal description of sequence-based voucherless Fungi: promises and pitfalls, and how to resolve them

(2018) Robert Lücking et al.   IMA Fungus

Ten reasons why a sequence-based nomenclature is not useful for fungi anytime soon

(2018) Marco Thines et al.   IMA Fungus

Great differences in performance and outcome of high-throughput sequencing data analysis platforms for fungal metabarcoding

(2018) Sten Anslan et al.   MycoKeys

Tempo and Mode of Genome Evolution in the Budding Yeast Subphylum

(2018) Xing-Xing Shen et al.   CELL

The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications

(2018) Rolf Henrik Nilsson et al.   NUCLEIC ACIDS RESEARCH

Dismantling Marchandiomphalina into Agonimia (Verrucariaceae) and Lawreymyces gen. nov. (Corticiaceae): setting a precedent to the formal recognition of thousands of voucherless fungi based on type sequences

(2017) Robert Lücking et al.   FUNGAL DIVERSITY

Bifiguratus adelaidae, gen. et sp. nov., a new member of Mucoromycotina in endophytic and soil-dwelling habitats

(2017) Terry J. Torres-Cruz et al.   MYCOLOGIA

Species boundaries in plant pathogenic fungi: a Colletotrichum case study

(2016) Fang Liu et al.   BMC EVOLUTIONARY BIOLOGY

Hawksworthiomyces gen. nov. (Ophiostomatales), illustrates the urgency for a decision on how to name novel taxa known only from environmental nucleic acid sequences (ENAS)

(2016) Z. Wilhelm de Beer et al.   Fungal Biology

FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild

(2016) Nhu H. Nguyen et al.   Fungal Ecology

DNA barcoding and taxonomy: dark taxa and dark texts

(2016) Roderic D. M. Page   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The FAIR Guiding Principles for scientific data management and stewardship

(2016) Mark D. Wilkinson et al.   Scientific Data

Generic names in Magnaporthales

(2016) Ning Zhang et al.   IMA Fungus

Towards an integrated phylogenetic classification of the Tremellomycetes

(2015) X.-Z. Liu et al.   STUDIES IN MYCOLOGY

Significance and future role of microbial resource centers

(2015) Jörg Overmann   SYSTEMATIC AND APPLIED MICROBIOLOGY

On the reclassification of species assigned to Candida and other anamorphic ascomycetous yeast genera based on phylogenetic circumscription

(2014) Heide-Marie Daniel et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

MALDI-TOF MS Enables the Rapid Identification of the Major Molecular Types within the Cryptococcus neoformans/C. gattii Species Complex

(2012) Carolina Firacative et al.   PLoS One

Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi

(2012) C. L. Schoch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Discovery of novel intermediate forms redefines the fungal tree of life

(2011) Meredith D. M. Jones et al.   NATURE

Archaeorhizomycetes: Unearthing an Ancient Class of Ubiquitous Soil Fungi

(2011) A. Rosling et al.   SCIENCE

The Amsterdam Declaration on Fungal Nomenclature

(2011) David L. Hawksworth et al.   IMA Fungus

Identity of the downy mildew pathogens of basil, coleus, and sage with implications for quarantine measures

(2009) Marco Thines et al.