In-depth analyses of deep subsurface sediments using 454-pyrosequencing reveals a reservoir of buried fungal communities at record-breaking depths

Microorganisms persist at record depths in the subseafloor of the Canterbury Basin

(2014) Maria-Cristina Ciobanu et al.   ISME Journal

High Fungal Diversity and Abundance Recovered in the Deep-Sea Sediments of the Pacific Ocean

(2014) Wei Xu et al.   MICROBIAL ECOLOGY

From Dandruff to Deep-Sea Vents: Malassezia-like Fungi Are Ecologically Hyper-diverse

(2014) Anthony Amend   PLoS Pathogens

Towards a unified paradigm for sequence-based identification of fungi

(2013) Urmas Kõljalg et al.   MOLECULAR ECOLOGY

Gene expression in the deep biosphere

(2013) William D. Orsi et al.   NATURE

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Fungal community analysis by high-throughput sequencing of amplified markers - a user's guide

(2013) Björn D. Lindahl et al.   NEW PHYTOLOGIST

Deep Sequencing of Subseafloor Eukaryotic rRNA Reveals Active Fungi across Marine Subsurface Provinces

(2013) William Orsi et al.   PLoS One

The Deep Viriosphere: Assessing the Viral Impact on Microbial Community Dynamics in the Deep Subsurface

(2013) R. E. Anderson et al.   Reviews in Mineralogy & Geochemistry

The Deep, Dark Energy Biosphere: Intraterrestrial Life on Earth

(2012) Katrina J. Edwards et al.   Annual Review of Earth and Planetary Sciences

Bacterial dominance in subseafloor sediments characterized by methane hydrates

(2012) Brandon R. Briggs et al.   FEMS MICROBIOLOGY ECOLOGY

Fungal diversity in deep-sea extreme environments

(2012) Yuriko Nagano et al.   Fungal Ecology

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Global distribution of microbial abundance and biomass in subseafloor sediment

(2012) J. Kallmeyer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Marine Fungi: Their Ecology and Molecular Diversity

(2011) Thomas A. Richards et al.   Annual Review of Marine Science

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Molecular evidence that deep-branching fungi are major fungal components in deep-sea methane cold-seep sediments

(2011) Takahiko Nagahama et al.   ENVIRONMENTAL MICROBIOLOGY

Microbial eukaryote life in the new hypersaline deep-sea basin Thetis

(2011) Alexandra Stock et al.   EXTREMOPHILES

Metagenomics of the subsurface Brazos-Trinity Basin (IODP site 1320): comparison with other sediment and pyrosequenced metagenomes

(2011) Jennifer F Biddle et al.   ISME Journal

Microbial Ecology of the Dark Ocean above, at, and below the Seafloor

(2011) B. N. Orcutt et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Marine subsurface eukaryotes: the fungal majority

(2010) Virginia P. Edgcomb et al.   ENVIRONMENTAL MICROBIOLOGY

Fungal diversity in deep-sea sediments – the presence of novel fungal groups

(2010) Yuriko Nagano et al.   Fungal Ecology

Fungal Community Analysis in the Deep-Sea Sediments of the Central Indian Basin by Culture-Independent Approach

(2010) Purnima Singh et al.   MICROBIAL ECOLOGY

Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water

(2010) THORSTEN STOECK et al.   MOLECULAR ECOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

The UNITE database for molecular identification of fungi - recent updates and future perspectives

(2010) Kessy Abarenkov et al.   NEW PHYTOLOGIST

Fungal Diversity in Deep-Sea Hydrothermal Ecosystems

(2009) T. Le Calvez et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Diversity of culturable marine filamentous fungi from deep-sea hydrothermal vents

(2009) Gaëtan Burgaud et al.   ENVIRONMENTAL MICROBIOLOGY

Fungal diversity in oxygen-depleted regions of  the Arabian Sea revealed by targeted environmental sequencing combined with cultivation

(2009) Cathrine S. Jebaraj et al.   FEMS MICROBIOLOGY ECOLOGY

Species ofFusariumIsolated from River and Sea Water of Southeastern Spain and Pathogenicity on Four Plant Species

(2009) D. Palmero et al.   PLANT DISEASE

Molecular and ultrastructural characterization of two ascomycetes found on sunken wood off Vanuatu Islands in the deep Pacific Ocean

(2009) Joëlle Dupont et al.  

Molecular Detection of Fungal Communities in the Hawaiian Marine Sponges Suberites zeteki and Mycale armata

(2008) Z. Gao et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Microbial eukaryotes in the hypersaline anoxic L'Atalante deep-sea basin

(2008) Eva Alexander et al.   ENVIRONMENTAL MICROBIOLOGY

Prokaryotic biodiversity and activity in the deep subseafloor biosphere

(2008) John C. Fry et al.   FEMS MICROBIOLOGY ECOLOGY

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

(2008) J. R. Cole et al.   NUCLEIC ACIDS RESEARCH

Marine yeasts—a review

(2008) Sreedevi N. Kutty et al.   YEAST