Building consensus around the assessment and interpretation of Symbiodiniaceae diversity

Thermal stress triggers productive viral infection of a key coral reef symbiont

(2022) Carsten G. B. Grupstra et al.   ISME Journal

Toward bio‐optical phenotyping of reef‐forming corals using Light‐Induced Fluorescence Transient‐Fast Repetition Rate fluorometry

(2022) David J. Suggett et al.   LIMNOLOGY AND OCEANOGRAPHY-METHODS

Gender and geographical disparity in editorial boards of journals in psychology and neuroscience

(2022) Eleanor R. Palser et al.   NATURE NEUROSCIENCE

Reef environments shape microbial partners in a highly connected coral population

(2022) N. G. Kriefall et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Microbiome Structuring Within a Coral Colony and Along a Sedimentation Gradient

(2022) James E. Fifer et al.   Frontiers in Marine Science

Cnidarian-Symbiodiniaceae symbiosis establishment is independent of photosynthesis

(2022) Robert E. Jinkerson et al.   CURRENT BIOLOGY

Genome-powered classification of microbial eukaryotes: focus on coral algal symbionts

(2022) Katherine E. Dougan et al.   TRENDS IN MICROBIOLOGY

Thank you for biting: dispersal of beneficial microbiota through 'antagonistic' interactions

(2022) C.G.B. Grupstra et al.   TRENDS IN MICROBIOLOGY

Alignment-Free Analysis of Whole-Genome Sequences From Symbiodiniaceae Reveals Different Phylogenetic Signals in Distinct Regions

(2022) Rosalyn Lo et al.   Frontiers in Plant Science

Proteome metabolome and transcriptome data for three Symbiodiniaceae under ambient and heat stress conditions

(2022) Emma F. Camp et al.   Scientific Data

Cultured Bacteria Provide Insight into the Functional Potential of the Coral-Associated Microbiome

(2022) Jie Li et al.   mSystems

Mutualistic dinoflagellates with big disparities in ribosomal DNA variation may confound estimates of symbiont diversity and ecology in the jellyfish Cotylorhiza tuberculata

(2022) Todd C. LaJeunesse et al.   SYMBIOSIS

Nuclear transformation of a dinoflagellate symbiont of corals

(2022) Sebastian G. Gornik et al.   Frontiers in Marine Science

High-accuracy long-read amplicon sequences using unique molecular identifiers with Nanopore or PacBio sequencing

(2021) Søren M. Karst et al.   NATURE METHODS

Equity, Diversity and Inclusion: Racial inequity in grant funding from the US National Institutes of Health

(2021) Michael A Taffe et al.   eLife

Turning the tide of parachute science

(2021) Paris V. Stefanoudis et al.   CURRENT BIOLOGY

Intracellular bacteria are common and taxonomically diverse in cultured and in hospite algal endosymbionts of coral reefs

(2021) Justin Maire et al.   ISME Journal

Haplotype-resolved diverse human genomes and integrated analysis of structural variation

(2021) Peter Ebert et al.   SCIENCE

Flexibility in Red Sea Tridacna maxima ‐Symbiodiniaceae associations supports environmental niche adaptation

(2021) Susann Rossbach et al.   Ecology and Evolution

Metabolomic signatures of coral bleaching history

(2021) Ty N. F. Roach et al.   Nature Ecology & Evolution

Comparison of 15 dinoflagellate genomes reveals extensive sequence and structural divergence in family Symbiodiniaceae and genus Symbiodinium

(2021) Raúl A. González-Pech et al.   BMC BIOLOGY

A stony coral cell atlas illuminates the molecular and cellular basis of coral symbiosis, calcification, and immunity

(2021) Shani Levy et al.   CELL

Mutualistic microalgae co-diversify with reef corals that acquire symbionts during egg development

(2021) Kira E. Turnham et al.   ISME Journal

Miliolidium n. gen, a New Symbiodiniacean Genus Whose Members Associate with Soritid Foraminifera or are Free‐living

(2021) Xavier Pochon et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Comparative volatilomics of coral endosymbionts from one- and comprehensive two-dimensional gas chromatography approaches

(2021) Axel Olander et al.   MARINE BIOLOGY

Genomic variation of an endosymbiotic dinoflagellate ( Symbiodinium ‘fitti’ ) among closely related coral hosts

(2021) Hannah G. Reich et al.   MOLECULAR ECOLOGY

Transcription-dependent domain-scale three-dimensional genome organization in the dinoflagellate Breviolum minutum

(2021) Georgi K. Marinov et al.   NATURE GENETICS

Genetic and spatial organization of the unusual chromosomes of the dinoflagellate Symbiodinium microadriaticum

(2021) Ankita Nand et al.   NATURE GENETICS

Revisiting the rules of life for viruses of microorganisms

(2021) Adrienne M. S. Correa et al.   NATURE REVIEWS MICROBIOLOGY

Disabled in academia: to be or not to be, that is the question

(2021) Justin J. Yerbury et al.   TRENDS IN NEUROSCIENCES

Ocean science and advocacy work better when decolonized

(2021) Dyhia Belhabib   Nature Ecology & Evolution

Photophysiological Tolerance and Thermal Plasticity of Genetically Different Symbiodiniaceae Endosymbiont Species of Cnidaria

(2021) Vanessa Russnak et al.   Frontiers in Marine Science

A phylogenomic examination of Palmyra Atoll’s corallimorpharian invader

(2021) Kaitlyn P. Jacobs et al.   CORAL REEFS

Physiological diversity among sympatric, conspecific endosymbionts of coral (Cladocopium C1acro) from the Great Barrier Reef

(2021) V. H. Beltrán et al.   CORAL REEFS

Revival of Philozoon Geddes for host-specialized dinoflagellates, ‘zooxanthellae’, in animals from coastal temperate zones of northern and southern hemispheres

(2021) Todd C. LaJeunesse et al.   EUROPEAN JOURNAL OF PHYCOLOGY

Different functional traits among closely related algal symbionts dictate stress endurance for vital Indo‐Pacific reef‐building corals

(2021) Kenneth D. Hoadley et al.   GLOBAL CHANGE BIOLOGY

Cell wall proteomic analysis of the cnidarian photosymbionts Breviolum minutum and Cladocopium goreaui

(2021) Giada Tortorelli et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Spatial organization of dinoflagellate genomes: Novel insights and remaining critical questions

(2021) Senjie Lin et al.   JOURNAL OF PHYCOLOGY

Contrasting heat stress response patterns of coral holobionts across the Red Sea suggest distinct mechanisms of thermal tolerance

(2021) Christian R. Voolstra et al.   MOLECULAR ECOLOGY

Unique environmental Symbiodiniaceae diversity at an isolated island in the northwestern Pacific

(2021) Makiko Yorifuji et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

How Latin American researchers suffer in science

(2021) Ana M. Valenzuela-Toro et al.   NATURE

Symbiodinium microadriaticum (coral microalgal endosymbiont)

(2021) Christian R. Voolstra et al.   TRENDS IN GENETICS

Direct evidence of sex and a hypothesis about meiosis in Symbiodiniaceae

(2021) R. I. Figueroa et al.   Scientific Reports

Promoting inclusive metrics of success and impact to dismantle a discriminatory reward system in science

(2021) Sarah W. Davies et al.   PLOS BIOLOGY

Ten simple rules for Global North researchers to stop perpetuating helicopter research in the Global South

(2021) Danny Haelewaters et al.   PLoS Computational Biology

Zoantharian Endosymbiont Community Dynamics During a Stress Event

(2021) Yu Fujiwara et al.   Frontiers in Microbiology

Insights into the Cultured Bacterial Fraction of Corals

(2021) Michael Sweet et al.   mSystems

Guidelines for healthy global scientific collaborations

(2021) Dolors Armenteras   Nature Ecology & Evolution

Consensus Guidelines for Advancing Coral Holobiont Genome and Specimen Voucher Deposition

(2021) Christian R. Voolstra et al.   Frontiers in Marine Science

Signatures of Adaptation and Acclimatization to Reef Flat and Slope Habitats in the Coral Pocillopora damicornis

(2021) Shelby R. Marhoefer et al.   Frontiers in Marine Science

Molecular Mechanisms of Coral Persistence Within Highly Urbanized Locations in the Port of Miami, Florida

(2021) Ewelina T. Rubin et al.   Frontiers in Marine Science

Representation of Women Among Editors in Chief of Leading Medical Journals

(2021) Ana-Catarina Pinho-Gomes et al.   JAMA Network Open

Facing Racism and Sexism in Science by Fighting Against Social Implicit Bias: A Latina and Black Woman’s Perspective

(2021) Karin C. Calaza et al.   Frontiers in Psychology

Symbiont shuffling induces differential DNA methylation responses to thermal stress in the coral Montastraea cavernosa

(2021) Javier A. Rodriguez‐Casariego et al.   MOLECULAR ECOLOGY

Census of heat tolerance among Florida's threatened staghorn corals finds resilient individuals throughout existing nursery populations

(2021) Ross Cunning et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Elucidating gene expression adaptation of phylogenetically divergent coral holobionts under heat stress

(2021) Viridiana Avila-Magaña et al.   Nature Communications

Multi-Omics Revealing the Response Patterns of Symbiotic Microorganisms and Host Metabolism in Scleractinian Coral Pavona minuta to Temperature Stresses

(2021) Jiayuan Liang et al.   Metabolites

Limited Progress in Improving Gender and Geographic Representation in Coral Reef Science

(2021) Gabby N. Ahmadia et al.   Frontiers in Marine Science

Endosymbiotic dinoflagellates pump iron: differences in iron and other trace metal needs among the Symbiodiniaceae

(2020) Hannah G. Reich et al.   CORAL REEFS

Symbiodiniaceae‐bacteria interactions: rethinking metabolite exchange in reef‐building corals as multi‐partner metabolic networks

(2020) Jennifer L. Matthews et al.   ENVIRONMENTAL MICROBIOLOGY

Revealing changes in the microbiome of Symbiodiniaceae under thermal stress

(2020) Emma F. Camp et al.   ENVIRONMENTAL MICROBIOLOGY

Correlation between organelle genetic variation and RNA editing in dinoflagellates associated with the coral Acropora digitifera

(2020) Eiichi Shoguchi et al.   Genome Biology and Evolution

Symbiont community diversity is more variable in corals that respond poorly to stress

(2020) Lauren I. Howe‐Kerr et al.   GLOBAL CHANGE BIOLOGY

Unique combinations of coral host and algal symbiont genotypes reflect intraspecific variation in heat stress responses among colonies of the reef-building coral, Montipora digitata

(2020) Javid Kavousi et al.   MARINE BIOLOGY

Corals in the hottest reefs in the world exhibit symbiont fidelity not flexibility

(2020) Emily J. Howells et al.   MOLECULAR ECOLOGY

Historical comparison of gender inequality in scientific careers across countries and disciplines

(2020) Junming Huang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comparison of Symbiodiniaceae diversities in different members of a Palythoa species complex (Cnidaria: Anthozoa: Zoantharia)—implications for ecological adaptations to different microhabitats

(2020) Masaru Mizuyama et al.   PeerJ

Genome Improvement and Core Gene Set Refinement of Fugacium kawagutii

(2020) Tangcheng Li et al.   Microorganisms

Uncovering the role of Symbiodiniaceae assemblage composition and abundance in coral bleaching response by minimizing sampling and evolutionary biases

(2020) Timothy D. Swain et al.   BMC MICROBIOLOGY

Fine-scale delineation of Symbiodiniaceae genotypes on a previously bleached central Red Sea reef system demonstrates a prevalence of coral host-specific associations

(2020) B. C. C. Hume et al.   CORAL REEFS

Description of Freudenthalidium gen. nov. and Halluxium gen. nov. to Formally Recognize Clades Fr3 and H as Genera in the Family Symbiodiniaceae (Dinophyceae) 1

(2020) Matthew R. Nitschke et al.   JOURNAL OF PHYCOLOGY

Genetic tool development in marine protists: emerging model organisms for experimental cell biology

(2020) Drahomíra Faktorová et al.   NATURE METHODS

Tara Oceans: towards global ocean ecosystems biology

(2020) Shinichi Sunagawa et al.   NATURE REVIEWS MICROBIOLOGY

The Diversity–Innovation Paradox in Science

(2020) Bas Hofstra et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Host and Symbiont Cell Cycle Coordination Is Mediated by Symbiotic State, Nutrition, and Partner Identity in a Model Cnidarian-Dinoflagellate Symbiosis

(2020) Trevor R. Tivey et al.   mBio

Chronic disturbance modulates symbiont (Symbiodiniaceae) beta diversity on a coral reef

(2020) Danielle C. Claar et al.   Scientific Reports

Depth Influences Symbiodiniaceae Associations Among Montastraea cavernosa Corals on the Belize Barrier Reef

(2020) Ryan J. Eckert et al.   Frontiers in Microbiology

Genome Size, rDNA Copy, and qPCR Assays for Symbiodiniaceae

(2020) Osama S. Saad et al.   Frontiers in Microbiology

Fluorescence-Activated Cell Sorting for the Isolation of Scleractinian Cell Populations

(2020) Grace A. Snyder et al.   Jove-Journal of Visualized Experiments

Taxonomic scheme of the order Chaetophorales (Chlorophyceae, Chlorophyta) based on chloroplast genomes

(2020) Benwen Liu et al.   BMC GENOMICS

Low Symbiodiniaceae diversity in a turbid marginal reef environment

(2020) E. G. Smith et al.   CORAL REEFS

Standardized short‐term acute heat stress assays resolve historical differences in coral thermotolerance across microhabitat reef sites

(2020) Christian R. Voolstra et al.   GLOBAL CHANGE BIOLOGY

Competitive traits of coral symbionts may alter the structure and function of the microbiome

(2020) Shelby E. McIlroy et al.   ISME Journal

Two decades of little change: An analysis of U.S. medical school basic science faculty by sex, race/ethnicity, and academic rank

(2020) Christopher L. Bennett et al.   PLoS One

Sex in Symbiodiniaceae dinoflagellates: genomic evidence for independent loss of the canonical synaptonemal complex

(2020) Sarah Shah et al.   Scientific Reports

STAGdb: a 30K SNP genotyping array and Science Gateway for Acropora corals and their dinoflagellate symbionts

(2020) S. A. Kitchen et al.   Scientific Reports

“Symbio-Cryobank”: Toward the Development of a Cryogenic Archive for the Coral Reef Dinoflagellate Symbiont Symbiodiniaceae

(2020) Selene Di Genio et al.   BIOPRESERVATION AND BIOBANKING

Methylation Pattern and Expression Dynamics of Methylase and Photosystem Genes Under varying light Intensities in Fugacium kawagutii (Symbiodiniaceae)

(2020) Feng Yang et al.   JOURNAL OF PHYCOLOGY

Cladocopium community divergence in two Acropora coral hosts across multiple spatial scales

(2020) SW Davies et al.   MOLECULAR ECOLOGY

Benchmarking DNA Methylation Assays in a reef‐building coral

(2020) Groves Dixon et al.   Molecular Ecology Resources

Cladocopium infistulum sp. nov. (Dinophyceae), a thermally tolerant dinoflagellate symbiotic with giant clams from the western Pacific Ocean

(2020) Sung Yeon Lee et al.   PHYCOLOGIA

Disadvantages in preparing and publishing scientific papers caused by the dominance of the English language in science: The case of Colombian researchers in biological sciences

(2020) Valeria Ramírez-Castañeda   PLoS One

Host-symbiont coevolution, cryptic structure, and bleaching susceptibility, in a coral species complex (Scleractinia; Poritidae)

(2020) Z. H. Forsman et al.   Scientific Reports

Ten simple rules for building an antiracist lab

(2020) V. Bala Chaudhary et al.   PLoS Computational Biology

PhenoChip: A single-cell phenomic platform for high-throughput photophysiological analyses of microalgae

(2020) Lars Behrendt et al.   Science Advances

Palaeoclimate ocean conditions shaped the evolution of corals and their skeletons through deep time

(2020) Andrea M. Quattrini et al.   Nature Ecology & Evolution

Genome-Wide DNA Methylation Analysis Reveals a Conserved Epigenetic Response to Seasonal Environmental Variation in the Staghorn Coral Acropora cervicornis

(2020) Javier A. Rodríguez-Casariego et al.   Frontiers in Marine Science

Limitations of Using Cultured Algae to Study Cnidarian‐Algal Symbioses and Suggestions for Future Studies

(2020) Shumpei Maruyama et al.   JOURNAL OF PHYCOLOGY

Unlocking the phylogenetic diversity, primary habitats, and abundances of free‐living Symbiodiniaceae on a coral reef

(2020) Lisa Fujise et al.   MOLECULAR ECOLOGY

An enhanced target-enrichment bait set for Hexacorallia provides phylogenomic resolution of the staghorn corals (Acroporidae) and close relatives

(2020) Peter F. Cowman et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Fecal pellets of giant clams as a route for transporting Symbiodiniaceae to corals

(2020) Masami Umeki et al.   PLoS One

Dynamic symbioses reveal pathways to coral survival through prolonged heatwaves

(2020) Danielle C. Claar et al.   Nature Communications

Adaptive divergence, neutral panmixia, and algal symbiont population structure in the temperate coral Astrangia poculata along the Mid-Atlantic United States

(2020) Hannah E. Aichelman et al.   PeerJ

State of the Field in Multi-Omics Research: From Computational Needs to Data Mining and Sharing

(2020) Michal Krassowski et al.   Frontiers in Genetics

Spatial proteomics: a powerful discovery tool for cell biology

(2019) Emma Lundberg et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Combining LOPIT with differential ultracentrifugation for high-resolution spatial proteomics

(2019) Aikaterini Geladaki et al.   Nature Communications

Diversity of endosymbiotic Symbiodiniaceae in giant clams at Dongsha Atoll, northern South China Sea

(2019) Sherlyn Sher Qing Lim et al.   SYMBIOSIS

The genetic intractability of Symbiodinium microadriaticum to standard algal transformation methods

(2019) Jit Ern Chen et al.   PLoS One

SymPortal: a novel analytical framework and platform for coral algal symbiont next-generation sequencing ITS2 profiling

(2019) B. C. C. Hume et al.   Molecular Ecology Resources

Recruit symbiosis establishment and Symbiodiniaceae composition influenced by adult corals and reef sediment

(2019) A. Ali et al.   CORAL REEFS

Genetic relationships of the hydrocoral Millepora alcicornis and its symbionts within and between locations across the Atlantic

(2019) Laura Rodríguez et al.   CORAL REEFS

Relative stability of the Pocillopora acuta microbiome throughout a thermal stress event

(2019) Hannah E. Epstein et al.   CORAL REEFS

Proteomics quantifies protein expression changes in a model cnidarian colonised by a thermally tolerant but suboptimal symbiont

(2019) Ashley E. Sproles et al.   ISME Journal

Reducing bias: accounting for the order of co–first authors

(2019) Arturo Casadevall et al.   JOURNAL OF CLINICAL INVESTIGATION

Some perspective on Molecular Ecology perspectives: Are women being left out?

(2019) Regina S. Baucom et al.   MOLECULAR ECOLOGY

Genome Evolution of Coral Reef Symbionts as Intracellular Residents

(2019) Raúl A. González-Pech et al.   TRENDS IN ECOLOGY & EVOLUTION

Towards an in-depth characterization of Symbiodiniaceae in tropical giant clams via metabarcoding of pooled multi-gene amplicons

(2019) Xavier Pochon et al.   PeerJ

Inter-partner specificity limits the acquisition of thermotolerant symbionts in a model cnidarian-dinoflagellate symbiosis

(2019) Yasmin Gabay et al.   ISME Journal

What drives phenotypic divergence among coral clonemates of Acropora palmata ?

(2019) Meghann K. Durante et al.   MOLECULAR ECOLOGY

Host–symbiont combinations dictate the photo-physiological response of reef-building corals to thermal stress

(2019) Kenneth D. Hoadley et al.   Scientific Reports

Multi-gene incongruence consistent with hybridisation in Cladocopium (Symbiodiniaceae), an ecologically important genus of coral reef symbionts

(2019) Joshua I. Brian et al.   PeerJ

Photosynthetic capacity of the endosymbiotic dinoflagellate Cladocopium sp. is preserved during digestion of its jellyfish host Mastigias papua by the anemone Entacmaea medusivora

(2019) Félix Vega de Luna et al.   FEMS MICROBIOLOGY ECOLOGY

Environmental latitudinal gradients and host‐specificity shape Symbiodiniaceae distribution in Red Sea Porites corals

(2019) Tullia I. Terraneo et al.   JOURNAL OF BIOGEOGRAPHY

Gender distribution in psychiatry journals' editorial boards worldwide

(2019) Dawood M. Hafeez et al.   COMPREHENSIVE PSYCHIATRY

Evidence that inconsistent gene prediction can mislead analysis of dinoflagellate genomes

(2019) Yibi Chen et al.   JOURNAL OF PHYCOLOGY

Increasing gender diversity in the STEM research workforce

(2019) Carol W. Greider et al.   SCIENCE

Coral endosymbionts (Symbiodiniaceae) emit species-specific volatilomes that shift when exposed to thermal stress

(2019) Caitlin A. Lawson et al.   Scientific Reports

Competition and succession among coral endosymbionts

(2019) Shelby E. McIlroy et al.   Ecology and Evolution

Gender diversity of editorial boards and gender differences in the peer review process at six journals of ecology and evolution

(2019) Charles W. Fox et al.   Ecology and Evolution

Topic choice contributes to the lower rate of NIH awards to African-American/black scientists

(2019) Travis A. Hoppe et al.   Science Advances

Free‐living and symbiotic lifestyles of a thermotolerant coral endosymbiont display profoundly distinct transcriptomes under both stable and heat stress conditions

(2019) Anthony J. Bellantuono et al.   MOLECULAR ECOLOGY

Unprofessional peer reviews disproportionately harm underrepresented groups in STEM

(2019) Nyssa J. Silbiger et al.   PeerJ

Two divergent Symbiodinium genomes reveal conservation of a gene cluster for sunscreen biosynthesis and recently lost genes

(2018) Eiichi Shoguchi et al.   BMC GENOMICS

Coral color and depth drive symbiosis ecology of Montipora capitata in Kāne‘ohe Bay, O‘ahu, Hawai‘i

(2018) T. Innis et al.   CORAL REEFS

Intra- and interspecific variation and phenotypic plasticity in thylakoid membrane properties across two Symbiodinium clades

(2018) Joost S. Mansour et al.   CORAL REEFS

Cell Cycle Dynamics of Cultured Coral Endosymbiotic Microalgae (Symbiodinium ) Across Different Types (Species) Under Alternate Light and Temperature Conditions

(2018) Lisa Fujise et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Adaptation to reef habitats through selection on the coral animal and its associated microbiome

(2018) Madeleine J. H. van Oppen et al.   MOLECULAR ECOLOGY

Multi-omics analysis of thermal stress response in a zooxanthellate cnidarian reveals the importance of associating with thermotolerant symbionts

(2018) Maha J. Cziesielski et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Phylogenetic analyses of Symbiodinium isolated from Waminoa and their anthozoan hosts in the Ryukyu Archipelago, southern Japan

(2018) Shiori Kunihiro et al.   SYMBIOSIS

Recurrent acquisition of cytosine methyltransferases into eukaryotic retrotransposons

(2018) Alex de Mendoza et al.   Nature Communications

An improved primer set and amplification protocol with increased specificity and sensitivity targeting the Symbiodinium ITS2 region

(2018) Benjamin C.C. Hume et al.   PeerJ

Epigenome-associated phenotypic acclimatization to ocean acidification in a reef-building coral

(2018) Yi Jin Liew et al.   Science Advances

Systematic Revision of Symbiodiniaceae Highlights the Antiquity and Diversity of Coral Endosymbionts

(2018) Todd C. LaJeunesse et al.   CURRENT BIOLOGY

Role of host genetics and heat tolerant algal symbionts in sustaining populations of the endangered coral Orbicella faveolata in the Florida Keys with ocean warming

(2018) Derek P. Manzello et al.   GLOBAL CHANGE BIOLOGY

Initial evidence of functional siRNA machinery in dinoflagellates

(2018) Chao Zhang et al.   HARMFUL ALGAE

New Species of Closely Related Endosymbiotic Dinoflagellates in the Greater Caribbean have Niches Corresponding to Host Coral Phylogeny

(2018) Allison M. Lewis et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Role of gene body methylation in acclimatization and adaptation in a basal metazoan

(2018) Groves Dixon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Core genes in diverse dinoflagellate lineages include a wealth of conserved dark genes with unknown functions

(2018) Timothy G. Stephens et al.   Scientific Reports

Coral epigenetic responses to nutrient stress: Histone H2A.X phosphorylation dynamics and DNA methylation in the staghorn coral Acropora cervicornis

(2018) Javier A. Rodriguez-Casariego et al.   Ecology and Evolution

Genotype and Phylogenetic Diversity of Symbiodinium ITS2 Sequences Within Clade C in Three Typical Coral Species from Luhuitou Fringing Reef of the South China Sea

(2018) Sanqiang Gong et al.   Journal of Ocean University of China

Rare symbionts may contribute to the resilience of coral–algal assemblages

(2017) Maren Ziegler et al.   ISME Journal

Host specificity of Symbiodinium variants revealed by an ITS2 metahaplotype approach

(2017) Edward G Smith et al.   ISME Journal

Photophysiological and thermal tolerance of various genotypes of the coral endosymbiont Symbiodinium sp. (Dinophyceae)

(2017) Valerie Grégoire et al.   JOURNAL OF APPLIED PHYCOLOGY

Validation and description of Symbiodinium microadriaticum , the type species of Symbiodinium (Dinophyta)

(2017) Todd C. LaJeunesse   JOURNAL OF PHYCOLOGY

Sibling species of mutualistic Symbiodinium clade G from bioeroding sponges in the western Pacific and western Atlantic oceans

(2017) Blake D. Ramsby et al.   JOURNAL OF PHYCOLOGY

Symbiodinium thermophilum symbionts in Porites harrisoni and Cyphastrea microphthalma in the northern Persian Gulf, Iran

(2017) Tooba Varasteh et al.   JOURNAL OF THE MARINE BIOLOGICAL ASSOCIATION OF THE UNITED KINGDOM

A molecular physiology basis for functional diversity of hydrogen peroxide production amongst Symbiodinium spp. (Dinophyceae)

(2017) Samantha Goyen et al.   MARINE BIOLOGY

Population genetics of reef coral endosymbionts (Symbiodinium , Dinophyceae)

(2017) D. J. Thornhill et al.   MOLECULAR ECOLOGY

Evidence for miRNA-mediated modulation of the host transcriptome in cnidarian-dinoflagellate symbiosis

(2017) Sebastian Baumgarten et al.   MOLECULAR ECOLOGY

Coral reefs in the Anthropocene

(2017) Terry P. Hughes et al.   NATURE

Virus–host interactions and their roles in coral reef health and disease

(2017) Rebecca Vega Thurber et al.   NATURE REVIEWS MICROBIOLOGY

PacBio metabarcoding of Fungi and other eukaryotes: errors, biases and perspectives

(2017) Leho Tedersoo et al.   NEW PHYTOLOGIST

Symbiodinium glynnii sp. nov., a species of stress-tolerant symbiotic dinoflagellates from pocilloporid and montiporid corals in the Pacific Ocean

(2017) Drew C. Wham et al.   PHYCOLOGIA

Comparative growth rates of cultured marine dinoflagellates in the genus Symbiodinium and the effects of temperature and light

(2017) Anke Klueter et al.   PLoS One

Optimal nutrient exchange and immune responses operate in partner specificity in the cnidarian-dinoflagellate symbiosis

(2017) Jennifer L. Matthews et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Intraspecific and interspecific variation in thermotolerance and photoacclimation in Symbiodinium dinoflagellates

(2017) Erika M. Díaz-Almeyda et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Symbiotic Dinoflagellate Functional Diversity Mediates Coral Survival under Ecological Crisis

(2017) David J. Suggett et al.   TRENDS IN ECOLOGY & EVOLUTION

Defining the Core Microbiome in Corals’ Microbial Soup

(2017) Alejandra Hernandez-Agreda et al.   TRENDS IN MICROBIOLOGY

The Other Microeukaryotes of the Coral Reef Microbiome

(2017) T.D. Ainsworth et al.   TRENDS IN MICROBIOLOGY

Defining the core microbiome of the symbiotic dinoflagellate, Symbiodinium

(2017) Caitlin A. Lawson et al.   Environmental Microbiology Reports

Algorithm for post-clustering curation of DNA amplicon data yields reliable biodiversity estimates

(2017) Tobias Guldberg Frøslev et al.   Nature Communications

Bacterial community dynamics are linked to patterns of coral heat tolerance

(2017) Maren Ziegler et al.   Nature Communications

Rapid adaptive responses to climate change in corals

(2017) Gergely Torda et al.   Nature Climate Change

mixOmics: An R package for ‘omics feature selection and multiple data integration

(2017) Florian Rohart et al.   PLoS Computational Biology

Condition-specific RNA editing in the coral symbiont Symbiodinium microadriaticum

(2017) Yi Jin Liew et al.   PLoS Genetics

A preliminary survey of zoantharian endosymbionts shows high genetic variation over small geographic scales on Okinawa-jima Island, Japan

(2017) Hatsuko Noda et al.   PeerJ

Using high-throughput sequencing of ITS2 to describe Symbiodinium metacommunities in St. John, US Virgin Islands

(2017) Ross Cunning et al.   PeerJ

Stress and stability: applying the Anna Karenina principle to animal microbiomes

(2017) Jesse R. Zaneveld et al.   Nature Microbiology

Our path to better science in less time using open data science tools

(2017) Julia S. Stewart Lowndes et al.   Nature Ecology & Evolution

The effects of elevated seawater temperatures on Caribbean gorgonian corals and their algal symbionts, Symbiodinium spp.

(2017) Tamar L. Goulet et al.   PLoS One

Heritability of the Symbiodinium community in vertically- and horizontally-transmitting broadcast spawning corals

(2017) Kate M. Quigley et al.   Scientific Reports

Publish (in English) or perish: The effect on citation rate of using languages other than English in scientific publications

(2016) Mario S. Di Bitetti et al.   AMBIO

Insights into the Coral Microbiome: Underpinning the Health and Resilience of Reef Ecosystems

(2016) David G. Bourne et al.   Annual Review of Microbiology

Temperature moderates the infectiousness of two conspecific Symbiodinium strains isolated from the same host population

(2016) Thomas D. Hawkins et al.   ENVIRONMENTAL MICROBIOLOGY

Ocean acidification influences host DNA methylation and phenotypic plasticity in environmentally susceptible corals

(2016) Hollie M. Putnam et al.   Evolutionary Applications

Author-suggested reviewers: gender differences and influences on the peer review process at an ecology journal

(2016) Charles W. Fox et al.   FUNCTIONAL ECOLOGY

Gene Expression Variation Resolves Species and Individual Strains among Coral-Associated Dinoflagellates within the GenusSymbiodinium

(2016) John E. Parkinson et al.   Genome Biology and Evolution

Exploring the Symbiodinium rare biosphere provides evidence for symbiont switching in reef-building corals

(2016) Nadine M Boulotte et al.   ISME Journal

Evidence for a role of viruses in the thermal sensitivity of coral photosymbionts

(2016) Rachel Ashley Levin et al.   ISME Journal

Latitudinal variation in the symbiotic dinoflagellate Symbiodinium of the common reef zoantharian Palythoa tuberculosa on the Saudi Arabian coast of the Red Sea

(2016) James D. Reimer et al.   JOURNAL OF BIOGEOGRAPHY

Most Low-Abundance “Background” Symbiodinium spp. Are Transitory and Have Minimal Functional Significance for Symbiotic Corals

(2016) Moo Joon Lee et al.   MICROBIAL ECOLOGY

On the difficulty of recognizing distinctSymbiodiniumspecies in mixed communities of algal symbionts

(2016) Herman H. Wirshing et al.   MOLECULAR ECOLOGY

Microsatellite allele sizes alone are insufficient to delineate species boundaries inSymbiodinium

(2016) E. J. Howells et al.   MOLECULAR ECOLOGY

Symbiodinium population genetics: testing for species boundaries and analysing samples with mixed genotypes

(2016) Drew C. Wham et al.   MOLECULAR ECOLOGY

Microbial Dysbiosis: Rethinking Disease in Marine Ecosystems

(2016) Suhelen Egan et al.   Frontiers in Microbiology

The Coral Trait Database, a curated database of trait information for coral species from the global oceans

(2016) Joshua S. Madin et al.   Scientific Data

Maternal effects andSymbiodiniumcommunity composition drive differential patterns in juvenile survival in the coralAcropora tenuis

(2016) Kate M. Quigley et al.   Royal Society Open Science

Recovery from bleaching is mediated by threshold densities of background thermo-tolerant symbiont types in a reef-building coral

(2016) Line K. Bay et al.   Royal Society Open Science

Genomes of coral dinoflagellate symbionts highlight evolutionary adaptations conducive to a symbiotic lifestyle

(2016) M. Aranda et al.   Scientific Reports

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Patterns of Symbiodinium spp. associations within the family Aiptasiidae, a monophyletic lineage of symbiotic of sea anemones (Cnidaria, Actiniaria)

(2015) Alejandro Grajales et al.   CORAL REEFS

Horizontal transmission of Symbiodinium cells between adult and juvenile corals is aided by benthic sediment

(2015) Matthew R. Nitschke et al.   CORAL REEFS

Genetic diversity of free-living Symbiodinium in the Caribbean: the importance of habitats and seasons

(2015) Camila Granados-Cifuentes et al.   CORAL REEFS

Proteome sequencing goes deep

(2015) Alicia L Richards et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Symbiodinium tridacnidorumsp. nov., a dinoflagellate common to Indo-Pacific giant clams, and a revised morphological description ofSymbiodinium microadriaticumFreudenthal, emended Trench & Blank

(2015) Sung Yeon Lee et al.   EUROPEAN JOURNAL OF PHYCOLOGY

Symbiodinium necroappetenssp. nov. (Dinophyceae): an opportunist ‘zooxanthella’ found in bleached and diseased tissues of Caribbean reef corals

(2015) Todd C. LaJeunesse et al.   EUROPEAN JOURNAL OF PHYCOLOGY

The symbiotic life of Symbiodinium in the open ocean within a new species of calcifying ciliate (Tiarina sp.)

(2015) Solenn Mordret et al.   ISME Journal

Preconditioning in the reef-building coral Pocillopora damicornis and the potential for trans-generational acclimatization in coral larvae under future climate change conditions

(2015) H. M. Putnam et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

New species of Clade BSymbiodinium(Dinophyceae) from the greater Caribbean belong to different functional guilds:S. aenigmaticumsp. nov.,S. antillogorgiumsp. nov.,S. endomadracissp. nov., andS. pseudominutumsp. nov.

(2015) John Everett Parkinson et al.   JOURNAL OF PHYCOLOGY

Niche acclimatization in Red Sea corals is dependent on flexibility of host-symbiont association

(2015) M Ziegler et al.   MARINE ECOLOGY PROGRESS SERIES

Functional diversity of photobiological traits within the genusSymbiodiniumappears to be governed by the interaction of cell size with cladal designation

(2015) David J. Suggett et al.   NEW PHYTOLOGIST

Coral symbiotic algae calcifyex hospitein partnership with bacteria

(2015) Jörg C. Frommlet et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microbial invasion of the Caribbean by an Indo-Pacific coral zooxanthella

(2015) D. Tye Pettay et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Symbiodinium kawagutii genome illuminates dinoflagellate gene expression and coral symbiosis

(2015) S. Lin et al.   SCIENCE

MIG-seq: an effective PCR-based method for genome-wide single-nucleotide polymorphism genotyping using the next-generation sequencing platform

(2015) Yoshihisa Suyama et al.   Scientific Reports

Symbiodinium thermophilum sp. nov., a thermotolerant symbiotic alga prevalent in corals of the world's hottest sea, the Persian/Arabian Gulf

(2015) B. C. C. Hume et al.   Scientific Reports

Niche acclimatization in Red Sea corals is dependent on flexibility of host-symbiont association

(2015) M Ziegler et al.   MARINE ECOLOGY PROGRESS SERIES

Variability of Symbiodinium Communities in Waters, Sediments, and Corals of Thermally Distinct Reef Pools in American Samoa

(2015) Ross Cunning et al.   PLoS One

DNA-based species delimitation in algae

(2014) Frederik Leliaert et al.   EUROPEAN JOURNAL OF PHYCOLOGY

Massive Gene Transfer and Extensive RNA Editing of a Symbiotic Dinoflagellate Plastid Genome

(2014) Sutada Mungpakdee et al.   Genome Biology and Evolution

Lateral light transfer ensures efficient resource distribution in symbiont-bearing corals

(2014) D. Wangpraseurt et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Lineage-Specific Transcriptional Profiles of Symbiodinium spp. Unaltered by Heat Stress in a Coral Host

(2014) Daniel J. Barshis et al.   MOLECULAR BIOLOGY AND EVOLUTION

AssessingSymbiodiniumdiversity in scleractinian corals via next-generation sequencing-based genotyping of the ITS2 rDNA region

(2014) Chatchanit Arif et al.   MOLECULAR ECOLOGY

Cryptic diversity hides host and habitat specialization in a gorgonian-algal symbiosis

(2014) Carlos Prada et al.   MOLECULAR ECOLOGY

New insights into the dynamics between reef corals and their associated dinoflagellate endosymbionts from population genetic studies

(2014) Iliana B. Baums et al.   MOLECULAR ECOLOGY

Ecologically differentiated stress-tolerant endosymbionts in the dinoflagellate genusSymbiodinium(Dinophyceae) Clade D are different species

(2014) Todd C. LaJeunesse et al.   PHYCOLOGIA

Deep-Sequencing Method for Quantifying Background Abundances of Symbiodinium Types: Exploring the Rare Symbiodinium Biosphere in Reef-Building Corals

(2014) Kate M. Quigley et al.   PLoS One

Symbiodinium Photosynthesis in Caribbean Octocorals

(2014) Blake D. Ramsby et al.   PLoS One

Challenges in analysis and interpretation of microsatellite data for population genetic studies

(2014) Alexander I. Putman et al.   Ecology and Evolution

The extended phenotypes of marine symbioses: ecological and evolutionary consequences of intraspecific genetic diversity in coral–algal associations

(2014) John E. Parkinson et al.   Frontiers in Microbiology

Quantifying crypticSymbiodiniumdiversity withinOrbicella faveolataandOrbicella franksiat the Flower Garden Banks, Gulf of Mexico

(2014) Elizabeth A. Green et al.   PeerJ

Multi-gene analysis ofSymbiodiniumdinoflagellates: a perspective on rarity, symbiosis, and evolution

(2014) Xavier Pochon et al.   PeerJ

Flexible associations between Pocillopora corals and Symbiodinium limit utility of symbiosis ecology in defining species

(2013) R. Cunning et al.   CORAL REEFS

FISH-Flow: a quantitative molecular approach for describing mixed clade communities of Symbiodinium

(2013) S. E. McIlroy et al.   CORAL REEFS

Screening by coral green fluorescent protein (GFP)-like chromoproteins supports a role in photoprotection of zooxanthellae

(2013) E. G. Smith et al.   CORAL REEFS

Draft Assembly of the Symbiodinium minutum Nuclear Genome Reveals Dinoflagellate Gene Structure

(2013) Eiichi Shoguchi et al.   CURRENT BIOLOGY

Historical thermal regimes define limits to coral acclimatization

(2013) Emily J. Howells et al.   ECOLOGY

HOST-SPECIALIST LINEAGES DOMINATE THE ADAPTIVE RADIATION OF REEF CORAL ENDOSYMBIONTS

(2013) Daniel J. Thornhill et al.   EVOLUTION

Genetics and Morphology Characterize the DinoflagellateSymbiodinium voratum, n. sp., (Dinophyceae) as the Sole Representative ofSymbiodiniumClade E

(2013) Hae Jin Jeong et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

The symbiosis between the gastropod Strombus gigas and the dinoflagellate Symbiodinium: An ontogenic journey from mutualism to parasitism

(2013) Anastazia T. Banaszak et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Isolation of clonal axenic strains of the symbiotic dinoflagellateSymbiodiniumand their growth and host specificity1

(2013) Tingting Xiang et al.   JOURNAL OF PHYCOLOGY

Symbiodiniumdiversity withinAcropora muricataand the surrounding environment

(2013) Michael J. Sweet   Marine Ecology-An Evolutionary Perspective

Spatial and temporal genetic structure ofSymbiodiniumpopulations within a common reef-building coral on the Great Barrier Reef

(2013) Emily J. Howells et al.   MOLECULAR ECOLOGY

Vectored dispersal ofSymbiodiniumby larvae of a Caribbean gorgonian octocoral

(2013) Herman H. Wirshing et al.   MOLECULAR ECOLOGY

Modulation of Light-Enhancement to Symbiotic Algae by Light-Scattering in Corals and Evolutionary Trends in Bleaching

(2013) Luisa A. Marcelino et al.   PLoS One

Microsatellite loci for Symbiodinium goreaui and other Clade C Symbiodinium

(2013) Drew C. Wham et al.   Conservation Genetics Resources

Protein evolution in two co-occurring types of Symbiodinium: an exploration into the genetic basis of thermal tolerance in Symbiodinium clade D

(2012) Jason T Ladner et al.   BMC EVOLUTIONARY BIOLOGY

A simple temperature-based model predicts the upper latitudinal limit of the temperate coral Astrangia poculata

(2012) J. L. Dimond et al.   CORAL REEFS

The promiscuous larvae: flexibility in the establishment of symbiosis in corals

(2012) V. R. Cumbo et al.   CORAL REEFS

Thicker host tissues moderate light stress in a cnidarian endosymbiont

(2012) J. L. Dimond et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Cultivating endosymbionts — Host environmental mimics support the survival of Symbiodinium C15 ex hospite

(2012) Thomas Krueger et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

A genetics-based description ofSymbiodinium minutumsp. nov. andS. psygmophilumsp. nov. (Dinophyceae), two dinoflagellates symbiotic with cnidaria

(2012) Todd C. Lajeunesse et al.   JOURNAL OF PHYCOLOGY

Erratum: Differential effects of ocean acidification on growth and photosynthesis among phylotypes ofSymbiodinium(Dinophyceae)

(2012) Patrick Brading et al.   LIMNOLOGY AND OCEANOGRAPHY

Cell Biology of Cnidarian-Dinoflagellate Symbiosis

(2012) S. K. Davy et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Epigenetics and the environment: emerging patterns and implications

(2012) Robert Feil et al.   NATURE REVIEWS GENETICS

Genetic identity of free-livingSymbiodiniumobtained over a broad latitudinal range in the Japanese coast

(2012) Hiroshi Yamashita et al.   PHYCOLOGICAL RESEARCH

Identifying and Characterizing Alternative Molecular Markers for the Symbiotic and Free-Living Dinoflagellate Genus Symbiodinium

(2012) Xavier Pochon et al.   PLoS One

Symbiodinium Transcriptomes: Genome Insights into the Dinoflagellate Symbionts of Reef-Building Corals

(2012) Till Bayer et al.   PLoS One

Sampling for Microsatellite-Based Population Genetic Studies: 25 to 30 Individuals per Population Is Enough to Accurately Estimate Allele Frequencies

(2012) Marie L. Hale et al.   PLoS One

DNA methylation dynamics, metabolic fluxes, gene splicing, and alternative phenotypes in honey bees

(2012) S. Foret et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Specificity is rarely absolute in coral-algal symbiosis: implications for coral response to climate change

(2012) R. N. Silverstein et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Symbiodinium Clade C Dominates Zooxanthellate Corals (Scleractinia) in the Temperate Region of Japan

(2012) Yi-Ting Lien et al.   ZOOLOGICAL SCIENCE

Excess algal symbionts increase the susceptibility of reef corals to bleaching

(2012) Ross Cunning et al.   Nature Climate Change

Light gradients and optical microniches in coral tissues

(2012) Daniel Wangpraseurt et al.   Frontiers in Microbiology

Novel polymorphic microsatellite markers for population genetics of the endangered Caribbean star coral, Montastraea faveolata

(2012) Sarah W. Davies et al.   Marine Biodiversity

Dispersal of Symbiodinium by the stoplight parrotfish Sparisoma viride

(2011) C. Castro-Sanguino et al.   Biology Letters

Genetic diversity of free-living Symbiodinium in surface water and sediment of Hawai‘i and Florida

(2011) M. Takabayashi et al.   CORAL REEFS

Range-wide population genetic structure of Symbiodinium associated with the Caribbean Sea fan coral, Gorgonia ventalina

(2011) JASON P. ANDRAS et al.   MOLECULAR ECOLOGY

Symbiodinium diversity among host clionaid sponges from Caribbean and Pacific reefs: Evidence of heteroplasmy and putative host-specific symbiont lineages

(2011) Malcolm Hill et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Improved Resolution of Reef-Coral Endosymbiont (Symbiodinium) Species Diversity, Ecology, and Evolution through psbA Non-Coding Region Genotyping

(2011) Todd C. LaJeunesse et al.   PLoS One

The biological reality of host sanctions and partner fidelity

(2011) E. T. Kiers et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genomic understanding of dinoflagellates

(2011) Senjie Lin   RESEARCH IN MICROBIOLOGY

Race, Ethnicity, and NIH Research Awards

(2011) D. K. Ginther et al.   SCIENCE

Microsatellite loci for the host-generalist “zooxanthella” Symbiodinium trenchi and other Clade D Symbiodinium

(2011) Drew C. Wham et al.   Conservation Genetics Resources

Coral thermal tolerance shaped by local adaptation of photosymbionts

(2011) E. J. Howells et al.   Nature Climate Change

Presence of Symbiodinium spp. in macroalgal microhabitats from the southern Great Barrier Reef

(2010) D. E. Venera-Ponton et al.   CORAL REEFS

Host population genetic structure and zooxanthellae diversity of two reef-building coral species along the Florida Reef Tract and wider Caribbean

(2010) I. B. Baums et al.   CORAL REEFS

Long-standing environmental conditions, geographic isolation and host-symbiont specificity influence the relative ecological dominance and genetic diversification of coral endosymbionts in the genusSymbiodinium

(2010) Todd C. LaJeunesse et al.   JOURNAL OF BIOGEOGRAPHY

COMPARISON OF ENDOSYMBIOTIC AND FREE-LIVING SYMBIODINIUM (DINOPHYCEAE) DIVERSITY IN A HAWAIIAN REEF ENVIRONMENT1

(2010) Xavier Pochon et al.   JOURNAL OF PHYCOLOGY

Diversity in populations of free-living Symbiodinium from a Caribbean and Pacific reef

(2010) Mackenzie M. Manning et al.   LIMNOLOGY AND OCEANOGRAPHY

Novel algal symbiont (Symbiodinium spp.) diversity in reef corals of Western Australia

(2010) RN Silverstein et al.   MARINE ECOLOGY PROGRESS SERIES

The Relative Significance of Host–Habitat, Depth, and Geography on the Ecology, Endemism, and Speciation of Coral Endosymbionts in the Genus Symbiodinium

(2010) J. Christine Finney et al.   MICROBIAL ECOLOGY

Environmental Symbiont Acquisition May Not Be the Solution to Warming Seas for Reef-Building Corals

(2010) Mary Alice Coffroth et al.   PLoS One

Host-symbiont recombination versus natural selection in the response of coral-dinoflagellate symbioses to environmental disturbance

(2010) T. C. LaJeunesse et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Coral-virus interactions: A double-edged sword?

(2010) Madeleine J. H. van Oppen et al.   SYMBIOSIS

Microsatellite loci for Symbiodinium A3 (S. fitti) a common algal symbiont among Caribbean Acropora (stony corals) and Indo-Pacific giant clams (Tridacna)

(2010) Jorge H. Pinzón et al.   Conservation Genetics Resources

Preliminary analyses of cultured Symbiodinium isolated from sand in the oceanic Ogasawara Islands, Japan

(2010) James Davis Reimer et al.   Marine Biodiversity

Fast, cost-effective development of species-specific microsatellite markers by genomic sequencing

(2009) Jawad Abdelkrim et al.   BIOTECHNIQUES

Understanding diversity in coral-algal symbiosis: a cluster-based approach to interpreting fine-scale genetic variation in the genus Symbiodinium

(2009) A. M. S. Correa et al.   CORAL REEFS

Symbiodinium associations with diseased and healthy scleractinian corals

(2009) A. M. S. Correa et al.   CORAL REEFS

What is microbial community ecology?

(2009) Allan Konopka   ISME Journal

Development of clade-specific Symbiodinium primers for quantitative PCR (qPCR) and their application to detecting clade D symbionts in Caribbean corals

(2009) Adrienne M. S. Correa et al.   MARINE BIOLOGY

Population structure of Symbiodinium sp. associated with the common sea fan, Gorgonia ventalina, in the Florida Keys across distance, depth, and time

(2009) Nathan L. Kirk et al.   MARINE BIOLOGY

Cohesive molecular genetic data delineate species diversity in the dinoflagellate genusSymbiodinium

(2009) E. M. SAMPAYO et al.   MOLECULAR ECOLOGY

Microsatellite loci for assessing genetic diversity, dispersal and clonality of coral symbionts in ‘stress-tolerant’ clade DSymbiodinium

(2009) DANIEL T. PETTAY et al.   Molecular Ecology Resources

Isolation and characterization of microsatellite loci inSymbiodiniumB1/B184, the dinoflagellate symbiont of the Caribbean sea fan coral,Gorgonia ventalina

(2009) JASON P. ANDRAS et al.   Molecular Ecology Resources

Permanent Genetic Resources added to Molecular Ecology Resources Database 1 August 2009–30 September 2009

(2009) et al.   Molecular Ecology Resources

Reef Endemism, Host Specificity and Temporal Stability in Populations of Symbiotic Dinoflagellates from Two Ecologically Dominant Caribbean Corals

(2009) Daniel J. Thornhill et al.   PLoS One

Isolation, characterisation and cross amplification of thirteen microsatellite loci for coral endo-symbiotic dinoflagellates (Symbiodinium clade C)

(2009) Line Kolind Bay et al.   Conservation Genetics Resources

Do introduced endosymbiotic dinoflagellates ‘take’ to new hosts?

(2008) Todd C. LaJeunesse et al.   BIOLOGICAL INVASIONS

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

Evolutionary analysis of orthologous cDNA sequences from cultured and symbiotic dinoflagellate symbionts of reef-building corals (Dinophyceae: Symbiodinium)

(2008) Christian R. Voolstra et al.   Comparative Biochemistry and Physiology D-Genomics & Proteomics

High genetic differentiation and cross-shelf patterns of genetic diversity among Great Barrier Reef populations of Symbiodinium

(2008) E. J. Howells et al.   CORAL REEFS

Photobiology of Symbiodinium revisited: bio-physical and bio-optical signatures

(2008) S. J. Hennige et al.   CORAL REEFS

Phylogenetic analyses of potentially free-living Symbiodinium spp. isolated from coral reef sand in Okinawa, Japan

(2008) Mamiko Hirose et al.   MARINE BIOLOGY

Mechanisms of habitat segregation between corallimorpharians: photosynthetic parameters and Symbiodinium types

(2008) B Kuguru et al.   MARINE ECOLOGY PROGRESS SERIES

Exposure to sediment enhances primary acquisition of Symbiodinium by asymbiotic coral larvae

(2008) LM Adams et al.   MARINE ECOLOGY PROGRESS SERIES

Interpretation of fast repetition rate (FRR) fluorescence: signatures of phytoplankton community structure versus physiological state

(2008) DJ Suggett et al.   MARINE ECOLOGY PROGRESS SERIES

DNA methylation landscapes: provocative insights from epigenomics

(2008) Miho M. Suzuki et al.   NATURE REVIEWS GENETICS

Macroalgal-Associated Dinoflagellates Belonging to the Genus Symbiodinium in Caribbean Reefs

(2008) Isabel Porto et al.   PLoS One

Bleaching susceptibility and mortality of corals are determined by fine-scale differences in symbiont type

(2008) E. M. Sampayo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Functional diversity in coral-dinoflagellate symbiosis

(2008) M. Stat et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Species-specific interactions between algal endosymbionts and coral hosts define their bleaching response to heat and light stress

(2008) D. Abrego et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

A community change in the algal endosymbionts of a scleractinian coral following a natural bleaching event: field evidence of acclimatization

(2008) A.M Jones et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Double-blind review favours increased representation of female authors

(2007) A BUDDEN et al.   TRENDS IN ECOLOGY & EVOLUTION