Deep-Sequencing Method for Quantifying Background Abundances of Symbiodinium Types: Exploring the Rare Symbiodinium Biosphere in Reef-Building Corals

Populations of Symbiodinium muscatinei Show Strong Biogeographic Structuring in the Intertidal Anemone Anthopleura elegantissima

(2016) Jon G. Sanders et al.   BIOLOGICAL BULLETIN

Spatial and temporal genetic structure ofSymbiodiniumpopulations within a common reef-building coral on the Great Barrier Reef

(2013) Emily J. Howells et al.   MOLECULAR ECOLOGY

Evidence for a host role in thermotolerance divergence between populations of the mustard hill coral (Porites astreoides ) from different reef environments

(2013) C. D. Kenkel et al.   MOLECULAR ECOLOGY

Compensatory Base Changes in ITS2 Secondary Structures Correlate with the Biological Species Concept Despite Intragenomic Variability in ITS2 Sequences – A Proof of Concept

(2013) Matthias Wolf et al.   PLoS One

454 Pyrosequencing to Describe Microbial Eukaryotic Community Composition, Diversity and Relative Abundance: A Test for Marine Haptophytes

(2013) Elianne Egge et al.   PLoS One

SymbioGBR: a web-based database of Symbiodinium associated with cnidarian hosts on the Great Barrier Reef

(2013) Linda Tonk et al.   BMC ECOLOGY

Cell Biology of Cnidarian-Dinoflagellate Symbiosis

(2012) S. K. Davy et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Identifying and Characterizing Alternative Molecular Markers for the Symbiotic and Free-Living Dinoflagellate Genus Symbiodinium

(2012) Xavier Pochon et al.   PLoS One

Extensive Pyrosequencing Reveals Frequent Intra-Genomic Variations of Internal Transcribed Spacer Regions of Nuclear Ribosomal DNA

(2012) Jingyuan Song et al.   PLoS One

Testing the Limits of 454 Pyrotag Sequencing: Reproducibility, Quantitative Assessment and Comparison to T-RFLP Fingerprinting of Aquifer Microbes

(2012) Giovanni Pilloni et al.   PLoS One

Endosymbiotic flexibility associates with environmental sensitivity in scleractinian corals

(2012) H. M. Putnam et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Specificity is rarely absolute in coral-algal symbiosis: implications for coral response to climate change

(2012) R. N. Silverstein et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Sequencing our way towards understanding global eukaryotic biodiversity

(2012) Holly M. Bik et al.   TRENDS IN ECOLOGY & EVOLUTION

Incorporating 16S Gene Copy Number Information Improves Estimates of Microbial Diversity and Abundance

(2012) Steven W. Kembel et al.   PLoS Computational Biology

The Rare Bacterial Biosphere

(2011) Carlos Pedrós-Alió   Annual Review of Marine Science

Assessing the complex sponge microbiota: core, variable and species-specific bacterial communities in marine sponges

(2011) Susanne Schmitt et al.   ISME Journal

Genomic and proteomic analyses of the coral pathogen Vibrio coralliilyticus reveal a diverse virulence repertoire

(2011) Eidy de O Santos et al.   ISME Journal

The nature and taxonomic composition of coral symbiomes as drivers of performance limits in scleractinian corals

(2011) Ruth D. Gates et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Recent progress in Symbiodinium transcriptomics

(2011) William Leggat et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy

(2011) K. D. Pruitt et al.   NUCLEIC ACIDS RESEARCH

Variation in Symbiodinium ITS2 Sequence Assemblages among Coral Colonies

(2011) Michael Stat et al.   PLoS One

Improved Resolution of Reef-Coral Endosymbiont (Symbiodinium) Species Diversity, Ecology, and Evolution through psbA Non-Coding Region Genotyping

(2011) Todd C. LaJeunesse et al.   PLoS One

Coral thermal tolerance shaped by local adaptation of photosymbionts

(2011) E. J. Howells et al.   Nature Climate Change

pegas: an R package for population genetics with an integrated-modular approach

(2010) E. Paradis   BIOINFORMATICS

Ribosomal tag pyrosequencing of DNA and RNA from benthic coral reef microbiota: community spatial structure, rare members and nitrogen-cycling guilds

(2010) Eric Gaidos et al.   ENVIRONMENTAL MICROBIOLOGY

Ocean acidification and warming will lower coral reef resilience

(2010) KENNETH R. N. ANTHONY et al.   GLOBAL CHANGE BIOLOGY

Specificity and stability in high latitude eastern Pacific coral-algal symbioses

(2010) T. C. LaJeunesse et al.   LIMNOLOGY AND OCEANOGRAPHY

Quantifying microbial communities with 454 pyrosequencing: does read abundance count?

(2010) ANTHONY S. AMEND et al.   MOLECULAR ECOLOGY

Potential Costs of Acclimatization to a Warmer Climate: Growth of a Reef Coral with Heat Tolerant vs. Sensitive Symbiont Types

(2010) Alison Jones et al.   PLoS One

Juvenile corals can acquire more carbon from high-performance algal symbionts

(2009) N. E. Cantin et al.   CORAL REEFS

SYMBIODINIUM(DINOPHYTA) DIVERSITY AND STABILITY IN AQUARIUM CORALS

(2009) Robin T. Smith et al.   JOURNAL OF PHYCOLOGY

Development of clade-specific Symbiodinium primers for quantitative PCR (qPCR) and their application to detecting clade D symbionts in Caribbean corals

(2009) Adrienne M. S. Correa et al.   MARINE BIOLOGY

Specificity in communities of Symbiodinium in corals from Johnston Atoll

(2009) M Stat et al.   MARINE ECOLOGY PROGRESS SERIES

Quantification of algal endosymbionts (Symbiodinium) in coral tissue using real-time PCR

(2009) J. C. MIEOG et al.   Molecular Ecology Resources

Sequencing technologies — the next generation

(2009) Michael L. Metzker   NATURE REVIEWS GENETICS

Distinct Gene Number-Genome Size Relationships for Eukaryotes and Non-Eukaryotes: Gene Content Estimation for Dinoflagellate Genomes

(2009) Yubo Hou et al.   PLoS One

Outbreak and persistence of opportunistic symbiotic dinoflagellates during the 2005 Caribbean mass coral 'bleaching' event

(2009) T. C. LaJeunesse et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Isolation, characterisation and cross amplification of thirteen microsatellite loci for coral endo-symbiotic dinoflagellates (Symbiodinium clade C)

(2009) Line Kolind Bay et al.   Conservation Genetics Resources

Distribution and photobiology of Symbiodinium types in different light environments for three colour morphs of the coral Madracis pharensis: is there more to it than total irradiance?

(2008) P. R. Frade et al.   CORAL REEFS

CORRESPONDENCE BETWEEN COLD TOLERANCE AND TEMPERATE BIOGEOGRAPHY IN A WESTERN ATLANTICSYMBIODINIUM(DINOPHYTA) LINEAGE1

(2008) Daniel J. Thornhill et al.   JOURNAL OF PHYCOLOGY

Functional diversity in coral-dinoflagellate symbiosis

(2008) M. Stat et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Enhanced photoprotection pathways in symbiotic dinoflagellates of shallow-water corals and other cnidarians

(2008) J. M. Reynolds et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ocean acidification causes bleaching and productivity loss in coral reef builders

(2008) K. R. N. Anthony et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Species-specific interactions between algal endosymbionts and coral hosts define their bleaching response to heat and light stress

(2008) D. Abrego et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Coral bleaching: the role of the host

(2008) Andrew H. Baird et al.   TRENDS IN ECOLOGY & EVOLUTION