- Home
- Publications
- Publication Search
- Publication Details
Title
Revisiting the rules of life for viruses of microorganisms
Authors
Keywords
-
Journal
NATURE REVIEWS MICROBIOLOGY
Volume -, Issue -, Pages -
Publisher
Springer Science and Business Media LLC
Online
2021-03-24
DOI
10.1038/s41579-021-00530-x
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Phage-specific metabolic reprogramming of virocells
- (2020) Cristina Howard-Varona et al. ISME Journal
- Phage diversity, genomics and phylogeny
- (2020) Moïra B. Dion et al. NATURE REVIEWS MICROBIOLOGY
- High cell densities favor lysogeny: induction of an H20 prophage is repressed by quorum sensing and enhances biofilm formation in Vibrio anguillarum
- (2020) Demeng Tan et al. ISME Journal
- Genetically similar temperate phages form coalitions with their shared host that lead to niche-specific fitness effects
- (2020) Jonelle T. R. Basso et al. ISME Journal
- VIBRANT: automated recovery, annotation and curation of microbial viruses, and evaluation of viral community function from genomic sequences
- (2020) Kristopher Kieft et al. Microbiome
- When to be Temperate: On the Fitness Benefits of Lysis vs. Lysogeny
- (2020) Guanlin Li et al. Virus Evolution
- Adsorption sequencing (AdsorpSeq) as a rapid method to link environmental bacteriophages to hosts
- (2020) Patrick A. de Jonge et al. iScience
- A single-cell polony method reveals low levels of infected Prochlorococcus in oligotrophic waters despite high cyanophage abundances
- (2020) Noor Mruwat et al. ISME Journal
- Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle
- (2019) Edoardo Pasolli et al. CELL
- Caution in inferring viral strategies from abundance correlations in marine metagenomes
- (2019) Hend Alrasheed et al. Nature Communications
- Host-hijacking and planktonic piracy: how phages command the microbial high seas
- (2019) Joanna Warwick-Dugdale et al. Virology Journal
- The Toxin–Antidote Model of Cytoplasmic Incompatibility: Genetics and Evolutionary Implications
- (2019) John F. Beckmann et al. TRENDS IN GENETICS
- Bacteriophage trigger antiviral immunity and prevent clearance of bacterial infection
- (2019) Johanna M. Sweere et al. SCIENCE
- Cryopreservation of Paramecium bursaria Chlorella Virus-1 during an active infection cycle of its host
- (2019) Samantha R. Coy et al. PLoS One
- Novel insights from uncultivated genomes of the global human gut microbiome
- (2019) Stephen Nayfach et al. NATURE
- A new genomic blueprint of the human gut microbiota
- (2019) Alexandre Almeida et al. NATURE
- Active and diverse viruses persist in the deep sub-seafloor sediments over thousands of years
- (2019) Lanlan Cai et al. ISME Journal
- Marine DNA Viral Macro- and Microdiversity from Pole to Pole
- (2019) Ann C. Gregory et al. CELL
- Widespread Utilization of Peptide Communication in Phages Infecting Soil and Pathogenic Bacteria
- (2019) Avigail Stokar-Avihail et al. Cell Host & Microbe
- Filamentous phages: masters of a microbial sharing economy
- (2019) Iain D Hay et al. EMBO REPORTS
- Taxonomic assignment of uncultivated prokaryotic virus genomes is enabled by gene-sharing networks
- (2019) Ho Bin Jang et al. NATURE BIOTECHNOLOGY
- A Viral Ecogenomics Framework To Uncover the Secrets of Nature’s “Microbe Whisperers”
- (2019) Simon Roux mSystems
- Bacteriophages benefit from generalized transduction
- (2019) Alfred Fillol-Salom et al. PLoS Pathogens
- Single Cell Genomics-Based Analysis of Gene Content and Expression of Prophages in a Diffuse-Flow Deep-Sea Hydrothermal System
- (2019) Jessica M. Labonté et al. Frontiers in Microbiology
- Resistance in marine cyanobacteria differs against specialist and generalist cyanophages
- (2019) Sophia Zborowsky et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Viral Communities in the Global Deep Ocean Conveyor Belt Assessed by Targeted Viromics
- (2019) Daniele De Corte et al. Frontiers in Microbiology
- Defining the human gut host–phage network through single-cell viral tagging
- (2019) Mária Džunková et al. Nature Microbiology
- A Phage Protein Aids Bacterial Symbionts in Eukaryote Immune Evasion
- (2019) Martin T. Jahn et al. Cell Host & Microbe
- Metabolic and biogeochemical consequences of viral infection in aquatic ecosystems
- (2019) Amy E. Zimmerman et al. NATURE REVIEWS MICROBIOLOGY
- Contemporary Phage Biology: From Classic Models to New Insights
- (2018) Gal Ofir et al. CELL
- Anti-CRISPR Phages Cooperate to Overcome CRISPR-Cas Immunity
- (2018) Mariann Landsberger et al. CELL
- Bacteria Facilitate Enteric Virus Co-infection of Mammalian Cells and Promote Genetic Recombination
- (2018) Andrea K. Erickson et al. Cell Host & Microbe
- Multiple mechanisms drive phage infection efficiency in nearly identical hosts
- (2018) Cristina Howard-Varona et al. ISME Journal
- A virus or more in (nearly) every cell: ubiquitous networks of virus–host interactions in extreme environments
- (2018) Jacob H. Munson-McGee et al. ISME Journal
- One prophage WO gene rescues cytoplasmic incompatibility inDrosophila melanogaster
- (2018) J. Dylan Shropshire et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Metavirome Sequencing of the Termite Gut Reveals the Presence of an Unexplored Bacteriophage Community
- (2018) Chinmay V. Tikhe et al. Frontiers in Microbiology
- Beyond Bacteria: Bacteriophage-Eukaryotic Host Interactions Reveal Emerging Paradigms of Health and Disease
- (2018) Anushila Chatterjee et al. Frontiers in Microbiology
- The reconstruction of 2,631 draft metagenome-assembled genomes from the global oceans
- (2018) Benjamin J. Tully et al. Scientific Data
- Phage puppet masters of the marine microbial realm
- (2018) Mya Breitbart et al. Nature Microbiology
- Host-linked soil viral ecology along a permafrost thaw gradient
- (2018) Joanne B. Emerson et al. Nature Microbiology
- Phage–host population dynamics promotes prophage acquisition in bacteria with innate immunity
- (2018) Maroš Pleška et al. Nature Ecology & Evolution
- Diversity of active viral infections within the Sphagnum microbiome
- (2018) Joshua M.A. Stough et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Genome-centric view of carbon processing in thawing permafrost
- (2018) Ben J. Woodcroft et al. NATURE
- RNA Phage Biology in a Metagenomic Era
- (2018) Julie Callanan et al. Viruses-Basel
- A Host-Produced Quorum-Sensing Autoinducer Controls a Phage Lysis-Lysogeny Decision
- (2018) Justin E. Silpe et al. CELL
- A bacterium’s enemy isn’t your friend
- (2018) Michael S. Gilmore et al. NATURE
- Methicillin-resistant Staphylococcus aureus alters cell wall glycosylation to evade immunity
- (2018) David Gerlach et al. NATURE
- Minimum Information about an Uncultivated Virus Genome (MIUViG)
- (2018) Simon Roux et al. NATURE BIOTECHNOLOGY
- Entities inside one another - a matryoshka doll in biology?
- (2018) Tanja Woyke et al. Environmental Microbiology Reports
- Exploratory analysis of Symbiodinium transcriptomes reveals potential latent infection by large dsDNA viruses
- (2017) Scott A. Lawrence et al. ENVIRONMENTAL MICROBIOLOGY
- Lysogeny in nature: mechanisms, impact and ecology of temperate phages
- (2017) Cristina Howard-Varona et al. ISME Journal
- Temperate phages as self-replicating weapons in bacterial competition
- (2017) Xiang-Yi Li et al. Journal of the Royal Society Interface
- Lysis, lysogeny and virus–microbe ratios
- (2017) Joshua S. Weitz et al. NATURE
- Knowles &Rohwer reply
- (2017) Ben Knowles et al. NATURE
- Communication between viruses guides lysis–lysogeny decisions
- (2017) Zohar Erez et al. NATURE
- Virus–host interactions and their roles in coral reef health and disease
- (2017) Rebecca Vega Thurber et al. NATURE REVIEWS MICROBIOLOGY
- Viral ecology comes of age
- (2017) Matthew B. Sullivan et al. Environmental Microbiology Reports
- Marine viruses discovered via metagenomics shed light on viral strategies throughout the oceans
- (2017) Felipe H. Coutinho et al. Nature Communications
- Cell fate decisions emerge as phages cooperate or compete inside their host
- (2017) Jimmy T. Trinh et al. Nature Communications
- Intriguing Interaction of Bacteriophage-Host Association: An Understanding in the Era of Omics
- (2017) Krupa M. Parmar et al. Frontiers in Microbiology
- Quantification of diverse virus populations in the environment using the polony method
- (2017) Nava Baran et al. Nature Microbiology
- Scaffolding bacterial genomes and probing host-virus interactions in gut microbiome by proximity ligation (chromosome capture) assay
- (2017) Martial Marbouty et al. Science Advances
- A novel inducible prophage from the mycosphere inhabitant Paraburkholderia terrae BS437
- (2017) Akbar Adjie Pratama et al. Scientific Reports
- Genomic differentiation among wild cyanophages despite widespread horizontal gene transfer
- (2016) Ann C. Gregory et al. BMC GENOMICS
- Large-scale maps of variable infection efficiencies in aquatic Bacteroidetes phage-host model systems
- (2016) Karin Holmfeldt et al. ENVIRONMENTAL MICROBIOLOGY
- Regulation of infection efficiency in a globally abundant marine Bacteriodetes virus
- (2016) Cristina Howard-Varona et al. ISME Journal
- Temperate phages enhance pathogen fitness in chronic lung infection
- (2016) Emily V Davies et al. ISME Journal
- iVirus: facilitating new insights in viral ecology with software and community data sets imbedded in a cyberinfrastructure
- (2016) Benjamin Bolduc et al. ISME Journal
- Evidence for a role of viruses in the thermal sensitivity of coral photosymbionts
- (2016) Rachel Ashley Levin et al. ISME Journal
- Evolutionary Ecology of Prokaryotic Immune Mechanisms
- (2016) Stineke van Houte et al. MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
- Lytic to temperate switching of viral communities
- (2016) B. Knowles et al. NATURE
- Uncovering Earth’s virome
- (2016) David Paez-Espino et al. NATURE
- Forecasting Epidemiological and Evolutionary Dynamics of Infectious Diseases
- (2016) Sylvain Gandon et al. TRENDS IN ECOLOGY & EVOLUTION
- The Significance of Mutualistic Phages for Bacterial Ecology and Evolution
- (2016) Nancy Obeng et al. TRENDS IN MICROBIOLOGY
- Virocell Metabolism: Metabolic Innovations During Host–Virus Interactions in the Ocean
- (2016) Shilo Rosenwasser et al. TRENDS IN MICROBIOLOGY
- Linking Virus Genomes with Host Taxonomy
- (2016) Tomoko Mihara et al. Viruses-Basel
- Variability in progeny production and virulence of cyanophages determined at the single-cell level
- (2016) Shay Kirzner et al. Environmental Microbiology Reports
- Eukaryotic association module in phage WO genomes from Wolbachia
- (2016) Sarah R. Bordenstein et al. Nature Communications
- Viral Outbreak in Corals Associated with an In Situ Bleaching Event: Atypical Herpes-Like Viruses and a New Megavirus Infecting Symbiodinium
- (2016) Adrienne M. S. Correa et al. Frontiers in Microbiology
- HoloVir: A Workflow for Investigating the Diversity and Function of Viruses in Invertebrate Holobionts
- (2016) Patrick W. Laffy et al. Frontiers in Microbiology
- More Is Better: Selecting for Broad Host Range Bacteriophages
- (2016) Alexa Ross et al. Frontiers in Microbiology
- Viruses as Winners in the Game of Life
- (2016) Ana Georgina Cobián Güemes et al. Annual Review of Virology
- Inferring phage–bacteria infection networks from time-series data
- (2016) Luis F. Jover et al. Royal Society Open Science
- Variably lytic infection dynamics of largeBacteroidetespodovirus phi38:1 against twoCellulophaga balticahost strains
- (2015) Vinh T. Dang et al. ENVIRONMENTAL MICROBIOLOGY
- Single-cell genomics-based analysis of virus–host interactions in marine surface bacterioplankton
- (2015) Jessica M Labonté et al. ISME Journal
- Massively parallel sequencing of single cells by epicPCR links functional genes with phylogenetic markers
- (2015) Sarah J Spencer et al. ISME Journal
- Seasonal time bombs: dominant temperate viruses affect Southern Ocean microbial dynamics
- (2015) Jennifer R Brum et al. ISME Journal
- A new perspective on lysogeny: prophages as active regulatory switches of bacteria
- (2015) Ron Feiner et al. NATURE REVIEWS MICROBIOLOGY
- Bacteriophage lambda: Early pioneer and still relevant
- (2015) Sherwood R. Casjens et al. VIROLOGY
- From cholera to corals: Viruses as drivers of virulence in a major coral bacterial pathogen
- (2015) Karen D. Weynberg et al. Scientific Reports
- Viral dark matter and virus–host interactions resolved from publicly available microbial genomes
- (2015) Simon Roux et al. eLife
- Metagenomics of plant and fungal viruses reveals an abundance of persistent lifestyles
- (2015) Marilyn J. Roossinck Frontiers in Microbiology
- Quantification of virus-like particles suggests viral infection in corals affected by Porites tissue loss
- (2014) Scott A. Lawrence et al. CORAL REEFS
- Contrasting genomic patterns and infection strategies of two co-existingBacteroidetespodovirus genera
- (2014) Karin Holmfeldt et al. ENVIRONMENTAL MICROBIOLOGY
- Impact of Spontaneous Prophage Induction on the Fitness of Bacterial Populations and Host-Microbe Interactions
- (2014) Arun M. Nanda et al. JOURNAL OF BACTERIOLOGY
- When a virus is not a parasite: the beneficial effects of prophages on bacterial fitness
- (2014) Joseph Bondy-Denomy et al. JOURNAL OF MICROBIOLOGY
- Viral tagging reveals discrete populations in Synechococcus viral genome sequence space
- (2014) Li Deng et al. NATURE
- Unveiling viral–host interactions within the ‘microbial dark matter’
- (2014) Manuel Martínez-García et al. Nature Communications
- Ecology and evolution of viruses infecting uncultivated SUP05 bacteria as revealed by single-cell- and meta-genomics
- (2014) Simon Roux et al. eLife
- Mealybugs nested endosymbiosis: going into the ‘matryoshka’ system in Planococcus citri in depth
- (2013) Sergio López-Madrigal et al. BMC MICROBIOLOGY
- Temperate Bacterial Viruses as Double-Edged Swords in Bacterial Warfare
- (2013) João Alves Gama et al. PLoS One
- Understanding Bacteriophage Specificity in Natural Microbial Communities
- (2013) Britt Koskella et al. Viruses-Basel
- Importance of prophages to evolution and virulence of bacterial pathogens
- (2013) Louis-Charles Fortier et al. Virulence
- Evolution of Virulence in Emerging Epidemics
- (2013) Thomas W. Berngruber et al. PLoS Pathogens
- The virocell concept and environmental microbiology
- (2012) Patrick Forterre ISME Journal
- Multi-scale structure and geographic drivers of cross-infection within marine bacteria and phages
- (2012) Cesar O Flores et al. ISME Journal
- Going viral: next-generation sequencing applied to phage populations in the human gut
- (2012) Alejandro Reyes et al. NATURE REVIEWS MICROBIOLOGY
- A composite bacteriophage alters colonization by an intestinal commensal bacterium
- (2012) B. A. Duerkop et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Phage–bacteria infection networks
- (2012) Joshua S. Weitz et al. TRENDS IN MICROBIOLOGY
- The good viruses: viral mutualistic symbioses
- (2011) Marilyn J. Roossinck NATURE REVIEWS MICROBIOLOGY
- Statistical structure of host-phage interactions
- (2011) C. O. Flores et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- To Lyse or Not to Lyse: Transient-Mediated Stochastic Fate Determination in Cells Infected by Bacteriophages
- (2011) Richard I. Joh et al. PLoS Computational Biology
- Decision Making at a Subcellular Level Determines the Outcome of Bacteriophage Infection
- (2010) Lanying Zeng et al. CELL
- Inhibition of Superinfection and the Evolution of Viral Latency
- (2010) T. W. Berngruber et al. JOURNAL OF VIROLOGY
- Coral-virus interactions: A double-edged sword?
- (2010) Madeleine J. H. van Oppen et al. SYMBIOSIS
- The construction of next-generation matrices for compartmental epidemic models
- (2009) O. Diekmann et al. Journal of the Royal Society Interface
- Metagenomic analysis indicates that stressors induce production of herpes-like viruses in the coral Porites compressa
- (2008) R. L. Vega Thurber et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Determination of cell fate selection during phage lambda infection
- (2008) F. St-Pierre et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Find the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
SearchAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started