Massive Gene Transfer and Extensive RNA Editing of a Symbiotic Dinoflagellate Plastid Genome

Photosystem II Assembly: From Cyanobacteria to Plants

(2013) Jörg Nickelsen et al.   Annual Review of Plant Biology

Draft Assembly of the Symbiodinium minutum Nuclear Genome Reveals Dinoflagellate Gene Structure

(2013) Eiichi Shoguchi et al.   CURRENT BIOLOGY

Massively Convergent Evolution for Ribosomal Protein Gene Content in Plastid and Mitochondrial Genomes

(2013) Uwe-G Maier et al.   Genome Biology and Evolution

Split Photosystem Protein, Linear-Mapping Topology, and Growth of Structural Complexity in the Plastid Genome of Chromera velia

(2013) Jan Janouškovec et al.   MOLECULAR BIOLOGY AND EVOLUTION

RNase J participates in a pentatricopeptide repeat protein-mediated 5′ end maturation of chloroplast mRNAs

(2013) Scott Luro et al.   NUCLEIC ACIDS RESEARCH

MarinegenomicsDB: An Integrated Genome Viewer for Community-Based Annotation of Genomes

(2013) Ryo Koyanagi et al.   ZOOLOGICAL SCIENCE

What makes a chloroplast? Reconstructing the establishment of photosynthetic symbioses

(2012) R. G. Dorrell et al.   JOURNAL OF CELL SCIENCE

A Tertiary Plastid Gains RNA Editing in Its New Host

(2012) Christopher J. Jackson et al.   MOLECULAR BIOLOGY AND EVOLUTION

A-to-I RNA Editing: Effects on Proteins Key to Neural Excitability

(2012) Joshua J.C. Rosenthal et al.   NEURON

Mechanistic Insight into Pentatricopeptide Repeat Proteins as Sequence-Specific RNA-Binding Proteins for Organellar RNAs in Plants

(2012) T. Nakamura et al.   PLANT AND CELL PHYSIOLOGY

Polyuridylylation and processing of transcripts from multiple gene minicircles in chloroplasts of the dinoflagellate Amphidinium carterae

(2012) Adrian C. Barbrook et al.   PLANT MOLECULAR BIOLOGY

Symbiodinium Transcriptomes: Genome Insights into the Dinoflagellate Symbionts of Reef-Building Corals

(2012) Till Bayer et al.   PLoS One

Functional remodeling of RNA processing in replacement chloroplasts by pathways retained from their predecessors

(2012) R. G. Dorrell et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolution of light-harvesting complex proteins from Chl c-containing algae

(2011) Gabriel E Hoffman et al.   BMC EVOLUTIONARY BIOLOGY

Transcriptomic response of the red tide dinoflagellate, Karenia brevis, to nitrogen and phosphorus depletion and addition

(2011) Jeanine S Morey et al.   BMC GENOMICS

Genome-wide characterization of transcriptional start sites in humans by integrative transcriptome analysis

(2011) R. Yamashita et al.   GENOME RESEARCH

Photosystem I: Its biogenesis and function in higher plants

(2011) Mark Aurel Schöttler et al.   JOURNAL OF PLANT PHYSIOLOGY

Mechanism of Plastid Division: From a Bacterium to an Organelle

(2011) S.-y. Miyagishima   PLANT PHYSIOLOGY

Morphology, Ultrastructure and Life Cycle of Vitrella brassicaformis n. sp., n. gen., a Novel Chromerid from the Great Barrier Reef

(2011) Miroslav Oborník et al.   PROTIST

A structural phylogenetic map for chloroplast photosynthesis

(2011) John F. Allen et al.   TRENDS IN PLANT SCIENCE

Dinoflagellate Genome Evolution

(2010) Jennifer H. Wisecaver et al.   Annual Review of Microbiology

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

A long antisense RNA in plant chloroplasts

(2010) J. Georg et al.   NEW PHYTOLOGIST

The endosymbiotic origin, diversification and fate of plastids

(2010) P. J. Keeling   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

A common red algal origin of the apicomplexan, dinoflagellate, and heterokont plastids

(2010) J. Janouskovec et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Substitutional editing of Heterocapsa triquetra chloroplast transcripts and a folding model for its divergent chloroplast 16S rRNA

(2009) Yunkun Dang et al.   GENE

Long Transcripts from Dinoflagellate Chloroplast Minicircles Suggest “Rolling Circle” Transcription

(2009) Yunkun Dang et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The replication of plastid minicircles involves rolling circle intermediates

(2009) Siu Kai Leung et al.   NUCLEIC ACIDS RESEARCH

The Pfam protein families database

(2009) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Cascades of convergent evolution: The corresponding evolutionary histories of euglenozoans and dinoflagellates

(2009) J. Lukes et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Correlation between amino acid residues converted by RNA editing and functional residues in protein three-dimensional structures in plant organelles

(2008) Kei Yura et al.   BMC PLANT BIOLOGY

The remarkable chloroplast genome of dinoflagellates

(2008) C. J. Howe et al.   JOURNAL OF EXPERIMENTAL BOTANY

The SWISS-MODEL Repository and associated resources

(2008) F. Kiefer et al.   NUCLEIC ACIDS RESEARCH

Functional organization of a plant Photosystem I: Evolution of a highly efficient photochemical machine

(2008) Alexey Amunts et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Heat stress causes inhibition of the de novo synthesis of antenna proteins and photobleaching in cultured Symbiodinium

(2008) S. Takahashi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Pentatricopeptide repeat proteins: a socket set for organelle gene expression

(2008) C SCHMITZLINNEWEBER et al.   TRENDS IN PLANT SCIENCE