Multi-omics analysis of thermal stress response in a zooxanthellate cnidarian reveals the importance of associating with thermotolerant symbionts

Thermal Shock Induces Host Proteostasis Disruption and Endoplasmic Reticulum Stress in the Model Symbiotic Cnidarian Aiptasia

(2017) Clinton A. Oakley et al.   JOURNAL OF PROTEOME RESEARCH

Differential analysis of RNA-seq incorporating quantification uncertainty

(2017) Harold Pimentel et al.   NATURE METHODS

BBMerge – Accurate paired shotgun read merging via overlap

(2017) Brian Bushnell et al.   PLoS One

Temperature shapes coral-algal symbiosis in the South China Sea

(2017) Haoya Tong et al.   Scientific Reports

On the Dependency of Cellular Protein Levels on mRNA Abundance

(2016) Yansheng Liu et al.   CELL

Control of the heat stress-induced alternative splicing of a subset of genes by hnRNP K

(2016) Koichi Yamamoto et al.   GENES TO CELLS

Exploring the Symbiodinium rare biosphere provides evidence for symbiont switching in reef-building corals

(2016) Nadine M Boulotte et al.   ISME Journal

Differential dynamics of the mammalian mRNA and protein expression response to misfolding stress

(2016) Z. Cheng et al.   Molecular Systems Biology

Near-optimal probabilistic RNA-seq quantification

(2016) Nicolas L Bray et al.   NATURE BIOTECHNOLOGY

Ancestral genetic diversity associated with the rapid spread of stress-tolerant coral symbionts in response to Holocene climate change

(2016) Benjamin C. C. Hume et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Gene expression profiles during short-term heat stress; branchingvs.massive Scleractinian corals of the Red Sea

(2016) Keren Maor-Landaw et al.   PeerJ

Gene expression plasticity as a mechanism of coral adaptation to a variable environment

(2016) Carly D. Kenkel et al.   Nature Ecology & Evolution

Species Richness on Coral Reefs and the Pursuit of Convergent Global Estimates

(2015) Rebecca Fisher et al.   CURRENT BIOLOGY

Niche acclimatization in Red Sea corals is dependent on flexibility of host-symbiont association

(2015) M Ziegler et al.   MARINE ECOLOGY PROGRESS SERIES

Proteomics Links the Redox State to Calcium Signaling During Bleaching of the Scleractinian CoralAcropora microphthalmaon Exposure to High Solar Irradiance and Thermal Stress

(2015) Andrew J. Weston et al.   MOLECULAR & CELLULAR PROTEOMICS

The role of transcriptome resilience in resistance of corals to bleaching

(2015) Francois O. Seneca et al.   MOLECULAR ECOLOGY

Building coral reef resilience through assisted evolution

(2015) Madeleine J. H. van Oppen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The genome ofAiptasia, a sea anemone model for coral symbiosis

(2015) Sebastian Baumgarten et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Limits to the thermal tolerance of corals adapted to a highly fluctuating, naturally extreme temperature environment

(2015) Verena Schoepf et al.   Scientific Reports

Niche acclimatization in Red Sea corals is dependent on flexibility of host-symbiont association

(2015) M Ziegler et al.   MARINE ECOLOGY PROGRESS SERIES

Whole transcriptome analysis reveals changes in expression of immune-related genes during and after bleaching in a reef-building coral

(2015) J. H. Pinzon et al.   Royal Society Open Science

Change in algal symbiont communities after bleaching, not prior heat exposure, increases heat tolerance of reef corals

(2014) Rachel N. Silverstein et al.   GLOBAL CHANGE BIOLOGY

Morphological revision of the genus Aiptasia and the family Aiptasiidae (Cnidaria, Actiniaria, Metridioidea)

(2014) ALEJANDRO GRAJALES et al.   ZOOTAXA

The engine of the reef: photobiology of the coral–algal symbiosis

(2014) Melissa S. Roth   Frontiers in Microbiology

Isolation of clonal axenic strains of the symbiotic dinoflagellateSymbiodiniumand their growth and host specificity1

(2013) Tingting Xiang et al.   JOURNAL OF PHYCOLOGY

Corals from the Persian/Arabian Gulf as models for thermotolerant reef-builders: Prevalence of clade C3 Symbiodinium, host fluorescence and ex situ temperature tolerance

(2013) B. Hume et al.   MARINE POLLUTION BULLETIN

The Skeletal Proteome of the Coral Acropora millepora: The Evolution of Calcification by Co-Option and Domain Shuffling

(2013) Paula Ramos-Silva et al.   MOLECULAR BIOLOGY AND EVOLUTION

Proteomic analysis of skeletal organic matrix from the stony coral Stylophora pistillata

(2013) J. L. Drake et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genomic basis for coral resilience to climate change

(2013) Daniel J. Barshis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Statistical Inference from Multiple iTRAQ Experiments without Using Common Reference Standards

(2012) Shelley M. Herbrich et al.   JOURNAL OF PROTEOME RESEARCH

Insights into the regulation of protein abundance from proteomic and transcriptomic analyses

(2012) Christine Vogel et al.   NATURE REVIEWS GENETICS

Excess algal symbionts increase the susceptibility of reef corals to bleaching

(2012) Ross Cunning et al.   Nature Climate Change

Protein Expression Regulation under Oxidative Stress

(2011) Christine Vogel et al.   MOLECULAR & CELLULAR PROTEOMICS

A dynamic model of proteome changes reveals new roles for transcript alteration in yeast

(2011) M. V. Lee et al.   Molecular Systems Biology

Molecular chaperones in protein folding and proteostasis

(2011) F. Ulrich Hartl et al.   NATURE

Controlling gene expression in response to stress

(2011) Eulàlia de Nadal et al.   NATURE REVIEWS GENETICS

Differential Responses of the Coral Host and Their Algal Symbiont to Thermal Stress

(2011) William Leggat et al.   PLoS One

Apoptosis and the selective survival of host animals following thermal bleaching in zooxanthellate corals

(2011) D. Tchernov et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Resistance to thermal stress in corals without changes in symbiont composition

(2011) A. J. Bellantuono et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Golgi Bypass: Skirting Around the Heart of Classical Secretion

(2011) A. G. Grieve et al.   Cold Spring Harbor Perspectives in Biology

Coral thermal tolerance shaped by local adaptation of photosymbionts

(2011) E. J. Howells et al.   Nature Climate Change

Generation and analysis of transcriptomic resources for a model system on the rise: the sea anemone Aiptasia pallida and its dinoflagellate endosymbiont

(2009) Shinichi Sunagawa et al.   BMC GENOMICS

Correlation of mRNA and protein in complex biological samples

(2009) Tobias Maier et al.   FEBS LETTERS

The Nrf2-Antioxidant Response Element Signaling Pathway and Its Activation by Oxidative Stress

(2009) Truyen Nguyen et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Transcriptomic responses to heat stress and bleaching in the elkhorn coral Acropora palmata

(2009) MK DeSalvo et al.   MARINE ECOLOGY PROGRESS SERIES

Cellular mechanisms of Cnidarian bleaching: stress causes the collapse of symbiosis

(2008) V. M. Weis   JOURNAL OF EXPERIMENTAL BIOLOGY

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

(2008) Jürgen Cox et al.   NATURE BIOTECHNOLOGY