Two divergent Symbiodinium genomes reveal conservation of a gene cluster for sunscreen biosynthesis and recently lost genes

Insights into the red algae and eukaryotic evolution from the genome ofPorphyra umbilicalis(Bangiophyceae, Rhodophyta)

(2017) Susan H. Brawley et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Intraspecific and interspecific variation in thermotolerance and photoacclimation in Symbiodinium dinoflagellates

(2017) Erika M. Díaz-Almeyda et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Signatures of adaptation and symbiosis in genomes and transcriptomes of Symbiodinium

(2017) Raúl A. González-Pech et al.   Scientific Reports

A draft genome of the brown alga,Cladosiphon okamuranus, S-strain: a platform for future studies of ‘mozuku’ biology

(2016) Koki Nishitsuji et al.   DNA RESEARCH

Symbiodinium population genetics: testing for species boundaries and analysing samples with mixed genotypes

(2016) Drew C. Wham et al.   MOLECULAR ECOLOGY

CDD/SPARCLE: functional classification of proteins via subfamily domain architectures

(2016) Aron Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

Heat Induction of Cyclic Electron Flow around Photosystem I in the Symbiotic DinoflagellateSymbiodinium

(2016) Yusuke Aihara et al.   PLANT PHYSIOLOGY

Major transitions in dinoflagellate evolution unveiled by phylotranscriptomics

(2016) Jan Janouškovec et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Protein networks identify novel symbiogenetic genes resulting from plastid endosymbiosis

(2016) Raphaël Méheust et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Reefgenomics.Org - a repository for marine genomics data

(2016) Yi Jin Liew et al.   Database-The Journal of Biological Databases and Curation

Comparative genomics explains the evolutionary success of reef-forming corals

(2016) Debashish Bhattacharya et al.   eLife

Study of Cnidarian-Algal Symbiosis in the “Omics” Age

(2016) Eli Meyer et al.   BIOLOGICAL BULLETIN

Genomes of coral dinoflagellate symbionts highlight evolutionary adaptations conducive to a symbiotic lifestyle

(2016) M. Aranda et al.   Scientific Reports

Multifunctional polyketide synthase genes identified by genomic survey of the symbiotic dinoflagellate, Symbiodinium minutum

(2015) Girish Beedessee et al.   BMC GENOMICS

Comparison of the terrestrial cyanobacteriumLeptolyngbyasp. NIES-2104 and the freshwaterLeptolyngbya boryanaPCC 6306 genomes

(2015) Yohei Shimura et al.   DNA RESEARCH

Symbiodinium tridacnidorumsp. nov., a dinoflagellate common to Indo-Pacific giant clams, and a revised morphological description ofSymbiodinium microadriaticumFreudenthal, emended Trench & Blank

(2015) Sung Yeon Lee et al.   EUROPEAN JOURNAL OF PHYCOLOGY

Symbiodinium necroappetenssp. nov. (Dinophyceae): an opportunist ‘zooxanthella’ found in bleached and diseased tissues of Caribbean reef corals

(2015) Todd C. LaJeunesse et al.   EUROPEAN JOURNAL OF PHYCOLOGY

Dynamics and mechanisms of DNA repair by photolyase

(2015) Zheyun Liu et al.   PHYSICAL CHEMISTRY CHEMICAL PHYSICS

The genome ofAiptasia, a sea anemone model for coral symbiosis

(2015) Sebastian Baumgarten et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Symbiodinium kawagutii genome illuminates dinoflagellate gene expression and coral symbiosis

(2015) S. Lin et al.   SCIENCE

Diversification of the Light-Harvesting Complex Gene Family via Intra- and Intergenic Duplications in the Coral Symbiotic Alga Symbiodinium

(2015) Shinichiro Maruyama et al.   PLoS One

Discovery of Gene Cluster for Mycosporine-Like Amino Acid Biosynthesis from Actinomycetales Microorganisms and Production of a Novel Mycosporine-Like Amino Acid by Heterologous Expression

(2014) Kiyoko T. Miyamoto et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A genomic approach to coral-dinoflagellate symbiosis: studies of Acropora digitifera and Symbiodinium minutum

(2014) Chuya Shinzato et al.   Frontiers in Microbiology

Multi-gene analysis ofSymbiodiniumdinoflagellates: a perspective on rarity, symbiosis, and evolution

(2014) Xavier Pochon et al.   PeerJ

Draft Assembly of the Symbiodinium minutum Nuclear Genome Reveals Dinoflagellate Gene Structure

(2013) Eiichi Shoguchi et al.   CURRENT BIOLOGY

dUTPases, the unexplored family of signalling molecules

(2013) José R Penadés et al.   CURRENT OPINION IN MICROBIOLOGY

Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing

(2013) P. M. Shih et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

MarinegenomicsDB: An Integrated Genome Viewer for Community-Based Annotation of Genomes

(2013) Ryo Koyanagi et al.   ZOOLOGICAL SCIENCE

IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth

(2012) Y. Peng et al.   BIOINFORMATICS

Unveiling Plant mTERF Functions

(2012) Pedro Robles et al.   Molecular Plant

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

Mechanisms of Maternal Inheritance of Dinoflagellate Symbionts in the Acoelomorph WormWaminoa litus

(2012) Tomoe Hikosaka-Katayama et al.   ZOOLOGICAL SCIENCE

GeoSymbio: a hybrid, cloud-based web application of global geospatial bioinformatics and ecoinformatics for Symbiodinium-host symbioses

(2011) ERIK C. FRANKLIN et al.   Molecular Ecology Resources

Using the Acropora digitifera genome to understand coral responses to environmental change

(2011) Chuya Shinzato et al.   NATURE

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Microbial ultraviolet sunscreens

(2011) Qunjie Gao et al.   NATURE REVIEWS MICROBIOLOGY

Plastid gene expression and plant development require a plastidic protein of the mitochondrial transcription termination factor family

(2011) E. Babiychuk et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genomic understanding of dinoflagellates

(2011) Senjie Lin   RESEARCH IN MICROBIOLOGY

Dinoflagellate Genome Evolution

(2010) Jennifer H. Wisecaver et al.   Annual Review of Microbiology

Scaffolding pre-assembled contigs using SSPACE

(2010) Marten Boetzer et al.   BIOINFORMATICS

TreeGraph 2: Combining and visualizing evidence from different phylogenetic analyses

(2010) Ben C Stöver et al.   BMC BIOINFORMATICS

A new Symbiodinium clade (Dinophyceae) from soritid foraminifera in Hawai’i

(2010) Xavier Pochon et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The Genetic and Molecular Basis for Sunscreen Biosynthesis in Cyanobacteria

(2010) E. P. Balskus et al.   SCIENCE

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

JBrowse: A next-generation genome browser

(2009) M. E. Skinner et al.   GENOME RESEARCH

The sequence and de novo assembly of the giant panda genome

(2009) Ruiqiang Li et al.   NATURE

The Pfam protein families database

(2009) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Distinct Gene Number-Genome Size Relationships for Eukaryotes and Non-Eukaryotes: Gene Content Estimation for Dinoflagellate Genomes

(2009) Yubo Hou et al.   PLoS One

Different thermal sensitivity of the repair of photodamaged photosynthetic machinery in cultured Symbiodinium species

(2009) S. Takahashi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Widespread recycling of processed cDNAs in dinoflagellates

(2008) Claudio H. Slamovits et al.   CURRENT BIOLOGY

Phylogenetic analyses of potentially free-living Symbiodinium spp. isolated from coral reef sand in Okinawa, Japan

(2008) Mamiko Hirose et al.   MARINE BIOLOGY

Neurotoxins from Marine Dinoflagellates: A Brief Review

(2008) Da-Zhi Wang   Marine Drugs

Enzymes of the shikimic acid pathway encoded in the genome of a basal metazoan, Nematostella vectensis, have microbial origins

(2008) A. Starcevic et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Functional diversity in coral-dinoflagellate symbiosis

(2008) M. Stat et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Enhanced photoprotection pathways in symbiotic dinoflagellates of shallow-water corals and other cnidarians

(2008) J. M. Reynolds et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA