Genomes of coral dinoflagellate symbionts highlight evolutionary adaptations conducive to a symbiotic lifestyle
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Title
Genomes of coral dinoflagellate symbionts highlight evolutionary adaptations conducive to a symbiotic lifestyle
Authors
Keywords
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Journal
Scientific Reports
Volume 6, Issue 1, Pages -
Publisher
Springer Nature
Online
2016-12-22
DOI
10.1038/srep39734
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Note: Only part of the references are listed.- Gene Expression Variation Resolves Species and Individual Strains among Coral-Associated Dinoflagellates within the GenusSymbiodinium
- (2016) John E. Parkinson et al. Genome Biology and Evolution
- Sex, Scavengers, and Chaperones: Transcriptome Secrets of DivergentSymbiodiniumThermal Tolerances
- (2016) Rachel A. Levin et al. MOLECULAR BIOLOGY AND EVOLUTION
- Comparative genomics explains the evolutionary success of reef-forming corals
- (2016) Debashish Bhattacharya et al. eLife
- Study of Cnidarian-Algal Symbiosis in the “Omics” Age
- (2016) Eli Meyer et al. BIOLOGICAL BULLETIN
- Symbiodinium tridacnidorumsp. nov., a dinoflagellate common to Indo-Pacific giant clams, and a revised morphological description ofSymbiodinium microadriaticumFreudenthal, emended Trench & Blank
- (2015) Sung Yeon Lee et al. EUROPEAN JOURNAL OF PHYCOLOGY
- Dinoflagellate Gene Structure and Intron Splice Sites in a Genomic Tandem Array
- (2015) Gregory S. Mendez et al. JOURNAL OF EUKARYOTIC MICROBIOLOGY
- Symbiodiniumtranscriptome and global responses of cells to immediate changes in light intensity when grown under autotrophic or mixotrophic conditions
- (2015) Tingting Xiang et al. PLANT JOURNAL
- The genome ofAiptasia, a sea anemone model for coral symbiosis
- (2015) Sebastian Baumgarten et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The Symbiodinium kawagutii genome illuminates dinoflagellate gene expression and coral symbiosis
- (2015) S. Lin et al. SCIENCE
- Nitrogen cycling in corals: the key to understanding holobiont functioning?
- (2015) Nils Rädecker et al. TRENDS IN MICROBIOLOGY
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
- (2014) Alexandros Stamatakis BIOINFORMATICS
- De novo assembly and characterization of the transcriptome of the toxic dinoflagellate Karenia brevis
- (2014) Darcie E Ryan et al. BMC GENOMICS
- Thermal responses of Symbiodinium photosynthetic carbon assimilation
- (2014) Clinton A. Oakley et al. CORAL REEFS
- Unfolding the secrets of coral–algal symbiosis
- (2014) Nedeljka Rosic et al. ISME Journal
- Lineage-Specific Transcriptional Profiles of Symbiodinium spp. Unaltered by Heat Stress in a Coral Host
- (2014) Daniel J. Barshis et al. MOLECULAR BIOLOGY AND EVOLUTION
- Identification of MicroRNAs in the Coral Stylophora pistillata
- (2014) Yi Jin Liew et al. PLoS One
- L_RNA_scaffolder: scaffolding genomes with transcripts
- (2013) Wei Xue et al. BMC GENOMICS
- Integrating microRNA and mRNA expression profiling in Symbiodinium microadriaticum, a dinoflagellate symbiont of reef-building corals
- (2013) Sebastian Baumgarten et al. BMC GENOMICS
- Draft Assembly of the Symbiodinium minutum Nuclear Genome Reveals Dinoflagellate Gene Structure
- (2013) Eiichi Shoguchi et al. CURRENT BIOLOGY
- Horizontal Gene Transfer is a Significant Driver of Gene Innovation in Dinoflagellates
- (2013) Jennifer H. Wisecaver et al. Genome Biology and Evolution
- Cas9 as a versatile tool for engineering biology
- (2013) Prashant Mali et al. NATURE METHODS
- De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
- (2013) Brian J Haas et al. Nature Protocols
- Challenges in homology search: HMMER3 and convergent evolution of coiled-coil regions
- (2013) Jaina Mistry et al. NUCLEIC ACIDS RESEARCH
- SLC4 family transporters in a marine diatom directly pump bicarbonate from seawater
- (2013) K. Nakajima et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
- (2013) Keith R Bradnam et al. GigaScience
- Protein evolution in two co-occurring types of Symbiodinium: an exploration into the genetic basis of thermal tolerance in Symbiodinium clade D
- (2012) Jason T Ladner et al. BMC EVOLUTIONARY BIOLOGY
- A single-cell view of ammonium assimilation in coral–dinoflagellate symbiosis
- (2012) Mathieu Pernice et al. ISME Journal
- A genetics-based description ofSymbiodinium minutumsp. nov. andS. psygmophilumsp. nov. (Dinophyceae), two dinoflagellates symbiotic with cnidaria
- (2012) Todd C. Lajeunesse et al. JOURNAL OF PHYCOLOGY
- Cell Biology of Cnidarian-Dinoflagellate Symbiosis
- (2012) S. K. Davy et al. MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Symbiodinium Transcriptomes: Genome Insights into the Dinoflagellate Symbionts of Reef-Building Corals
- (2012) Till Bayer et al. PLoS One
- Dinoflagellate tandem array gene transcripts are highly conserved and not polycistronic
- (2012) M. Beauchemin et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A quantitative review of the lifestyle, habitat and trophic diversity of dinoflagellates (Dinoflagellata, Alveolata)
- (2012) Fernando Gómez SYSTEMATICS AND BIODIVERSITY
- Nutrient enrichment can increase the susceptibility of reef corals to bleaching
- (2012) Jörg Wiedenmann et al. Nature Climate Change
- SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler
- (2012) Ruibang Luo et al. GigaScience
- ProtTest 3: fast selection of best-fit models of protein evolution
- (2011) Diego Darriba et al. BIOINFORMATICS
- Quality control and preprocessing of metagenomic datasets
- (2011) R. Schmieder et al. BIOINFORMATICS
- Using the Acropora digitifera genome to understand coral responses to environmental change
- (2011) Chuya Shinzato et al. NATURE
- The UniProt-GO Annotation database in 2011
- (2011) E. C. Dimmer et al. NUCLEIC ACIDS RESEARCH
- Estimating the timing of early eukaryotic diversification with multigene molecular clocks
- (2011) L. W. Parfrey et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Genomic understanding of dinoflagellates
- (2011) Senjie Lin RESEARCH IN MICROBIOLOGY
- Dinoflagellate Genome Evolution
- (2010) Jennifer H. Wisecaver et al. Annual Review of Microbiology
- Gene expression profiles of cytosolic heat shock proteins Hsp70 and Hsp90 from symbiotic dinoflagellates in response to thermal stress: possible implications for coral bleaching
- (2010) Nedeljka N. Rosic et al. CELL STRESS & CHAPERONES
- Symbiodinium—Invertebrate Symbioses and the Role of Metabolomics
- (2010) Benjamin R. Gordon et al. Marine Drugs
- Transcriptome Profiling of a Toxic Dinoflagellate Reveals a Gene-Rich Protist and a Potential Impact on Gene Expression Due to Bacterial Presence
- (2010) Ahmed Moustafa et al. PLoS One
- High-quality draft assemblies of mammalian genomes from massively parallel sequence data
- (2010) S. Gnerre et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
- (2009) S. Capella-Gutierrez et al. BIOINFORMATICS
- Circos: An information aesthetic for comparative genomics
- (2009) M. Krzywinski et al. GENOME RESEARCH
- Distinct Gene Number-Genome Size Relationships for Eukaryotes and Non-Eukaryotes: Gene Content Estimation for Dinoflagellate Genomes
- (2009) Yubo Hou et al. PLoS One
- Evolutionary analysis of orthologous cDNA sequences from cultured and symbiotic dinoflagellate symbionts of reef-building corals (Dinophyceae: Symbiodinium)
- (2008) Christian R. Voolstra et al. Comparative Biochemistry and Physiology D-Genomics & Proteomics
- Cellular mechanisms of Cnidarian bleaching: stress causes the collapse of symbiosis
- (2008) V. M. Weis JOURNAL OF EXPERIMENTAL BIOLOGY
- Assessing the gene space in draft genomes
- (2008) Genis Parra et al. NUCLEIC ACIDS RESEARCH
- Influence of Co2Concentrating Mechanism on Photoinhibition in Synechococcus sp. PCC7942 (Cyanophyceae)
- (2008) Huimin Cheng et al. PHYCOLOGIA
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