Recruit symbiosis establishment and Symbiodiniaceae composition influenced by adult corals and reef sediment

Contrasting effects of Symbiodinium identity on coral host transcriptional profiles across latitudes

(2018) Sarah J. Barfield et al.   MOLECULAR ECOLOGY

Systematic Revision of Symbiodiniaceae Highlights the Antiquity and Diversity of Coral Endosymbionts

(2018) Todd C. LaJeunesse et al.   CURRENT BIOLOGY

Exploring mechanisms that affect coral cooperation: symbiont transmission mode, cell density and community composition

(2018) Carly D. Kenkel et al.   PeerJ

Establishment of a model for chemoattraction of Symbiodinium and characterization of chemotactic compounds in Acropora tenuis

(2017) Ryota Takeuchi et al.   FISHERIES SCIENCE

Population genetics of reef coral endosymbionts (Symbiodinium , Dinophyceae)

(2017) D. J. Thornhill et al.   MOLECULAR ECOLOGY

Population structure and connectivity of the mountainous star coral, Orbicella faveolata , throughout the wider Caribbean region

(2017) John P. Rippe et al.   Ecology and Evolution

Trans-generational specificity within a cnidarian–algal symbiosis

(2016) D. M. Poland et al.   CORAL REEFS

Consensus thermotolerance ranking for 110Symbiodiniumphylotypes: an exemplar utilization of a novel iterative partial-rank aggregation tool with broad application potential

(2016) Timothy D. Swain et al.   FUNCTIONAL ECOLOGY

Exploring the Symbiodinium rare biosphere provides evidence for symbiont switching in reef-building corals

(2016) Nadine M Boulotte et al.   ISME Journal

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

ggtree: anrpackage for visualization and annotation of phylogenetic trees with their covariates and other associated data

(2016) Guangchuang Yu et al.   Methods in Ecology and Evolution

Horizontal transmission of Symbiodinium cells between adult and juvenile corals is aided by benthic sediment

(2015) Matthew R. Nitschke et al.   CORAL REEFS

Dynamic regulation of partner abundance mediates response of reef coral symbioses to environmental change

(2015) R. Cunning et al.   ECOLOGY

Intraspecific diversity among partners drives functional variation in coral symbioses

(2015) John Everett Parkinson et al.   Scientific Reports

Estimating Trait Heritability in Highly Fecund Species

(2015) Sarah W. Davies et al.   G3-Genes Genomes Genetics

Trehalose Is a Chemical Attractant in the Establishment of Coral Symbiosis

(2015) Mary Hagedorn et al.   PLoS One

The effect of elevated temperature and substrate on free-living Symbiodinium cultures

(2014) M. R. Nitschke et al.   CORAL REEFS

Exploring the role of Micronesian islands in the maintenance of coral genetic diversity in the Pacific Ocean

(2014) S. W. Davies et al.   MOLECULAR ECOLOGY

New insights into the dynamics between reef corals and their associated dinoflagellate endosymbionts from population genetic studies

(2014) Iliana B. Baums et al.   MOLECULAR ECOLOGY

Deep-Sequencing Method for Quantifying Background Abundances of Symbiodinium Types: Exploring the Rare Symbiodinium Biosphere in Reef-Building Corals

(2014) Kate M. Quigley et al.   PLoS One

Quantifying crypticSymbiodiniumdiversity withinOrbicella faveolataandOrbicella franksiat the Flower Garden Banks, Gulf of Mexico

(2014) Elizabeth A. Green et al.   PeerJ

A cross-ocean comparison of responses to settlement cues in reef-building corals

(2014) Sarah W. Davies et al.   PeerJ

Historical thermal regimes define limits to coral acclimatization

(2013) Emily J. Howells et al.   ECOLOGY

Evidence for a host role in thermotolerance divergence between populations of the mustard hill coral (Porites astreoides ) from different reef environments

(2013) C. D. Kenkel et al.   MOLECULAR ECOLOGY

Multiple Symbiont Acquisition Strategies as an Adaptive Mechanism in the Coral Stylophora pistillata

(2013) Kristen A. Byler et al.   PLoS One

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

The promiscuous larvae: flexibility in the establishment of symbiosis in corals

(2012) V. R. Cumbo et al.   CORAL REEFS

Variation in Symbiodinium communities in juvenile Briareum asbestinum (Cnidaria: Octocorallia) over temporal and spatial scales

(2012) DM Poland et al.   MARINE ECOLOGY PROGRESS SERIES

Novel polymorphic microsatellite markers for population genetics of the endangered Caribbean star coral, Montastraea faveolata

(2012) Sarah W. Davies et al.   Marine Biodiversity

R453Plus1Toolbox: an R/Bioconductor package for analyzing Roche 454 Sequencing data

(2011) Hans-Ulrich Klein et al.   BIOINFORMATICS

Genetic diversity of free-living Symbiodinium in surface water and sediment of Hawai‘i and Florida

(2011) M. Takabayashi et al.   CORAL REEFS

GeoSymbio: a hybrid, cloud-based web application of global geospatial bioinformatics and ecoinformatics for Symbiodinium-host symbioses

(2011) ERIK C. FRANKLIN et al.   Molecular Ecology Resources

BLAST-EXPLORER helps you building datasets for phylogenetic analysis

(2010) Alexis Dereeper et al.   BMC EVOLUTIONARY BIOLOGY

COMPARISON OF ENDOSYMBIOTIC AND FREE-LIVING SYMBIODINIUM (DINOPHYCEAE) DIVERSITY IN A HAWAIIAN REEF ENVIRONMENT1

(2010) Xavier Pochon et al.   JOURNAL OF PHYCOLOGY

Bacterial Acquisition in Juveniles of Several Broadcast Spawning Coral Species

(2010) Koty H. Sharp et al.   PLoS One

Environmental Symbiont Acquisition May Not Be the Solution to Warming Seas for Reef-Building Corals

(2010) Mary Alice Coffroth et al.   PLoS One

Host-symbiont recombination versus natural selection in the response of coral-dinoflagellate symbioses to environmental disturbance

(2010) T. C. LaJeunesse et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Highly infectious symbiont dominates initial uptake in coral juveniles

(2009) DAVID ABREGO et al.   MOLECULAR ECOLOGY

Onset of algal endosymbiont specificity varies among closely related species ofAcroporacorals during early ontogeny

(2009) DAVID ABREGO et al.   MOLECULAR ECOLOGY

Methods for sampling free-living Symbiodinium (zooxanthellae) and their distribution and abundance at Lizard Island (Great Barrier Reef)

(2008) Raechel A. Littman et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Exposure to sediment enhances primary acquisition of Symbiodinium by asymbiotic coral larvae

(2008) LM Adams et al.   MARINE ECOLOGY PROGRESS SERIES

Phylogeny.fr: robust phylogenetic analysis for the non-specialist

(2008) A. Dereeper et al.   NUCLEIC ACIDS RESEARCH

Macroalgal-Associated Dinoflagellates Belonging to the Genus Symbiodinium in Caribbean Reefs

(2008) Isabel Porto et al.   PLoS One

Bleaching susceptibility and mortality of corals are determined by fine-scale differences in symbiont type

(2008) E. M. Sampayo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Species-specific interactions between algal endosymbionts and coral hosts define their bleaching response to heat and light stress

(2008) D. Abrego et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Coral bleaching: the role of the host

(2008) Andrew H. Baird et al.   TRENDS IN ECOLOGY & EVOLUTION