Quantifying crypticSymbiodiniumdiversity withinOrbicella faveolataandOrbicella franksiat the Flower Garden Banks, Gulf of Mexico

MCMC Methods for Multi-Response Generalized Linear Mixed Models: TheMCMCglmmRPackage

(2015) Jarrod D. Hadfield   Journal of Statistical Software

Deep-Sequencing Method for Quantifying Background Abundances of Symbiodinium Types: Exploring the Rare Symbiodinium Biosphere in Reef-Building Corals

(2014) Kate M. Quigley et al.   PLoS One

A cross-ocean comparison of responses to settlement cues in reef-building corals

(2014) Sarah W. Davies et al.   PeerJ

HOST-SPECIALIST LINEAGES DOMINATE THE ADAPTIVE RADIATION OF REEF CORAL ENDOSYMBIONTS

(2013) Daniel J. Thornhill et al.   EVOLUTION

Evidence for a host role in thermotolerance divergence between populations of the mustard hill coral (Porites astreoides ) from different reef environments

(2013) C. D. Kenkel et al.   MOLECULAR ECOLOGY

Differential abundance analysis for microbial marker-gene surveys

(2013) Joseph N Paulson et al.   NATURE METHODS

Analysis Tool Web Services from the EMBL-EBI

(2013) Hamish McWilliam et al.   NUCLEIC ACIDS RESEARCH

No Control Genes Required: Bayesian Analysis of qRT-PCR Data

(2013) Mikhail V. Matz et al.   PLoS One

Bacterial Associates of Two Caribbean Coral Species Reveal Species-Specific Distribution and Geographic Variability

(2012) Kathleen M. Morrow et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research--an update

(2012) R. Peakall et al.   BIOINFORMATICS

The Occurrence of Mixed Infections ofSymbiodinium(Dinoflagellata) within Individual Hosts

(2012) Scott A. Fay et al.   JOURNAL OF PHYCOLOGY

A genetics-based description ofSymbiodinium minutumsp. nov. andS. psygmophilumsp. nov. (Dinophyceae), two dinoflagellates symbiotic with cnidaria

(2012) Todd C. Lajeunesse et al.   JOURNAL OF PHYCOLOGY

Connectivity of Caribbean coral populations: complementary insights from empirical and modelled gene flow

(2012) NICOLA L. FOSTER et al.   MOLECULAR ECOLOGY

ITS2 Database IV: Interactive taxon sampling for internal transcribed spacer 2 based phylogenies

(2012) Christian Koetschan et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Identifying and Characterizing Alternative Molecular Markers for the Symbiotic and Free-Living Dinoflagellate Genus Symbiodinium

(2012) Xavier Pochon et al.   PLoS One

Endosymbiotic flexibility associates with environmental sensitivity in scleractinian corals

(2012) H. M. Putnam et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Specificity is rarely absolute in coral-algal symbiosis: implications for coral response to climate change

(2012) R. N. Silverstein et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Chromera velia is Endosymbiotic in Larvae of the Reef Corals Acropora digitifera and A. tenuis

(2012) Vivian R. Cumbo et al.   PROTIST

Taxonomic classification of the reef coral family Mussidae (Cnidaria: Anthozoa: Scleractinia)

(2012) ANN F. BUDD et al.   ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Novel polymorphic microsatellite markers for population genetics of the endangered Caribbean star coral, Montastraea faveolata

(2012) Sarah W. Davies et al.   Marine Biodiversity

SHRiMP2: Sensitive yet Practical Short Read Mapping

(2011) Matei David et al.   BIOINFORMATICS

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

(2011) F. Sievers et al.   Molecular Systems Biology

Variation in Symbiodinium ITS2 Sequence Assemblages among Coral Colonies

(2011) Michael Stat et al.   PLoS One

Improved Resolution of Reef-Coral Endosymbiont (Symbiodinium) Species Diversity, Ecology, and Evolution through psbA Non-Coding Region Genotyping

(2011) Todd C. LaJeunesse et al.   PLoS One

STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method

(2011) Dent A. Earl et al.   Conservation Genetics Resources

Coral thermal tolerance shaped by local adaptation of photosymbionts

(2011) E. J. Howells et al.   Nature Climate Change

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Coral-associated bacterial communities on Ningaloo Reef, Western Australia

(2010) Janja Ceh et al.   FEMS MICROBIOLOGY ECOLOGY

Long-standing environmental conditions, geographic isolation and host-symbiont specificity influence the relative ecological dominance and genetic diversification of coral endosymbionts in the genusSymbiodinium

(2010) Todd C. LaJeunesse et al.   JOURNAL OF BIOGEOGRAPHY

Specificity and stability in high latitude eastern Pacific coral-algal symbioses

(2010) T. C. LaJeunesse et al.   LIMNOLOGY AND OCEANOGRAPHY

In situ photobiology of corals over large depth ranges: A multivariate analysis on the roles of environment, host, and algal symbiont

(2010) P. R. Frade et al.   LIMNOLOGY AND OCEANOGRAPHY

The Relative Significance of Host–Habitat, Depth, and Geography on the Ecology, Endemism, and Speciation of Coral Endosymbionts in the Genus Symbiodinium

(2010) J. Christine Finney et al.   MICROBIAL ECOLOGY

Coral host transcriptomic states are correlated withSymbiodiniumgenotypes

(2010) M. K. DeSALVO et al.   MOLECULAR ECOLOGY

A new Symbiodinium clade (Dinophyceae) from soritid foraminifera in Hawai’i

(2010) Xavier Pochon et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

A new bioinformatics analysis tools framework at EMBL-EBI

(2010) M. Goujon et al.   NUCLEIC ACIDS RESEARCH

Potential Costs of Acclimatization to a Warmer Climate: Growth of a Reef Coral with Heat Tolerant vs. Sensitive Symbiont Types

(2010) Alison Jones et al.   PLoS One

Genetic Divergence across Habitats in the Widespread Coral Seriatopora hystrix and Its Associated Symbiodinium

(2010) Pim Bongaerts et al.   PLoS One

Host-symbiont recombination versus natural selection in the response of coral-dinoflagellate symbioses to environmental disturbance

(2010) T. C. LaJeunesse et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Effects of temperature on gene expression in embryos of the coral Montastraea faveolata

(2009) Christian R Voolstra et al.   BMC GENOMICS

Juvenile corals can acquire more carbon from high-performance algal symbionts

(2009) N. E. Cantin et al.   CORAL REEFS

Bacterial diversity and White Plague Disease-associated community changes in the Caribbean coral Montastraea faveolata

(2009) Shinichi Sunagawa et al.   ISME Journal

Population structure of Symbiodinium sp. associated with the common sea fan, Gorgonia ventalina, in the Florida Keys across distance, depth, and time

(2009) Nathan L. Kirk et al.   MARINE BIOLOGY

Specificity in communities of Symbiodinium in corals from Johnston Atoll

(2009) M Stat et al.   MARINE ECOLOGY PROGRESS SERIES

SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building

(2009) M. Gouy et al.   MOLECULAR BIOLOGY AND EVOLUTION

Inferring weak population structure with the assistance of sample group information

(2009) MELISSA J. HUBISZ et al.   Molecular Ecology Resources

The ITS2 Database III—sequences and structures for phylogeny

(2009) Christian Koetschan et al.   NUCLEIC ACIDS RESEARCH

The Roles and Interactions of Symbiont, Host and Environment in Defining Coral Fitness

(2009) Jos C. Mieog et al.   PLoS One

Outbreak and persistence of opportunistic symbiotic dinoflagellates during the 2005 Caribbean mass coral 'bleaching' event

(2009) T. C. LaJeunesse et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Statistical Methods for Detecting Differentially Abundant Features in Clinical Metagenomic Samples

(2009) James Robert White et al.   PLoS Computational Biology

High genetic differentiation and cross-shelf patterns of genetic diversity among Great Barrier Reef populations of Symbiodinium

(2008) E. J. Howells et al.   CORAL REEFS

CORRESPONDENCE BETWEEN COLD TOLERANCE AND TEMPERATE BIOGEOGRAPHY IN A WESTERN ATLANTICSYMBIODINIUM(DINOPHYTA) LINEAGE1

(2008) Daniel J. Thornhill et al.   JOURNAL OF PHYCOLOGY

Bleaching susceptibility and mortality of corals are determined by fine-scale differences in symbiont type

(2008) E. M. Sampayo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Enhanced photoprotection pathways in symbiotic dinoflagellates of shallow-water corals and other cnidarians

(2008) J. M. Reynolds et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A community change in the algal endosymbionts of a scleractinian coral following a natural bleaching event: field evidence of acclimatization

(2008) A.M Jones et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES