Contrasting heat stress response patterns of coral holobionts across the Red Sea suggest distinct mechanisms of thermal tolerance

Response diversity in corals: hidden differences in bleaching mortality among cryptic Pocillopora species

(2021) Scott C. Burgess et al.   ECOLOGY

Remarkably high and consistent tolerance of a Red Sea coral to acute and chronic thermal stress exposures

(2021) Nicolas R. Evensen et al.   LIMNOLOGY AND OCEANOGRAPHY

Going with the flow: how corals in high‐flow environments can beat the heat

(2021) James Fifer et al.   MOLECULAR ECOLOGY

Fast and pervasive transcriptomic resilience and acclimation of extremely heat-tolerant coral holobionts from the northern Red Sea

(2021) Romain Savary et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Surface Topography, Bacterial Carrying Capacity, and the Prospect of Microbiome Manipulation in the Sea Anemone Coral Model Aiptasia

(2021) Rúben M. Costa et al.   Frontiers in Microbiology

Synergistic Effects of Thermal Stress and Estuarine Discharge on Transcriptomic Variation of Montastraea cavernosa Corals in Southeast Florida

(2021) Michael S. Studivan et al.   Frontiers in Marine Science

Molecular and skeletal fingerprints of scleractinian coral biomineralization: From the sea surface to mesophotic depths

(2020) Assaf Malik et al.   Acta Biomaterialia

Corals in the hottest reefs in the world exhibit symbiont fidelity not flexibility

(2020) Emily J. Howells et al.   MOLECULAR ECOLOGY

Fine-scale delineation of Symbiodiniaceae genotypes on a previously bleached central Red Sea reef system demonstrates a prevalence of coral host-specific associations

(2020) B. C. C. Hume et al.   CORAL REEFS

Shifting in the Dominant Bacterial Group Endozoicomonas Is Independent of the Dissociation With Coral Symbiont Algae

(2020) Jia-Ho Shiu et al.   Frontiers in Microbiology

Coral-Associated Viral Assemblages From the Central Red Sea Align With Host Species and Contribute to Holobiont Genetic Diversity

(2020) Anny Cárdenas et al.   Frontiers in Microbiology

Increasing comparability among coral bleaching experiments

(2020) A.G. Grottoli et al.   ECOLOGICAL APPLICATIONS

Coral Probiotics: Premise, Promise, Prospects

(2020) Raquel S. Peixoto et al.   Annual Review of Animal Biosciences

Adaptive divergence, neutral panmixia, and algal symbiont population structure in the temperate coral Astrangia poculata along the Mid-Atlantic United States

(2020) Hannah E. Aichelman et al.   PeerJ

SymPortal: a novel analytical framework and platform for coral algal symbiont next-generation sequencing ITS2 profiling

(2019) B. C. C. Hume et al.   Molecular Ecology Resources

Heritable variation in bleaching responses and its functional genomic basis in reef‐building corals ( Orbicella faveolata )

(2019) Katherine E. Dziedzic et al.   MOLECULAR ECOLOGY

Using naturally occurring climate resilient corals to construct bleaching-resistant nurseries

(2019) Megan K. Morikawa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Coral bacterial community structure responds to environmental change in a host-specific manner

(2019) Maren Ziegler et al.   Nature Communications

Environmental latitudinal gradients and host‐specificity shape Symbiodiniaceae distribution in Red Sea Porites corals

(2019) Tullia I. Terraneo et al.   JOURNAL OF BIOGEOGRAPHY

Free‐living and symbiotic lifestyles of a thermotolerant coral endosymbiont display profoundly distinct transcriptomes under both stable and heat stress conditions

(2019) Anthony J. Bellantuono et al.   MOLECULAR ECOLOGY

Spatial and temporal patterns of mass bleaching of corals in the Anthropocene

(2018) Terry P. Hughes et al.   SCIENCE

Metaorganisms in extreme environments: do microbes play a role in organismal adaptation?

(2018) Corinna Bang et al.   ZOOLOGY

Dominance of Endozoicomonas bacteria throughout coral bleaching and mortality suggests structural inflexibility of the Pocillopora verrucosa microbiome

(2018) Claudia Pogoreutz et al.   Ecology and Evolution

An improved primer set and amplification protocol with increased specificity and sensitivity targeting the Symbiodinium ITS2 region

(2018) Benjamin C.C. Hume et al.   PeerJ

Systematic Revision of Symbiodiniaceae Highlights the Antiquity and Diversity of Coral Endosymbionts

(2018) Todd C. LaJeunesse et al.   CURRENT BIOLOGY

Marine probiotics: increasing coral resistance to bleaching through microbiome manipulation

(2018) Phillipe M. Rosado et al.   ISME Journal

Thermal refugia against coral bleaching throughout the northern Red Sea

(2017) Eslam O. Osman et al.   GLOBAL CHANGE BIOLOGY

Biogeography and molecular diversity of coral symbionts in the genus Symbiodinium around the Arabian Peninsula

(2017) Maren Ziegler et al.   JOURNAL OF BIOGEOGRAPHY

Bacterial community dynamics are linked to patterns of coral heat tolerance

(2017) Maren Ziegler et al.   Nature Communications

Comparative analysis of the genomes of Stylophora pistillata and Acropora digitifera provides evidence for extensive differences between species of corals

(2017) Christian R. Voolstra et al.   Scientific Reports

Common reef-building coral in the Northern Red Sea resistant to elevated temperature and acidification

(2017) Thomas Krueger et al.   Royal Society Open Science

Endozoicomonas genomes reveal functional adaptation and plasticity in bacterial strains symbiotically associated with diverse marine hosts

(2017) Matthew J. Neave et al.   Scientific Reports

Gene Expression Variation Resolves Species and Individual Strains among Coral-Associated Dinoflagellates within the GenusSymbiodinium

(2016) John E. Parkinson et al.   Genome Biology and Evolution

Differential specificity between closely related corals and abundant Endozoicomonas endosymbionts across global scales

(2016) Matthew J Neave et al.   ISME Journal

Near-optimal probabilistic RNA-seq quantification

(2016) Nicolas L Bray et al.   NATURE BIOTECHNOLOGY

Year-Long Monitoring of Physico-Chemical and Biological Variables Provide a Comparative Baseline of Coral Reef Functioning in the Central Red Sea

(2016) Anna Roik et al.   PLoS One

Ancestral genetic diversity associated with the rapid spread of stress-tolerant coral symbionts in response to Holocene climate change

(2016) Benjamin C. C. Hume et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Reefgenomics.Org - a repository for marine genomics data

(2016) Yi Jin Liew et al.   Database-The Journal of Biological Databases and Curation

Genomes of coral dinoflagellate symbionts highlight evolutionary adaptations conducive to a symbiotic lifestyle

(2016) M. Aranda et al.   Scientific Reports

Microbiome structure of the fungid coralCtenactis echinataaligns with environmental differences

(2015) Cornelia Roder et al.   MOLECULAR ECOLOGY

Genomic determinants of coral heat tolerance across latitudes

(2015) G. B. Dixon et al.   SCIENCE

Symbiodinium thermophilum sp. nov., a thermotolerant symbiotic alga prevalent in corals of the world's hottest sea, the Persian/Arabian Gulf

(2015) B. C. C. Hume et al.   Scientific Reports

Dose-Response Analysis Using R

(2015) Christian Ritz et al.   PLoS One

Minimum entropy decomposition: Unsupervised oligotyping for sensitive partitioning of high-throughput marker gene sequences

(2014) A Murat Eren et al.   ISME Journal

Lineage-Specific Transcriptional Profiles of Symbiodinium spp. Unaltered by Heat Stress in a Coral Host

(2014) Daniel J. Barshis et al.   MOLECULAR BIOLOGY AND EVOLUTION

Mechanisms of reef coral resistance to future climate change

(2014) S. R. Palumbi et al.   SCIENCE

Poppr: an R package for genetic analysis of populations with clonal, partially clonal, and/or sexual reproduction

(2014) Zhian N. Kamvar et al.   PeerJ

The Microbiome of the Red Sea Coral Stylophora pistillata Is Dominated by Tissue-Associated Endozoicomonas Bacteria

(2013) Till Bayer et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Integrating microRNA and mRNA expression profiling in Symbiodinium microadriaticum, a dinoflagellate symbiont of reef-building corals

(2013) Sebastian Baumgarten et al.   BMC GENOMICS

A coral reef refuge in the Red Sea

(2013) Maoz Fine et al.   GLOBAL CHANGE BIOLOGY

Two spatial scales in a bleaching event: Corals from the mildest and the most extreme thermal environments escape mortality

(2013) Jesús Pineda et al.   LIMNOLOGY AND OCEANOGRAPHY

Corals from the Persian/Arabian Gulf as models for thermotolerant reef-builders: Prevalence of clade C3 Symbiodinium, host fluorescence and ex situ temperature tolerance

(2013) B. Hume et al.   MARINE POLLUTION BULLETIN

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Genomic basis for coral resilience to climate change

(2013) Daniel J. Barshis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Animals in a bacterial world, a new imperative for the life sciences

(2013) Margaret McFall-Ngai et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

DNA barcoding reveals the coral “laboratory-rat”, Stylophora pistillata encompasses multiple identities

(2013) Shashank Keshavmurthy et al.   Scientific Reports

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Contrasting Patterns of Coral Bleaching Susceptibility in 2010 Suggest an Adaptive Response to Thermal Stress

(2012) James R. Guest et al.   PLoS One

Symbiodinium Transcriptomes: Genome Insights into the Dinoflagellate Symbionts of Reef-Building Corals

(2012) Till Bayer et al.   PLoS One

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Transcriptomic responses to heat stress and bleaching in the elkhorn coral Acropora palmata

(2009) MK DeSalvo et al.   MARINE ECOLOGY PROGRESS SERIES

adegenet: a R package for the multivariate analysis of genetic markers

(2008) Thibaut Jombart   BIOINFORMATICS

Differential gene expression during thermal stress and bleaching in the Caribbean coralMontastraea faveolata

(2008) M. K. DESALVO et al.   MOLECULAR ECOLOGY

Comparative Analysis of Human Gut Microbiota by Barcoded Pyrosequencing

(2008) Anders F. Andersson et al.   PLoS One