Unlocking the phylogenetic diversity, primary habitats, and abundances of free‐living Symbiodiniaceae on a coral reef

Description of Freudenthalidium gen. nov. and Halluxium gen. nov. to Formally Recognize Clades Fr3 and H as Genera in the Family Symbiodiniaceae (Dinophyceae) 1

(2020) Matthew R. Nitschke et al.   JOURNAL OF PHYCOLOGY

Chronic disturbance modulates symbiont (Symbiodiniaceae) beta diversity on a coral reef

(2020) Danielle C. Claar et al.   Scientific Reports

Genome Size, rDNA Copy, and qPCR Assays for Symbiodiniaceae

(2020) Osama S. Saad et al.   Frontiers in Microbiology

Cladocopium infistulum sp. nov. (Dinophyceae), a thermally tolerant dinoflagellate symbiotic with giant clams from the western Pacific Ocean

(2020) Sung Yeon Lee et al.   PHYCOLOGIA

Coral microbiome diversity reflects mass coral bleaching susceptibility during the 2016 El Niño heat wave

(2019) Stephanie G. Gardner et al.   Ecology and Evolution

SymPortal: a novel analytical framework and platform for coral algal symbiont next-generation sequencing ITS2 profiling

(2019) B. C. C. Hume et al.   Molecular Ecology Resources

Recruit symbiosis establishment and Symbiodiniaceae composition influenced by adult corals and reef sediment

(2019) A. Ali et al.   CORAL REEFS

Abiotic and biotic interactions in the diffusive boundary layer of kelp blades create a potential refuge from ocean acidification

(2018) Fanny Noisette et al.   FUNCTIONAL ECOLOGY

Unexpected mixed-mode transmission and moderate genetic regulation of Symbiodinium communities in a brooding coral

(2018) Kate M. Quigley et al.   HEREDITY

Cell Cycle Dynamics of Cultured Coral Endosymbiotic Microalgae (Symbiodinium ) Across Different Types (Species) Under Alternate Light and Temperature Conditions

(2018) Lisa Fujise et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Rehabilitation of coral reefs through removal of macroalgae: State of knowledge and considerations for management and implementation

(2018) Daniela M. Ceccarelli et al.   RESTORATION ECOLOGY

An improved primer set and amplification protocol with increased specificity and sensitivity targeting the Symbiodinium ITS2 region

(2018) Benjamin C.C. Hume et al.   PeerJ

Systematic Revision of Symbiodiniaceae Highlights the Antiquity and Diversity of Coral Endosymbionts

(2018) Todd C. LaJeunesse et al.   CURRENT BIOLOGY

Biogeography and molecular diversity of coral symbionts in the genus Symbiodinium around the Arabian Peninsula

(2017) Maren Ziegler et al.   JOURNAL OF BIOGEOGRAPHY

Sibling species of mutualistic Symbiodinium clade G from bioeroding sponges in the western Pacific and western Atlantic oceans

(2017) Blake D. Ramsby et al.   JOURNAL OF PHYCOLOGY

Optimal nutrient exchange and immune responses operate in partner specificity in the cnidarian-dinoflagellate symbiosis

(2017) Jennifer L. Matthews et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Exploring the Symbiodinium rare biosphere provides evidence for symbiont switching in reef-building corals

(2016) Nadine M Boulotte et al.   ISME Journal

Most Low-Abundance “Background” Symbiodinium spp. Are Transitory and Have Minimal Functional Significance for Symbiotic Corals

(2016) Moo Joon Lee et al.   MICROBIAL ECOLOGY

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

The Coral Trait Database, a curated database of trait information for coral species from the global oceans

(2016) Joshua S. Madin et al.   Scientific Data

Horizontal transmission of Symbiodinium cells between adult and juvenile corals is aided by benthic sediment

(2015) Matthew R. Nitschke et al.   CORAL REEFS

Genetic diversity of free-living Symbiodinium in the Caribbean: the importance of habitats and seasons

(2015) Camila Granados-Cifuentes et al.   CORAL REEFS

Metabolite profiling of symbiont and host during thermal stress and bleaching in a model cnidarian–dinoflagellate symbiosis

(2015) Katie E. Hillyer et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Microsensor studies onPadinafrom a natural CO2seep: implications of morphology on acclimation to low pH

(2015) Laurie C. Hofmann et al.   JOURNAL OF PHYCOLOGY

ITS2 Database V: Twice as Much: Table 1.

(2015) Markus J. Ankenbrand et al.   MOLECULAR BIOLOGY AND EVOLUTION

Functional diversity of photobiological traits within the genusSymbiodiniumappears to be governed by the interaction of cell size with cladal designation

(2015) David J. Suggett et al.   NEW PHYTOLOGIST

Symbiodinium identity alters the temperature-dependent settlement behaviour of Acropora millepora coral larvae before the onset of symbiosis

(2015) N. S. Winkler et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Variability of Symbiodinium Communities in Waters, Sediments, and Corals of Thermally Distinct Reef Pools in American Samoa

(2015) Ross Cunning et al.   PLoS One

The effect of elevated temperature and substrate on free-living Symbiodinium cultures

(2014) M. R. Nitschke et al.   CORAL REEFS

The cumulative impact of annual coral bleaching can turn some coral species winners into losers

(2014) Andréa G. Grottoli et al.   GLOBAL CHANGE BIOLOGY

ExploringSymbiodiniumdiversity and host specificity inAcroporacorals from geographical extremes of Western Australia with 454 amplicon pyrosequencing

(2014) L. Thomas et al.   MOLECULAR ECOLOGY

Ecologically differentiated stress-tolerant endosymbionts in the dinoflagellate genusSymbiodinium(Dinophyceae) Clade D are different species

(2014) Todd C. LaJeunesse et al.   PHYCOLOGIA

Establishment of Coral–Algal Symbiosis Requires Attraction and Selection

(2014) Hiroshi Yamashita et al.   PLoS One

Cobgene pyrosequencing enables characterization of benthic dinoflagellate diversity and biogeography

(2013) Gurjeet S. Kohli et al.   ENVIRONMENTAL MICROBIOLOGY

HOST-SPECIALIST LINEAGES DOMINATE THE ADAPTIVE RADIATION OF REEF CORAL ENDOSYMBIONTS

(2013) Daniel J. Thornhill et al.   EVOLUTION

Genetics and Morphology Characterize the DinoflagellateSymbiodinium voratum, n. sp., (Dinophyceae) as the Sole Representative ofSymbiodiniumClade E

(2013) Hae Jin Jeong et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Symbiodiniumdiversity withinAcropora muricataand the surrounding environment

(2013) Michael J. Sweet   Marine Ecology-An Evolutionary Perspective

Multiple Symbiont Acquisition Strategies as an Adaptive Mechanism in the Coral Stylophora pistillata

(2013) Kristen A. Byler et al.   PLoS One

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Long-Range Dispersal and High-Latitude Environments Influence the Population Structure of a “Stress-Tolerant” Dinoflagellate Endosymbiont

(2013) D. Tye Pettay et al.   PLoS One

The promiscuous larvae: flexibility in the establishment of symbiosis in corals

(2012) V. R. Cumbo et al.   CORAL REEFS

Acropora recruits harbor “rare” Symbiodinium in the environmental pool

(2012) H. Yamashita et al.   CORAL REEFS

Cultivating endosymbionts — Host environmental mimics support the survival of Symbiodinium C15 ex hospite

(2012) Thomas Krueger et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Genetic identity of free-livingSymbiodiniumobtained over a broad latitudinal range in the Japanese coast

(2012) Hiroshi Yamashita et al.   PHYCOLOGICAL RESEARCH

Dispersal of Symbiodinium by the stoplight parrotfish Sparisoma viride

(2011) C. Castro-Sanguino et al.   Biology Letters

The effect of temperature stress on coral–Symbiodinium associations containing distinct symbiont types

(2011) P. L. Fisher et al.   CORAL REEFS

Genetic diversity of free-living Symbiodinium in surface water and sediment of Hawai‘i and Florida

(2011) M. Takabayashi et al.   CORAL REEFS

Coral thermal tolerance shaped by local adaptation of photosymbionts

(2011) E. J. Howells et al.   Nature Climate Change

Abundance of epiphytic dinoflagellates from coastal waters off Jeju Island, Korea During Autumn 2009

(2011) Hyung Seop Kim et al.   Ocean Science Journal

phangorn: phylogenetic analysis in R

(2010) Klaus Peter Schliep   BIOINFORMATICS

Presence of Symbiodinium spp. in macroalgal microhabitats from the southern Great Barrier Reef

(2010) D. E. Venera-Ponton et al.   CORAL REEFS

Do corals select zooxanthellae by alternative discharge?

(2010) Hiroshi Yamashita et al.   MARINE BIOLOGY

Photosystem II breakdown induced by reactive oxygen species in freshly-isolated Symbiodinium from Montipora (Scleractinia; Acroporidae)

(2010) JT Wang et al.   MARINE ECOLOGY PROGRESS SERIES

Environmental Barcoding Reveals Massive Dinoflagellate Diversity in Marine Environments

(2010) Rowena F. Stern et al.   PLoS One

Systematic and Biogeographical Patterns in the Reproductive Biology of Scleractinian Corals

(2009) Andrew H. Baird et al.   Annual Review of Ecology Evolution and Systematics

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Stability of coral–endosymbiont associations during and after a thermal stress event in the southern Great Barrier Reef

(2009) M. Stat et al.   CORAL REEFS

Specificity in communities of Symbiodinium in corals from Johnston Atoll

(2009) M Stat et al.   MARINE ECOLOGY PROGRESS SERIES

Cohesive molecular genetic data delineate species diversity in the dinoflagellate genusSymbiodinium

(2009) E. M. SAMPAYO et al.   MOLECULAR ECOLOGY

Highly infectious symbiont dominates initial uptake in coral juveniles

(2009) DAVID ABREGO et al.   MOLECULAR ECOLOGY

Outbreak and persistence of opportunistic symbiotic dinoflagellates during the 2005 Caribbean mass coral 'bleaching' event

(2009) T. C. LaJeunesse et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Do introduced endosymbiotic dinoflagellates ‘take’ to new hosts?

(2008) Todd C. LaJeunesse et al.   BIOLOGICAL INVASIONS

Symbiont acquisition strategy drives host–symbiont associations in the southern Great Barrier Reef

(2008) M. Stat et al.   CORAL REEFS

Methods for sampling free-living Symbiodinium (zooxanthellae) and their distribution and abundance at Lizard Island (Great Barrier Reef)

(2008) Raechel A. Littman et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Phylogenetic analyses of potentially free-living Symbiodinium spp. isolated from coral reef sand in Okinawa, Japan

(2008) Mamiko Hirose et al.   MARINE BIOLOGY

Exposure to sediment enhances primary acquisition of Symbiodinium by asymbiotic coral larvae

(2008) LM Adams et al.   MARINE ECOLOGY PROGRESS SERIES

Macroalgal-Associated Dinoflagellates Belonging to the Genus Symbiodinium in Caribbean Reefs

(2008) Isabel Porto et al.   PLoS One

A community change in the algal endosymbionts of a scleractinian coral following a natural bleaching event: field evidence of acclimatization

(2008) A.M Jones et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Seasonal variation in the photo-physiology of homogeneous and heterogeneous Symbiodinium consortia in two scleractinian corals

(2007) KE Ulstrup et al.   MARINE ECOLOGY PROGRESS SERIES