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Title
Metabolic Engineering: Methodologies and Applications
Authors
Keywords
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Journal
Chemical Reviews
Volume -, Issue -, Pages -
Publisher
American Chemical Society (ACS)
Online
2022-12-31
DOI
10.1021/acs.chemrev.2c00403
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- (2018) D. Russ et al. Nature Microbiology
- Synthetic Consortium of Escherichia coli for n-Butanol Production by Fermentation of the Glucose–Xylose Mixture
- (2017) Mukesh Saini et al. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY
- Degradation and metabolism of synthetic plastics and associated products by Pseudomonas sp.: capabilities and challenges
- (2017) R.A. Wilkes et al. JOURNAL OF APPLIED MICROBIOLOGY
- Engineering efficient production of itaconic acid from diverse substrates in Escherichia coli
- (2017) Peiching Chang et al. JOURNAL OF BIOTECHNOLOGY
- Multiplexed site-specific genome engineering for overproducing bioactive secondary metabolites in actinomycetes
- (2017) Lei Li et al. METABOLIC ENGINEERING
- Combining Gal4p-mediated expression enhancement and directed evolution of isoprene synthase to improve isoprene production in Saccharomyces cerevisiae
- (2017) Fan Wang et al. METABOLIC ENGINEERING
- Comparison of the metabolic response to over-production of p -coumaric acid in two yeast strains
- (2017) Angelica Rodriguez et al. METABOLIC ENGINEERING
- Engineering biological systems using automated biofoundries
- (2017) Ran Chao et al. METABOLIC ENGINEERING
- CRISPRi-mediated metabolic engineering of E. coli for O-methylated anthocyanin production
- (2017) Brady F. Cress et al. Microbial Cell Factories
- Engineering Halomonas species TD01 for enhanced polyhydroxyalkanoates synthesis via CRISPRi
- (2017) Wei Tao et al. Microbial Cell Factories
- Harnessing yeast organelles for metabolic engineering
- (2017) Sarah K Hammer et al. Nature Chemical Biology
- An artificial transport metabolon facilitates improved substrate utilization in yeast
- (2017) Thomas Thomik et al. Nature Chemical Biology
- Experimental evolution reveals an effective avenue to release catabolite repression via mutations in XylR
- (2017) Christian Sievert et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Industrial biomanufacturing: The future of chemical production
- (2017) James M. Clomburg et al. SCIENCE
- Combinatorial metabolic engineering using an orthogonal tri-functional CRISPR system
- (2017) Jiazhang Lian et al. Nature Communications
- Automated multiplex genome-scale engineering in yeast
- (2017) Tong Si et al. Nature Communications
- Saturated mutagenesis of ketoisovalerate decarboxylase V461 enabled specific synthesis of 1-pentanol via the ketoacid elongation cycle
- (2017) Grey S. Chen et al. Scientific Reports
- Fully Automated One-Step Synthesis of Single-Transcript TALEN Pairs Using a Biological Foundry
- (2017) Ran Chao et al. ACS Synthetic Biology
- Combining CRISPR and CRISPRi Systems for Metabolic Engineering of E. coli and 1,4-BDO Biosynthesis
- (2017) Meng-Ying Wu et al. ACS Synthetic Biology
- SteadyCom: Predicting microbial abundances while ensuring community stability
- (2017) Siu Hung Joshua Chan et al. PLoS Computational Biology
- Combining inferred regulatory and reconstructed metabolic networks enhances phenotype prediction in yeast
- (2017) Zhuo Wang et al. PLoS Computational Biology
- Engineering Robustness of Microbial Cell Factories
- (2017) Zhiwei Gong et al. Biotechnology Journal
- Design, Optimization and Application of Small Molecule Biosensor in Metabolic Engineering
- (2017) Yang Liu et al. Frontiers in Microbiology
- Gene Expression Knockdown by Modulating Synthetic Small RNA Expression in Escherichia coli
- (2017) Minho Noh et al. Cell Systems
- Construction of plasmids with tunable copy numbers in Saccharomyces cerevisiae and their applications in pathway optimization and multiplex genome integration
- (2016) Jiazhang Lian et al. BIOTECHNOLOGY AND BIOENGINEERING
- Application of an oxygen-inducible nar promoter system in metabolic engineering for production of biochemicals in Escherichia coli
- (2016) Hee J. Hwang et al. BIOTECHNOLOGY AND BIOENGINEERING
- Toward glycerol biorefinery: metabolic engineering for the production of biofuels and chemicals from glycerol
- (2016) Zhen Chen et al. Biotechnology for Biofuels
- Robust succinic acid production from crude glycerol using engineered Yarrowia lipolytica
- (2016) Cuijuan Gao et al. Biotechnology for Biofuels
- Sugar Synthesis from CO2 in Escherichia coli
- (2016) Niv Antonovsky et al. CELL
- Development of a commercial scale process for production of 1,4-butanediol from sugar
- (2016) Anthony Burgard et al. CURRENT OPINION IN BIOTECHNOLOGY
- Biofuel metabolic engineering with biosensors
- (2016) Stacy-Anne Morgan et al. CURRENT OPINION IN CHEMICAL BIOLOGY
- Synthetic biology and regulatory networks: where metabolic systems biology meets control engineering
- (2016) Fei He et al. Journal of the Royal Society Interface
- Identification of metabolic engineering targets for the enhancement of 1,4-butanediol production in recombinant E. coli using large-scale kinetic models
- (2016) Stefano Andreozzi et al. METABOLIC ENGINEERING
- Production of 2-methyl-1-butanol and 3-methyl-1-butanol in engineered Corynebacterium glutamicum
- (2016) Michael Vogt et al. METABOLIC ENGINEERING
- A highly efficient single-step, markerless strategy for multi-copy chromosomal integration of large biochemical pathways in Saccharomyces cerevisiae
- (2016) Shuobo Shi et al. METABOLIC ENGINEERING
- Model-based metabolic engineering enables high yield itaconic acid production by Escherichia coli
- (2016) Björn-Johannes Harder et al. METABOLIC ENGINEERING
- Engineering Escherichia coli for production of 4-hydroxymandelic acid using glucose–xylose mixture
- (2016) Fei-Fei Li et al. Microbial Cell Factories
- Heterologous production of raspberry ketone in the wine yeast Saccharomyces cerevisiae via pathway engineering and synthetic enzyme fusion
- (2016) Danna Lee et al. Microbial Cell Factories
- Compartmentalized Metabolic Engineering for Artemisinin Biosynthesis and Effective Malaria Treatment by Oral Delivery of Plant Cells
- (2016) Karan Malhotra et al. Molecular Plant
- EasyCloneMulti: A Set of Vectors for Simultaneous and Multiple Genomic Integrations in Saccharomyces cerevisiae
- (2016) Jérôme Maury et al. PLoS One
- Dual regulation of cytoplasmic and mitochondrial acetyl-CoA utilization for improved isoprene production in Saccharomyces cerevisiae
- (2016) Xiaomei Lv et al. Nature Communications
- A genome-scale Escherichia coli kinetic metabolic model k-ecoli457 satisfying flux data for multiple mutant strains
- (2016) Ali Khodayari et al. Nature Communications
- Production of fatty acid-derived oleochemicals and biofuels by synthetic yeast cell factories
- (2016) Yongjin J. Zhou et al. Nature Communications
- Metabolic Engineering of Escherichia coli for the Production of 3-Hydroxypropionic Acid and Malonic Acid through β-Alanine Route
- (2016) Chan Woo Song et al. ACS Synthetic Biology
- A General Tool for Engineering the NAD/NADP Cofactor Preference of Oxidoreductases
- (2016) Jackson K. B. Cahn et al. ACS Synthetic Biology
- Functional Reconstitution of a Pyruvate Dehydrogenase in the Cytosol of Saccharomyces cerevisiae through Lipoylation Machinery Engineering
- (2016) Jiazhang Lian et al. ACS Synthetic Biology
- Intelligent Microbial Heat-Regulating Engine (IMHeRE) for Improved Thermo-Robustness and Efficiency of Bioconversion
- (2016) Haiyang Jia et al. ACS Synthetic Biology
- Quantitative Trait Loci (QTL)-Guided Metabolic Engineering of a Complex Trait
- (2016) Matthew J. Maurer et al. ACS Synthetic Biology
- Synthetic RNA Polymerase III Promoters Facilitate High-Efficiency CRISPR–Cas9-Mediated Genome Editing in Yarrowia lipolytica
- (2016) Cory M. Schwartz et al. ACS Synthetic Biology
- Improving Metabolic Pathway Efficiency by Statistical Model-Based Multivariate Regulatory Metabolic Engineering
- (2016) Peng Xu et al. ACS Synthetic Biology
- Flux Control at the Malonyl-CoA Node through Hierarchical Dynamic Pathway Regulation in Saccharomyces cerevisiae
- (2016) Florian David et al. ACS Synthetic Biology
- Controlling Citrate Synthase Expression by CRISPR/Cas9 Genome Editing for n-Butanol Production in Escherichia coli
- (2016) Min-Ji Heo et al. ACS Synthetic Biology
- Designing, construction and characterization of genetically encoded FRET-based nanosensor for real time monitoring of lysine flux in living cells
- (2016) Seema Ameen et al. JOURNAL OF NANOBIOTECHNOLOGY
- End-to-end automated microfluidic platform for synthetic biology: from design to functional analysis
- (2016) Gregory Linshiz et al. Journal of Biological Engineering
- Biosensors Used for Quantification of Nitrates in Plants
- (2016) Romero-Galindo Raul et al. Journal of Sensors
- Efficient and selective degradation of polyethylenes into liquid fuels and waxes under mild conditions
- (2016) X. Jia et al. Science Advances
- A genetically encoded Förster resonance energy transfer sensor for monitoring in vivo trehalose-6-phosphate dynamics
- (2015) Estevão A. Peroza et al. ANALYTICAL BIOCHEMISTRY
- Efficient L-Alanine Production by a Thermo-Regulated Switch in Escherichia coli
- (2015) Li Zhou et al. APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY
- How to measure metabolic fluxes: a taxonomic guide for 13 C fluxomics
- (2015) Sebastian Niedenführ et al. CURRENT OPINION IN BIOTECHNOLOGY
- Metabolic engineering of Escherichia coli using CRISPR–Cas9 meditated genome editing
- (2015) Yifan Li et al. METABOLIC ENGINEERING
- Sequential control of biosynthetic pathways for balanced utilization of metabolic intermediates in Saccharomyces cerevisiae
- (2015) Wenping Xie et al. METABOLIC ENGINEERING
- Applications and advances of metabolite biosensors for metabolic engineering
- (2015) Di Liu et al. METABOLIC ENGINEERING
- 13C metabolic flux analysis at a genome-scale
- (2015) Saratram Gopalakrishnan et al. METABOLIC ENGINEERING
- Multiplex metabolic pathway engineering using CRISPR/Cas9 in Saccharomyces cerevisiae
- (2015) Tadas Jakočiūnas et al. METABOLIC ENGINEERING
- Principal component analysis of proteomics (PCAP) as a tool to direct metabolic engineering
- (2015) Jorge Alonso-Gutierrez et al. METABOLIC ENGINEERING
- Rational design of a synthetic Entner–Doudoroff pathway for improved and controllable NADPH regeneration
- (2015) Chiam Yu Ng et al. METABOLIC ENGINEERING
- Metabolic engineering of Yarrowia lipolytica for itaconic acid production
- (2015) John Blazeck et al. METABOLIC ENGINEERING
- MetDFBA: incorporating time-resolved metabolomics measurements into dynamic flux balance analysis
- (2015) A. Marcel Willemsen et al. Molecular BioSystems
- Complete biosynthesis of opioids in yeast
- (2015) S. Galanie et al. SCIENCE
- Metabolic engineering of cyanobacteria for the synthesis of commodity products
- (2015) S. Andreas Angermayr et al. TRENDS IN BIOTECHNOLOGY
- The development and characterization of synthetic minimal yeast promoters
- (2015) Heidi Redden et al. Nature Communications
- Manipulating multi-system of NADPH regulation in Escherichia coli for enhanced S-adenosylmethionine production
- (2015) Yawei Chen et al. RSC Advances
- Producing human ceramide-NS by metabolic engineering using yeast Saccharomyces cerevisiae
- (2015) Suguru Murakami et al. Scientific Reports
- Genetically assembled fluorescent biosensor for in situ detection of bio-synthesized alkanes
- (2015) Wei Wu et al. Scientific Reports
- Metabolic engineering of Escherichia coli for the production of 1,3-diaminopropane, a three carbon diamine
- (2015) Tong Un Chae et al. Scientific Reports
- A Method to Constrain Genome-Scale Models with 13C Labeling Data
- (2015) Héctor García Martín et al. PLoS Computational Biology
- Next-generation sequencing approach for connecting secondary metabolites to biosynthetic gene clusters in fungi
- (2015) Ralph A. Cacho et al. Frontiers in Microbiology
- Ustilago maydisproduces itaconic acid via the unusual intermediatetrans-aconitate
- (2015) Elena Geiser et al. Microbial Biotechnology
- A rapid and reliable strategy for chromosomal integration of gene(s) with multiple copies
- (2015) Pengfei Gu et al. Scientific Reports
- Isopropanol production with engineered Cupriavidus necator as bioproduction platform
- (2014) Estelle Grousseau et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- Engineering of a butyraldehyde dehydrogenase ofClostridium saccharoperbutylacetonicumto fit an engineered 1,4-butanediol pathway inEscherichia coli
- (2014) Hee Jin Hwang et al. BIOTECHNOLOGY AND BIOENGINEERING
- Advances in metabolic engineering of yeastSaccharomyces cerevisiaefor production of chemicals
- (2014) Irina Borodina et al. Biotechnology Journal
- Deletion of d-ribulose-5-phosphate 3-epimerase (RPE1) induces simultaneous utilization of xylose and glucose in xylose-utilizing Saccharomyces cerevisiae
- (2014) Ming-Hua Shen et al. BIOTECHNOLOGY LETTERS
- Molecular characterization of KU70 and KU80 homologues and exploitation of a KU70-deficient mutant for improving gene deletion frequency in Rhodosporidium toruloides
- (2014) Chong Mei Koh et al. BMC MICROBIOLOGY
- Optogenetic approaches to cell migration and beyond
- (2014) Matthew Weitzman et al. CURRENT OPINION IN CELL BIOLOGY
- A system for multilocus chromosomal integration and transformation-free selection marker rescue
- (2014) Michael S. Siddiqui et al. FEMS YEAST RESEARCH
- Construction of a metabolome library for transcription factor-related single gene mutants of Saccharomyces cerevisiae
- (2014) Zanariah Hashim et al. JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES
- Metabolic flux redirection from a central metabolic pathway toward a synthetic pathway using a metabolic toggle switch
- (2014) Yuki Soma et al. METABOLIC ENGINEERING
- Mass Spectrometry-based Workflow for Accurate Quantification ofEscherichia coliEnzymes: How Proteomics Can Play a Key Role in Metabolic Engineering
- (2014) Mathieu Trauchessec et al. MOLECULAR & CELLULAR PROTEOMICS
- Microfluidic high-throughput culturing of single cells for selection based on extracellular metabolite production or consumption
- (2014) Benjamin L Wang et al. NATURE BIOTECHNOLOGY
- A microbial biomanufacturing platform for natural and semisynthetic opioids
- (2014) Kate Thodey et al. Nature Chemical Biology
- Constraint-based models predict metabolic and associated cellular functions
- (2014) Aarash Bordbar et al. NATURE REVIEWS GENETICS
- Semi-synthetic artemisinin: a model for the use of synthetic biology in pharmaceutical development
- (2014) Chris J. Paddon et al. NATURE REVIEWS MICROBIOLOGY
- In vivoco-localization of enzymes on RNA scaffolds increases metabolic production in a geometrically dependent manner
- (2014) Gairik Sachdeva et al. NUCLEIC ACIDS RESEARCH
- Engineering of yeast hexose transporters to transport D-xylose without inhibition by D-glucose
- (2014) A. Farwick et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Altered sterol composition renders yeast thermotolerant
- (2014) L. Caspeta et al. SCIENCE
- Engineering alcohol tolerance in yeast
- (2014) F. H. Lam et al. SCIENCE
- Stereospecific Microbial Conversion of Lactic Acid into 1,2-Propanediol
- (2014) Wei Niu et al. ACS Synthetic Biology
- RNAi-Assisted Genome Evolution in Saccharomyces cerevisiae for Complex Phenotype Engineering
- (2014) Tong Si et al. ACS Synthetic Biology
- Homology-Integrated CRISPR–Cas (HI-CRISPR) System for One-Step Multigene Disruption in Saccharomyces cerevisiae
- (2014) Zehua Bao et al. ACS Synthetic Biology
- d-OptCom: Dynamic Multi-level and Multi-objective Metabolic Modeling of Microbial Communities
- (2014) Ali R. Zomorrodi et al. ACS Synthetic Biology
- k-OptForce: Integrating Kinetics with Flux Balance Analysis for Strain Design
- (2014) Anupam Chowdhury et al. PLoS Computational Biology
- Engineering of Ralstonia eutropha H16 for Autotrophic and Heterotrophic Production of Methyl Ketones
- (2013) J. Muller et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Flux analysis and metabolomics for systematic metabolic engineering of microorganisms
- (2013) Yoshihiro Toya et al. BIOTECHNOLOGY ADVANCES
- Directed evolution of a highly efficient cellobiose utilizing pathway in an industrialSaccharomyces cerevisiaestrain
- (2013) Yongbo Yuan et al. BIOTECHNOLOGY AND BIOENGINEERING
- Integrated OMICS guided engineering of biofuel butanol-tolerance in photosynthetic Synechocystis sp. PCC 6803
- (2013) Hongji Zhu et al. Biotechnology for Biofuels
- Bioconversion of lignocellulose: inhibitors and detoxification
- (2013) Leif J Jönsson et al. Biotechnology for Biofuels
- Towards kinetic modeling of genome-scale metabolic networks without sacrificing stoichiometric, thermodynamic and physiological constraints
- (2013) Anirikh Chakrabarti et al. Biotechnology Journal
- Repurposing CRISPR as an RNA-Guided Platform for Sequence-Specific Control of Gene Expression
- (2013) Lei S. Qi et al. CELL
- A Decade of Riboswitches
- (2013) Alexander Serganov et al. CELL
- Directed evolution of a cellobiose utilization pathway in Saccharomyces cerevisiae by simultaneously engineering multiple proteins
- (2013) Dawn T Eriksen et al. Microbial Cell Factories
- Increased isobutanol production in Saccharomyces cerevisiae by eliminating competing pathways and resolving cofactor imbalance
- (2013) Fumio Matsuda et al. Microbial Cell Factories
- High-level semi-synthetic production of the potent antimalarial artemisinin
- (2013) C. J. Paddon et al. NATURE
- Compartmentalization of metabolic pathways in yeast mitochondria improves the production of branched-chain alcohols
- (2013) José L Avalos et al. NATURE BIOTECHNOLOGY
- Metabolic engineering of Escherichia coli using synthetic small regulatory RNAs
- (2013) Dokyun Na et al. NATURE BIOTECHNOLOGY
- Production of omega-3 eicosapentaenoic acid by metabolic engineering of Yarrowia lipolytica
- (2013) Zhixiong Xue et al. NATURE BIOTECHNOLOGY
- Genome engineering in Saccharomyces cerevisiae using CRISPR-Cas systems
- (2013) James E. DiCarlo et al. NUCLEIC ACIDS RESEARCH
- Biofuels in the long-run global energy supply mix for transportation
- (2013) G. R. Timilsina PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES
- In Vivo Packaging of Triacylglycerols Enhances Arabidopsis Leaf Biomass and Energy Density
- (2013) S. Winichayakul et al. PLANT PHYSIOLOGY
- Metabolic modeling of species interaction in the human microbiome elucidates community-level assembly rules
- (2013) R. Levy et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Enhancing Tolerance to Short-Chain Alcohols by Engineering the Escherichia coli AcrB Efflux Pump to Secrete the Non-native Substrate n-Butanol
- (2013) Michael A. Fisher et al. ACS Synthetic Biology
- Cell-Free Metabolic Engineering: Production of Chemicals by Minimized Reaction Cascades
- (2012) Jan-Karl Guterl et al. ChemSusChem
- Evolution of an alkane-inducible biosensor for increased responsiveness to short-chain alkanes
- (2012) Ben Reed et al. JOURNAL OF BIOTECHNOLOGY
- Microbial production of indolylglucosinolate through engineering of a multi-gene pathway in a versatile yeast expression platform
- (2012) Michael Dalgaard Mikkelsen et al. METABOLIC ENGINEERING
- Genetically switched d-lactate production in Escherichia coli
- (2012) Li Zhou et al. METABOLIC ENGINEERING
- GroESL overexpression imparts Escherichia coli tolerance to i-, n-, and 2-butanol, 1,2,4-butanetriol and ethanol with complex and unpredictable patterns
- (2012) Kyle A. Zingaro et al. METABOLIC ENGINEERING
- Metabolic regulation analysis of wild-type and arcA mutant Escherichia coli under nitrate conditions using different levels of omics data
- (2012) Yoshihiro Toya et al. Molecular BioSystems
- Design of a dynamic sensor-regulator system for production of chemicals and fuels derived from fatty acids
- (2012) Fuzhong Zhang et al. NATURE BIOTECHNOLOGY
- Systems metabolic engineering of microorganisms for natural and non-natural chemicals
- (2012) Jeong Wook Lee et al. Nature Chemical Biology
- Genome-scale promoter engineering by coselection MAGE
- (2012) Harris H Wang et al. NATURE METHODS
- Customized optimization of metabolic pathways by combinatorial transcriptional engineering
- (2012) Jing Du et al. NUCLEIC ACIDS RESEARCH
- Production of amorphadiene in yeast, and its conversion to dihydroartemisinic acid, precursor to the antimalarial agent artemisinin
- (2012) P. J. Westfall et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Enhanced Butanol Production Obtained by Reinforcing the Direct Butanol-Forming Route in Clostridium acetobutylicum
- (2012) Y.-S. Jang et al. mBio
- OptCom: A Multi-Level Optimization Framework for the Metabolic Modeling and Analysis of Microbial Communities
- (2012) Ali R. Zomorrodi et al. PLoS Computational Biology
- High-Yield Resveratrol Production in Engineered Escherichia coli
- (2011) Chin Giaw Lim et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Tuning Gene Expression in Yarrowia lipolytica by a Hybrid Promoter Approach
- (2011) John Blazeck et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Site-specific genome integration in alphaproteobacteria mediated by TG1 integrase
- (2011) Kentaro Morita et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- High-flux isobutanol production using engineered Escherichia coli: a bioreactor study with in situ product removal
- (2011) Antonino Baez et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- Metabolic engineering of monoterpene synthesis in yeast
- (2011) Marc J. C. Fischer et al. BIOTECHNOLOGY AND BIOENGINEERING
- An evolutionary strategy for isobutanol production strain development in Escherichia coli
- (2011) Kevin M. Smith et al. METABOLIC ENGINEERING
- Metabolic engineering of Escherichia coli for α-farnesene production
- (2011) Chonglong Wang et al. METABOLIC ENGINEERING
- From zero to hero—Design-based systems metabolic engineering of Corynebacterium glutamicum for l-lysine production
- (2011) Judith Becker et al. METABOLIC ENGINEERING
- Engineered ketol-acid reductoisomerase and alcohol dehydrogenase enable anaerobic 2-methylpropan-1-ol production at theoretical yield in Escherichia coli
- (2011) Sabine Bastian et al. METABOLIC ENGINEERING
- Development of an anhydrotetracycline-inducible gene expression system for solvent-producing Clostridium acetobutylicum: A useful tool for strain engineering
- (2011) Hongjun Dong et al. METABOLIC ENGINEERING
- Engineering microbial biofuel tolerance and export using efflux pumps
- (2011) M. J. Dunlop et al. Molecular Systems Biology
- DNA-guided assembly of biosynthetic pathways promotes improved catalytic efficiency
- (2011) Robert J. Conrado et al. NUCLEIC ACIDS RESEARCH
- Fermentation of Glycerol to Succinate by Metabolically Engineered Strains of Escherichia coli
- (2010) X. Zhang et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Machine learning methods for metabolic pathway prediction
- (2010) Joseph M Dale et al. BMC BIOINFORMATICS
- Engineering Static and Dynamic Control of Synthetic Pathways
- (2010) William J. Holtz et al. CELL
- Improvement of isopropanol production by metabolically engineered Escherichia coli using gas stripping
- (2010) Kentaro Inokuma et al. JOURNAL OF BIOSCIENCE AND BIOENGINEERING
- Metabolic engineering for the production of shikimic acid in an evolved Escherichia coli strain lacking the phosphoenolpyruvate: carbohydrate phosphotransferase system
- (2010) Adelfo Escalante et al. Microbial Cell Factories
- Discovery and characterization of novel d-xylose-specific transporters from Neurospora crassa and Pichia stipitis
- (2010) Jing Du et al. Molecular BioSystems
- Overcoming glucose repression in mixed sugar fermentation by co-expressing a cellobiose transporter and a β-glucosidase in Saccharomyces cerevisiae
- (2010) Sijin Li et al. Molecular BioSystems
- Evolution, genomic analysis, and reconstruction of isobutanol tolerance in Escherichia coli
- (2010) Shota Atsumi et al. Molecular Systems Biology
- What is flux balance analysis?
- (2010) Jeffrey D Orth et al. NATURE BIOTECHNOLOGY
- Combining metabolic and protein engineering of a terpenoid biosynthetic pathway for overproduction and selectivity control
- (2010) E. Leonard et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Isoprenoid Pathway Optimization for Taxol Precursor Overproduction in Escherichia coli
- (2010) P. K. Ajikumar et al. SCIENCE
- High-Throughput Quantitative Metabolomics: Workflow for Cultivation, Quenching, and Analysis of Yeast in a Multiwell Format
- (2009) Jennifer Christina Ewald et al. ANALYTICAL CHEMISTRY
- Quantitative Evaluation of Intracellular Metabolite Extraction Techniques for Yeast Metabolomics
- (2009) André B. Canelas et al. ANALYTICAL CHEMISTRY
- Metabolic Engineering of Escherichia coli for Efficient Conversion of Glycerol to Ethanol
- (2009) C. T. Trinh et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Engineering the isobutanol biosynthetic pathway in Escherichia coli by comparison of three aldehyde reductase/alcohol dehydrogenase genes
- (2009) Shota Atsumi et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- Hydrogenated monoterpenes as diesel fuel additives
- (2009) Noah I. Tracy et al. FUEL
- A comparison of stress tolerance in YPD and industrial lignocellulose-based medium among industrial and laboratory yeast strains
- (2009) Eva Albers et al. JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY
- Programming cells by multiplex genome engineering and accelerated evolution
- (2009) Harris H. Wang et al. NATURE
- Synthetic protein scaffolds provide modular control over metabolic flux
- (2009) John E Dueber et al. NATURE BIOTECHNOLOGY
- Automated design of synthetic ribosome binding sites to control protein expression
- (2009) Howard M Salis et al. NATURE BIOTECHNOLOGY
- Directed Evolution of Methanococcus jannaschii Citramalate Synthase for Biosynthesis of 1-Propanol and 1-Butanol by Escherichia coli
- (2008) S. Atsumi et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Multiple gene-mediated NAD(P)H-dependent aldehyde reduction is a mechanism of in situ detoxification of furfural and 5-hydroxymethylfurfural by Saccharomyces cerevisiae
- (2008) Z. Lewis Liu et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- Ensemble Modeling of Metabolic Networks
- (2008) Linh M. Tran et al. BIOPHYSICAL JOURNAL
- Redirection of flux through the FPP branch-point inSaccharomyces cerevisiaeby down-regulating squalene synthase
- (2008) Eric M. Paradise et al. BIOTECHNOLOGY AND BIOENGINEERING
- Developing an industrial artemisinic acid fermentation process to support the cost-effective production of antimalarial artemisinin-based combination therapies
- (2008) Jacob R. Lenihan et al. BIOTECHNOLOGY PROGRESS
- Biochemical and Structural Insights into Bacterial Organelle Form and Biogenesis
- (2008) Joshua B. Parsons et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Metabolic engineering of Escherichia coli for 1-butanol and 1-propanol production via the keto-acid pathways
- (2008) C.R. Shen et al. METABOLIC ENGINEERING
- Non-fermentative pathways for synthesis of branched-chain higher alcohols as biofuels
- (2008) Shota Atsumi et al. NATURE
- DNA assembler, an in vivo genetic method for rapid construction of biochemical pathways
- (2008) Zengyi Shao et al. NUCLEIC ACIDS RESEARCH
- Metabolically engineeredEscherichia colifor efficient production of glycosylated natural products
- (2008) Salvador Peirú et al. Microbial Biotechnology
- Metabolic flux analysis and metabolic engineering of microorganisms
- (2007) Hyun Uk Kim et al. Molecular BioSystems
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