Pathway-based signature transcriptional profiles as tolerance phenotypes for the adapted industrial yeast Saccharomyces cerevisiae resistant to furfural and HMF

Protein expression analysis revealed a fine-tuned mechanism of in situ detoxification pathway for the tolerant industrial yeast Saccharomyces cerevisiae

(2019) Z. Lewis Liu et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Extensive post-transcriptional buffering of gene expression in the response to severe oxidative stress in baker’s yeast

(2019) William R. Blevins et al.   Scientific Reports

Understanding the tolerance of the industrial yeast Saccharomyces cerevisiae against a major class of toxic aldehyde compounds

(2018) ZongLin Lewis Liu   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Tolerant industrial yeast Saccharomyces cerevisiae posses a more robust cell wall integrity signaling pathway against 2-furaldehyde and 5-(hydroxymethyl)-2-furaldehyde

(2018) Z. Lewis Liu et al.   JOURNAL OF BIOTECHNOLOGY

Adaptation of S. cerevisiae to Fermented Food Environments Reveals Remarkable Genome Plasticity and the Footprints of Domestication

(2018) Jean-Luc Legras et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genome evolution across 1,011 Saccharomyces cerevisiae isolates

(2018) Jackson Peter et al.   NATURE

Extensive Copy Number Variation in Fermentation-Related Genes Among Saccharomyces cerevisiae Wine Strains

(2017) Jacob Steenwyk et al.   G3-Genes Genomes Genetics

Phenotypic characterization and comparative transcriptomics of evolved Saccharomyces cerevisiae strains with improved tolerance to lignocellulosic derived inhibitors

(2016) Olivia A. Thompson et al.   Biotechnology for Biofuels

Cross-stress resistance in Saccharomyces cerevisiae yeast—new insight into an old phenomenon

(2016) Agata Święciło   CELL STRESS & CHAPERONES

Intracellular metabolite profiling ofSaccharomyces cerevisiaeevolved under furfural

(2016) Young Hoon Jung et al.   Microbial Biotechnology

Technical Assessment of Cellulosic Ethanol Production Using β-Glucosidase Producing Yeast Clavispora NRRL Y-50464

(2015) Z. Lewis Liu et al.   BioEnergy Research

Cell periphery-related proteins as major genomic targets behind the adaptive evolution of an industrial Saccharomyces cerevisiae strain to combined heat and hydrolysate stress

(2015) Valeria Wallace-Salinas et al.   BMC GENOMICS

Environmental and ecological interactions

(2015) Erika Kothe   JOURNAL OF BASIC MICROBIOLOGY

Trans-sulfuration Pathway Seleno-amino Acids Are Mediators of Selenomethionine Toxicity inSaccharomyces cerevisiae*

(2015) Myriam Lazard et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

ChiNet uncovers rewired transcription subnetworks in tolerant yeast for advanced biofuels conversion

(2015) Yang Zhang et al.   NUCLEIC ACIDS RESEARCH

Genomic and transcriptome analyses reveal that MAPK- and phosphatidylinositol-signaling pathways mediate tolerance to 5-hydroxymethyl-2-furaldehyde for industrial yeast Saccharomyces cerevisiae

(2014) Qian Zhou et al.   Scientific Reports

The influence of HMF and furfural on redox-balance and energy-state of xylose-utilizing Saccharomyces cerevisiae

(2013) Magnus Ask et al.   Biotechnology for Biofuels

Sulfur Amino Acids Regulate Translational Capacity and Metabolic Homeostasis through Modulation of tRNA Thiolation

(2013) Sunil Laxman et al.   CELL

Yeast metabolic and signaling genes are required for heat-shock survival and have little overlap with the heat-induced genes

(2013) P. A. Gibney et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Yeast ATP-Binding Cassette Transporters Conferring Multidrug Resistance

(2012) Rajendra Prasad et al.   Annual Review of Microbiology

Architecture and Biosynthesis of the Saccharomyces cerevisiae Cell Wall

(2012) P. Orlean   GENETICS

Integrated Phospholipidomics and Transcriptomics Analysis of Saccharomyces cerevisiae with Enhanced Tolerance to a Mixture of Acetic Acid, Furfural, and Phenol

(2012) Jie Yang et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Proteomic Research Reveals the Stress Response and Detoxification of Yeast to Combined Inhibitors

(2012) Ming-Zhu Ding et al.   PLoS One

Kinetic mechanism of an aldehyde reductase of Saccharomyces cerevisiae that relieves toxicity of furfural and 5-hydroxymethylfurfural

(2011) Douglas B. Jordan et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

Expression of aldehyde dehydrogenase 6 reduces inhibitory effect of furan derivatives on cell growth and ethanol production in Saccharomyces cerevisiae

(2011) Seong-Eon Park et al.   BIORESOURCE TECHNOLOGY

Engineered NADH-dependent GRE2 from Saccharomyces cerevisiae by directed enzyme evolution enhances HMF reduction using additional cofactor NADPH

(2011) Jaewoong Moon et al.   ENZYME AND MICROBIAL TECHNOLOGY

Overexpression of the yeast transcription activator Msn2 confers furfural resistance and increases the initial fermentation rate in ethanol production

(2011) Yu Sasano et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

Stereochemistry of Furfural Reduction by a Saccharomyces cerevisiae Aldehyde Reductase That Contributes to In Situ Furfural Detoxification

(2010) M. J. Bowman et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Furfural induces reactive oxygen species accumulation and cellular damage in Saccharomyces cerevisiae

(2010) Sandra A Allen et al.   Biotechnology for Biofuels

Comparative transcriptome profiling analyses during the lag phase uncover YAP1, PDR1, PDR3, RPN4, and HSF1 as key regulatory genes in genomic adaptation to the lignocellulose derived inhibitor HMF for Saccharomyces cerevisiae

(2010) Menggen Ma et al.   BMC GENOMICS

YEASTRACT: providing a programmatic access to curated transcriptional regulatory associations in Saccharomyces cerevisiae through a web services interface

(2010) D. Abdulrehman et al.   NUCLEIC ACIDS RESEARCH

Resistance of Saccharomyces cerevisiae to High Concentrations of Furfural Is Based on NADPH-Dependent Reduction by at Least Two Oxireductases

(2009) D. Heer et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Furfural Inhibits Growth by Limiting Sulfur Assimilation in Ethanologenic Escherichia coli Strain LY180

(2009) E. N. Miller et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Identification of Saccharomyces cerevisiae Genes Involved in the Resistance to Phenolic Fermentation Inhibitors

(2009) Linda Sundström et al.   APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY

Toxicity of Methanol and Formaldehyde Towards Saccharomyces cerevisiae as Assessed by DNA Microarray Analysis

(2009) Daisuke Yasokawa et al.   APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY

A novel NADPH-dependent aldehyde reductase gene from Saccharomyces cerevisiae NRRL Y-12632 involved in the detoxification of aldehyde inhibitors derived from lignocellulosic biomass conversion

(2009) Z. Lewis Liu et al.   GENE

Genome structure of a Saccharomyces cerevisiae strain widely used in bioethanol production

(2009) J. L. Argueso et al.   GENOME RESEARCH

Yeast Colony Survival Depends on Metabolic Adaptation and Cell Differentiation Rather Than on Stress Defense

(2009) Michal Čáp et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Evolutionarily engineered ethanologenic yeast detoxifies lignocellulosic biomass conversion inhibitors by reprogrammed pathways

(2009) Z. Lewis Liu et al.   MOLECULAR GENETICS AND GENOMICS

Overexpression of Saccharomyces cerevisiae transcription factor and multidrug resistance genes conveys enhanced resistance to lignocellulose-derived fermentation inhibitors

(2009) Björn Alriksson et al.   PROCESS BIOCHEMISTRY

Temporal quantitative proteomics of Saccharomyces cerevisiae in response to a nonlethal concentration of furfural

(2009) Feng-Ming Lin et al.   PROTEOMICS

The Ehrlich Pathway for Fusel Alcohol Production: a Century of Research on Saccharomyces cerevisiae Metabolism

(2008) L. A. Hazelwood et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Multiple gene-mediated NAD(P)H-dependent aldehyde reduction is a mechanism of in situ detoxification of furfural and 5-hydroxymethylfurfural by Saccharomyces cerevisiae

(2008) Z. Lewis Liu et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY