What are we missing about marine invasions? Filling in the gaps with evolutionary genomics

Finding the Genomic Basis of Local Adaptation: Pitfalls, Practical Solutions, and Future Directions

(2016) Sean Hoban et al.   AMERICAN NATURALIST

Accurate Transposable Element Annotation Is Vital When Analyzing New Genome Assemblies

(2016) Roy N. Platt et al.   Genome Biology and Evolution

Species composition and hybridisation of mussel species (Bivalvia: Mytilidae) in Australia

(2016) Emi S. Ab Rahim et al.   MARINE AND FRESHWATER RESEARCH

Fishing for divergence in a sea of connectivity: The utility of ddRADseq genotyping in a marine invertebrate, the black-lip pearl oyster Pinctada margaritifera

(2016) Monal M. Lal et al.   Marine Genomics

Epigenomics in marine fishes

(2016) David C.H. Metzger et al.   Marine Genomics

Contrasting Frequencies and Effects ofcis- andtrans-Regulatory Mutations Affecting Gene Expression

(2016) Brian P. H. Metzger et al.   MOLECULAR BIOLOGY AND EVOLUTION

New view of population genetics of zooplankton: RAD-seq analysis reveals population structure of the North Atlantic planktonic copepod Centropages typicus

(2016) L. Blanco-Bercial et al.   MOLECULAR ECOLOGY

Population genomic evidence for adaptive differentiation in the Baltic Sea herring

(2016) Baocheng Guo et al.   MOLECULAR ECOLOGY

Multiple dispersal vectors drive range expansion in an invasive marine species

(2016) Mark F. Richardson et al.   MOLECULAR ECOLOGY

Controlling false discoveries in genome scans for selection

(2016) Olivier François et al.   MOLECULAR ECOLOGY

Epigenetics in ecology and evolution: what we know and what we need to know

(2016) Koen J. F. Verhoeven et al.   MOLECULAR ECOLOGY

Harnessing the power of RADseq for ecological and evolutionary genomics

(2016) Kimberly R. Andrews et al.   NATURE REVIEWS GENETICS

A First Insight into the Genome of the Filter-Feeder Mussel Mytilus galloprovincialis

(2016) Maria Murgarella et al.   PLoS One

Agricultural applications of insect ecological genomics

(2016) Monica F Poelchau et al.   Current Opinion in Insect Science

Draft genome of the Chinese mitten crab, Eriocheir sinensis

(2016) Linsheng Song et al.   GigaScience

Assembly, Assessment, and Availability of De novo Generated Eukaryotic Transcriptomes

(2016) Joanna Moreton et al.   Frontiers in Genetics

Detection and Removal of PCR Duplicates in Population Genomic ddRAD Studies by Addition of a Degenerate Base Region (DBR) in Sequencing Adapters

(2016) Hannah Schweyen et al.   BIOLOGICAL BULLETIN

Analysis of DNA methylation in different tissues of Fenneropenaeus chinensis from the wild population and Huanghai No. 1

(2015) Yuying He et al.   ACTA OCEANOLOGICA SINICA

Reliable Detection of Loci Responsible for Local Adaptation: Inference of a Null Model through Trimming the Distribution of FST

(2015) Michael C. Whitlock et al.   AMERICAN NATURALIST

PANNZER: high-throughput functional annotation of uncharacterized proteins in an error-prone environment

(2015) Patrik Koskinen et al.   BIOINFORMATICS

Construction of a high-density genetic map and mapping of a sex-linked locus for the brown alga Undaria pinnatifida (Phaeophyceae) based on large scale marker development by specific length amplified fragment (SLAF) sequencing

(2015) Tifeng Shan et al.   BMC GENOMICS

De novo assembly of the Carcinus maenas transcriptome and characterization of innate immune system pathways

(2015) Bas Verbruggen et al.   BMC GENOMICS

RNA-Seq in Mytilus galloprovincialis: comparative transcriptomics and expression profiles among different tissues

(2015) Rebeca Moreira et al.   BMC GENOMICS

Completing the human genome: the progress and challenge of satellite DNA assembly

(2015) Karen H. Miga   CHROMOSOME RESEARCH

Does DNA methylation regulate metamorphosis? The case of the sea lamprey (Petromyzon marinus) as an example

(2015) Lara Covelo-Soto et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY B-BIOCHEMISTRY & MOLECULAR BIOLOGY

Applications of next-generation sequencing to the study of biological invasions

(2015) Marc Rius et al.   Current Zoology

Genetic analysis along an invasion pathway reveals endemic cryptic taxa, but a single species with little population structure in the introduced range

(2015) Matthew P. Hill et al.   DIVERSITY AND DISTRIBUTIONS

Empirically simulated spatial sorting points at fast epigenetic changes in dispersal behaviour

(2015) Katrien Hilde Petra Van Petegem et al.   EVOLUTIONARY ECOLOGY

DNA methylation is associated with expression level changes of galectin gene in mantle wound healing process of pearl oyster, Pinctada fucata

(2015) Yaoguo Li et al.   FISH & SHELLFISH IMMUNOLOGY

Genome-Wide Scan for Adaptive Divergence and Association with Population-Specific Covariates

(2015) M. Gautier   GENETICS

Adaptation to Low Salinity Promotes Genomic Divergence in Atlantic Cod ( Gadus morhua L.)

(2015) Paul R. Berg et al.   Genome Biology and Evolution

Common garden experiments in the genomic era: new perspectives and opportunities

(2015) P de Villemereuil et al.   HEREDITY

DNA Methylation in Basal Metazoans: Insights from Ctenophores

(2015) Emily C. Dabe et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

How Plasticity and Evolution Work in the Real World

(2015) Robin S. Waples   JOURNAL OF HEREDITY

Key Questions on the Role of Phenotypic Plasticity in Eco-Evolutionary Dynamics

(2015) Andrew P. Hendry   JOURNAL OF HEREDITY

Comparison of Custom Capture for Targeted Next-Generation DNA Sequencing

(2015) Eric Samorodnitsky et al.   JOURNAL OF MOLECULAR DIAGNOSTICS

Ascidians as models for studying invasion success

(2015) Aibin Zhan et al.   MARINE BIOLOGY

Signatures of positive selection: from selective sweeps at individual loci to subtle allele frequency changes in polygenic adaptation

(2015) Wolfgang Stephan   MOLECULAR ECOLOGY

A practical guide to environmental association analysis in landscape genomics

(2015) Christian Rellstab et al.   MOLECULAR ECOLOGY

The devil is in the details: genetic variation in introduced populations and its contributions to invasion

(2015) Katrina M. Dlugosch et al.   MOLECULAR ECOLOGY

Evaluating the performance of selection scans to detect selective sweeps in domestic dogs

(2015) Florencia Schlamp et al.   MOLECULAR ECOLOGY

Transcriptome sequencing reveals both neutral and adaptive genome dynamics in a marine invader

(2015) C. K. Tepolt et al.   MOLECULAR ECOLOGY

What we still don't know about invasion genetics

(2015) Dan G. Bock et al.   MOLECULAR ECOLOGY

RNA-seq reveals regional differences in transcriptome response to heat stress in the marine snailChlorostoma funebralis

(2015) Lani U. Gleason et al.   MOLECULAR ECOLOGY

SNP genotyping and population genomics from expressed sequences - current advances and future possibilities

(2015) Pierre De Wit et al.   MOLECULAR ECOLOGY

A genetic perspective on rapid evolution in cane toads (Rhinella marina)

(2015) Lee A. Rollins et al.   MOLECULAR ECOLOGY

Targeted capture in evolutionary and ecological genomics

(2015) Matthew R. Jones et al.   MOLECULAR ECOLOGY

Contemporary evolution during invasion: evidence for differentiation, natural selection, and local adaptation

(2015) Robert I. Colautti et al.   MOLECULAR ECOLOGY

RAD genotyping reveals fine-scale genetic structuring and provides powerful population assignment in a widely distributed marine species, the American lobster (Homarus americanus)

(2015) Laura Benestan et al.   MOLECULAR ECOLOGY

Detection of selective sweeps in structured populations: a comparison of recent methods

(2015) Alexandra I. Vatsiou et al.   MOLECULAR ECOLOGY

Development of highly reliable in silico SNP resource and genotyping assay from exome capture and sequencing: an example from black spruce (Picea mariana)

(2015) Nathalie Pavy et al.   Molecular Ecology Resources

Expected Shannon Entropy and Shannon Differentiation between Subpopulations for Neutral Genes under the Finite Island Model

(2015) Anne Chao et al.   PLoS One

Complete Plastid Genome Sequence of the Brown Alga Undaria pinnatifida

(2015) Lei Zhang et al.   PLoS One

Construction of a High-Density Genetic Map and Quantitative Trait Locus Mapping in the Sea Cucumber Apostichopus japonicus

(2015) Meilin Tian et al.   Scientific Reports

Shape variation in the least killifish: ecological associations of phenotypic variation and the effects of a common garden

(2015) J. Alex Landy et al.   Ecology and Evolution

The more pieces, the better the puzzle: sperm concentration increases gametic compatibility

(2015) Craig D. H. Sherman et al.   Ecology and Evolution

Classification of Non-Indigenous Species Based on Their Impacts: Considerations for Application in Marine Management

(2015) Henn Ojaveer et al.   PLOS BIOLOGY

An Intracellular Transcriptomic Atlas of the Giant Coenocyte Caulerpa taxifolia

(2015) Aashish Ranjan et al.   PLoS Genetics

Applications of next-generation sequencing to the study of biological invasions

(2015) Marc Rius et al.   Current Zoology

Using linkage maps to correct and scaffold de novo genome assemblies: methods, challenges, and computational tools

(2015) Janna L. Fierst   Frontiers in Genetics

Degenerate adaptor sequences for detecting PCR duplicates in reduced representation sequencing data improve genotype calling accuracy

(2015) M. M. Y. Tin et al.   Molecular Ecology Resources

Population Genomics Reveals Seahorses (Hippocampus erectus) of the Western Mid-Atlantic Coast to Be Residents Rather than Vagrants

(2015) J. T. Boehm et al.   PLoS One

De Novo Assembly and Characterization of the Invasive Northern Pacific Seastar Transcriptome

(2015) Mark F. Richardson et al.   PLoS One

Understanding Acceptable Level of Risk: Incorporating the Economic Cost of Under-Managing Invasive Species

(2015) Alisha D. Davidson et al.   PLoS One

lncRScan-SVM: A Tool for Predicting Long Non-Coding RNAs Using Support Vector Machine

(2015) Lei Sun et al.   PLoS One

Adaptation in marine invasion: a genetic perspective

(2014) C. K. Tepolt   BIOLOGICAL INVASIONS

Worldwide phylogeography of the invasive ctenophore Mnemiopsis leidyi (Ctenophora) based on nuclear and mitochondrial DNA data

(2014) K. M. Bayha et al.   BIOLOGICAL INVASIONS

Gene expression profiling in gills of the great spider crab Hyas araneus in response to ocean acidification and warming

(2014) Lars Harms et al.   BMC GENOMICS

Genomic Signature of Adaptation to Climate inMedicago truncatula

(2014) Jeremy B. Yoder et al.   GENETICS

Epigenetics and Evolution

(2014) I. Mendizabal et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

De novo transcriptome analysis of the gametophyte of Undaria pinnatifida (Phaeophyceae)

(2014) Ti Feng Shan et al.   JOURNAL OF APPLIED PHYCOLOGY

Rapid increase in dispersal during range expansion in the invasive ladybirdHarmonia axyridis

(2014) E. Lombaert et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Genetic structure of Carcinus maenas in southeast Australia

(2014) CT Burden et al.   MARINE ECOLOGY PROGRESS SERIES

Genome Scans for Detecting Footprints of Local Adaptation Using a Bayesian Factor Model

(2014) Nicolas Duforet-Frebourg et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genome scans for the contemporary response to selection in quantitative traits

(2014) Katie E. Lotterhos et al.   MOLECULAR ECOLOGY

Demystifying the RAD fad

(2014) Jonathan B. Puritz et al.   MOLECULAR ECOLOGY

Rapid genetic adaptation precedes the spread of an exotic plant species

(2014) Katrien Vandepitte et al.   MOLECULAR ECOLOGY

Evaluation of demographic history and neutral parameterization on the performance ofFSToutlier tests

(2014) Katie E. Lotterhos et al.   MOLECULAR ECOLOGY

Sequencing pools of individuals — mining genome-wide polymorphism data without big funding

(2014) Christian Schlötterer et al.   NATURE REVIEWS GENETICS

lncRNAdb v2.0: expanding the reference database for functional long noncoding RNAs

(2014) Xiu Cheng Quek et al.   NUCLEIC ACIDS RESEARCH

Transcriptome sequencing revealed the genes and pathways involved in salinity stress of Chinese mitten crab, Eriocheir sinensis

(2014) Erchao Li et al.   PHYSIOLOGICAL GENOMICS

De Novo Assembly of a Transcriptome for Calanus finmarchicus (Crustacea, Copepoda) – The Dominant Zooplankter of the North Atlantic Ocean

(2014) Petra H. Lenz et al.   PLoS One

Genome-Wide Analysis of DNA Methylation in Five Tissues of Zhikong Scallop, Chlamys farreri

(2014) Yan Sun et al.   PLoS One

Gene Discovery through Transcriptome Sequencing for the Invasive Mussel Limnoperna fortunei

(2014) Marcela Uliano-Silva et al.   PLoS One

Transcriptome Changes in Eriocheir sinensis Megalopae after Desalination Provide Insights into Osmoregulation and Stress Adaption in Larvae

(2014) Min Hui et al.   PLoS One

Comparative Transcriptome Analysis of Two Oysters, Crassostrea gigas and Crassostrea hongkongensis Provides Insights into Adaptation to Hypo-Osmotic Conditions

(2014) Xuelin Zhao et al.   PLoS One

Stick Insect Genomes Reveal Natural Selection's Role in Parallel Speciation

(2014) V. Soria-Carrasco et al.   SCIENCE

Advances and limits of using population genetics to understand local adaptation

(2014) Peter Tiffin et al.   TRENDS IN ECOLOGY & EVOLUTION

Target Capture and Massive Sequencing of Genes Transcribed inMytilus galloprovincialis

(2014) Umberto Rosani et al.   Biomed Research International

Epigenetic features in the oyster Crassostrea gigas suggestive of functionally relevant promoter DNA methylation in invertebrates

(2014) Guillaume Rivière   Frontiers in Physiology

The role of DNA methylation on Octopus vulgaris development and their perspectives

(2014) Eva Díaz-Freije et al.   Frontiers in Physiology

dDocent: a RADseq, variant-calling pipeline designed for population genomics of non-model organisms

(2014) Jonathan B. Puritz et al.   PeerJ

Are genes faster than crabs? Mitochondrial introgression exceeds larval dispersal during population expansion of the invasive crab Carcinus maenas

(2014) J. A. Darling et al.   Royal Society Open Science

RNA-seq differential expression studies: more sequence or more replication?

(2013) Yuwen Liu et al.   BIOINFORMATICS

GENETIC ISOLATION BY ENVIRONMENT OR DISTANCE: WHICH PATTERN OF GENE FLOW IS MOST COMMON?

(2013) Jason P. Sexton et al.   EVOLUTION

Molecular genetics and genomics generate new insights into invertebrate pest invasions

(2013) Heather Kirk et al.   Evolutionary Applications

A rapid and simple method for distinguishing two mitten crabs (Eriocheir sinensis and Eriocheir japonica) in Korea using PCR-RFLP and PCR

(2013) Young Ah Cho et al.   FOOD CONTROL

Detecting Signatures of Selection Through Haplotype Differentiation Among Hierarchically Structured Populations

(2013) M. I. Fariello et al.   GENETICS

Robust Identification of Local Adaptation from Allele Frequencies

(2013) T. Gunther et al.   GENETICS

Gene expression drives local adaptation in humans

(2013) H. B. Fraser   GENOME RESEARCH

Patterns of DNA Methylation Throughout a Range Expansion of an Introduced Songbird

(2013) A. L. Liebl et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

The Global Invertebrate Genomics Alliance (GIGA): Developing Community Resources to Study Diverse Invertebrate Genomes

(2013)   JOURNAL OF HEREDITY

Population genetics of the invasive ctenophore Mnemiopsis leidyi in Europe reveal source–sink dynamics and secondary dispersal to the Mediterranean Sea

(2013) S Bolte et al.   MARINE ECOLOGY PROGRESS SERIES

Outlier SNP markers reveal fine-scale genetic structuring across European hake populations (Merluccius merluccius)

(2013) Ilaria Milano et al.   MOLECULAR ECOLOGY

Phylogeography and adaptation genetics of stickleback from the Haida Gwaii archipelago revealed using genome-wide single nucleotide polymorphism genotyping

(2013) Bruce E. Deagle et al.   MOLECULAR ECOLOGY

RADseq underestimates diversity and introduces genealogical biases due to nonrandom haplotype sampling

(2013) B. Arnold et al.   MOLECULAR ECOLOGY

Genomic divergence between the migratory and stationary ecotypes of Atlantic cod

(2013) Bård O. Karlsen et al.   MOLECULAR ECOLOGY

Pitfalls of predicting complex traits from SNPs

(2013) Naomi R. Wray et al.   NATURE REVIEWS GENETICS

Transcriptome Analysis and Discovery of Genes Involved in Immune Pathways from Hepatopancreas of Microbial Challenged Mitten Crab Eriocheir sinensis

(2013) Xihong Li et al.   PLoS One

Transcriptome Analysis of Portunus trituberculatus in Response to Salinity Stress Provides Insights into the Molecular Basis of Osmoregulation

(2013) Jianjian Lv et al.   PLoS One

Evolutionary change during experimental ocean acidification

(2013) M. H. Pespeni et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Genome of the Ctenophore Mnemiopsis leidyi and Its Implications for Cell Type Evolution

(2013) J. F. Ryan et al.   SCIENCE

Comparative study of de novo assembly and genome-guided assembly strategies for transcriptome reconstruction based on RNA-Seq

(2013) BingXin Lu et al.   Science China-Life Sciences

Population genomics of rapid adaptation by soft selective sweeps

(2013) Philipp W. Messer et al.   TRENDS IN ECOLOGY & EVOLUTION

Microsatellite markers developed through pyrosequencing allow clonal discrimination in the invasive alga Caulerpa taxifolia

(2013) Sophie Arnaud-Haond et al.   Conservation Genetics Resources

Reference-Free Population Genomics from Next-Generation Transcriptome Data and the Vertebrate–Invertebrate Gap

(2013) Philippe Gayral et al.   PLoS Genetics

Genomic organization, evolution, and expression of photoprotein and opsin genes in Mnemiopsis leidyi: a new view of ctenophore photocytes

(2012) Christine E Schnitzler et al.   BMC BIOLOGY

Transcriptome-based exon capture enables highly cost-effective comparative genomic data collection at moderate evolutionary scales

(2012) Ke Bi et al.   BMC GENOMICS

Comparative description of ten transcriptomes of newly sequenced invertebrates and efficiency estimation of genomic sampling in non-model taxa

(2012) Ana Riesgo et al.   Frontiers in Zoology

The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression

(2012) T. Derrien et al.   GENOME RESEARCH

Genetic diversity and relationships of the brown alga Undaria pinnatifida cultivated along the Dalian Coast as revealed by amplified fragment length polymorphism markers

(2012) Shiguo Li et al.   JOURNAL OF APPLIED PHYCOLOGY

Detection of Epigenetic Variations in the Protoplast-Derived Germlings of Ulva reticulata Using Methylation Sensitive Amplification Polymorphism (MSAP)

(2012) Vishal Gupta et al.   MARINE BIOTECHNOLOGY

Environmental selection on transcriptome-derived SNPs in a high gene flow marine fish, the Atlantic herring (Clupea harengus)

(2012) MORTEN T. LIMBORG et al.   MOLECULAR ECOLOGY

The effect of RAD allele dropout on the estimation of genetic variation within and between populations

(2012) Mathieu Gautier et al.   MOLECULAR ECOLOGY

Population genomics based on low coverage sequencing: how low should we go?

(2012) C. Alex Buerkle et al.   MOLECULAR ECOLOGY

Transcriptome-wide polymorphisms of red abalone (Haliotis rufescens) reveal patterns of gene flow and local adaptation

(2012) Pierre De Wit et al.   MOLECULAR ECOLOGY

SNP-array reveals genome-wide patterns of geographical and potential adaptive divergence across the natural range of Atlantic salmon (Salmo salar)

(2012) Vincent Bourret et al.   MOLECULAR ECOLOGY

Population genomics of Pacific lamprey: adaptive variation in a highly dispersive species

(2012) Jon E. Hess et al.   MOLECULAR ECOLOGY

The simple fool's guide to population genomics via RNA-Seq: an introduction to high-throughput sequencing data analysis

(2012) Pierre De Wit et al.   Molecular Ecology Resources

Phylogenetic analyses reveal extensive cryptic speciation and host specialization in an economically important mite taxon

(2012) Adam D. Miller et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Comparative studies of gene expression and the evolution of gene regulation

(2012) Irene Gallego Romero et al.   NATURE REVIEWS GENETICS

Spatial Sorting Drives Morphological Variation in the Invasive Bird, Acridotheris tristis

(2012) Cécile Berthouly-Salazar et al.   PLoS One

Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species

(2012) Brant K. Peterson et al.   PLoS One

Temperature during embryonic development has persistent effects on thermal acclimation capacity in zebrafish

(2012) G. R. Scott et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Invasive alien Crustacea: dispersal, establishment, impact and control

(2011) Bernd Hänfling et al.   BIOCONTROL

Genome-wide approaches to the study of adaptive gene expression evolution

(2011) Hunter B. Fraser   BIOESSAYS

Predicting the Probability of Outbreeding Depression

(2011) RICHARD FRANKHAM et al.   CONSERVATION BIOLOGY

DNA methylation: A source of random variation in natural populations

(2011) Rachel Massicotte et al.   Epigenetics

Intraspecific variation in thermotolerance and morphology of the invasive European green crab, Carcinus maenas, on the west coast of North America

(2011) Amanda L. Kelley et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Molecular evidence for the occurrence of ctenophoreMertensia ovumin the northern Baltic Sea and implications for the status of theMnemiopsis leidyiinvasion

(2011) Elena Gorokhova et al.   LIMNOLOGY AND OCEANOGRAPHY

Genome-wide genetic marker discovery and genotyping using next-generation sequencing

(2011) John W. Davey et al.   NATURE REVIEWS GENETICS

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

An evolutionary process that assembles phenotypes through space rather than through time

(2011) R. Shine et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Asymmetric dispersal allows an upstream region to control population structure throughout a species' range

(2011) J. M. Pringle et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transcriptomic resilience to global warming in the seagrass Zostera marina, a marine foundation species

(2011) S. U. Franssen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Heritable Epigenetic Variation among Maize Inbreds

(2011) Steve R. Eichten et al.   PLoS Genetics

Comparison of solution-based exome capture methods for next generation sequencing

(2011) Anna-Maija Sulonen et al.   GENOME BIOLOGY

Local Adaptation in Marine Invertebrates

(2010) Eric Sanford et al.   Annual Review of Marine Science

Multiple introductions and invasion pathways for the invasive ctenophore Mnemiopsis leidyi in Eurasia

(2010) Sara Ghabooli et al.   BIOLOGICAL INVASIONS

Genetic diversity of Southern hemisphere blue mussels (Bivalvia: Mytilidae) and the identification of non-indigenous taxa

(2010) KRISTEN M. WESTFALL et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data

(2010) Petr Novák et al.   BMC BIOINFORMATICS

Combining target enrichment with barcode multiplexing for high throughput SNP discovery

(2010) Nik Cummings et al.   BMC GENOMICS

DNA methylation patterns provide insight into epigenetic regulation in the Pacific oyster (Crassostrea gigas)

(2010) Mackenzie R Gavery et al.   BMC GENOMICS

A hitchhiker’s guide to the Maritimes: anthropogenic transport facilitates long-distance dispersal of an invasive marine crab to Newfoundland

(2010) A. M. H. Blakeslee et al.   DIVERSITY AND DISTRIBUTIONS

PERSPECTIVE: Linking concepts in the ecology and evolution of invasive plants: network analysis shows what has been most studied and identifies knowledge gaps

(2010) Sonia Vanderhoeven et al.   Evolutionary Applications

Detecting Selection in Population Trees: The Lewontin and Krakauer Test Extended

(2010) M. Bonhomme et al.   GENETICS

The Next Generation of Molecular Markers From Massively Parallel Sequencing of Pooled DNA Samples

(2010) Andreas Futschik et al.   GENETICS

Transcriptomic responses to heat stress in invasive and native blue mussels (genus Mytilus): molecular correlates of invasive success

(2010) B. L. Lockwood et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Gene expression analysis for the identification of selection and local adaptation in fishes

(2010) P. F. Larsen et al.   JOURNAL OF FISH BIOLOGY

Microsatellites reveal origin and genetic diversity of Eurasian invasions by one of the world’s most notorious marine invader, Mnemiopsis leidyi (Ctenophora)

(2010) THORSTEN B. H. REUSCH et al.   MOLECULAR ECOLOGY

Environmentally induced phenotypes and DNA methylation: how to deal with unpredictable conditions until the next generation and after

(2010) BERNARD ANGERS et al.   MOLECULAR ECOLOGY

Transcriptomic responses to salinity stress in invasive and native blue mussels (genus Mytilus)

(2010) BRENT L. LOCKWOOD et al.   MOLECULAR ECOLOGY

Target-enrichment strategies for next-generation sequencing

(2010) Lira Mamanova et al.   NATURE METHODS

Adaptation – not by sweeps alone

(2010) Jonathan K. Pritchard et al.   NATURE REVIEWS GENETICS

Genomics and the future of conservation genetics

(2010) Fred W. Allendorf et al.   NATURE REVIEWS GENETICS

Evidence for widespread adaptive evolution of gene expression in budding yeast

(2010) H. B. Fraser et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

European green crabs (Carcinus maenas) in the northeastern Pacific: genetic evidence for high population connectivity and current-mediated expansion from a single introduced source population

(2009) C. K. Tepolt et al.   DIVERSITY AND DISTRIBUTIONS

Transcriptomic response of sea urchin larvae Strongylocentrotus purpuratus to CO2-driven seawater acidification

(2009) A. E. Todgham et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Genetic diversity and population structure of the Chinese mitten crab Eriocheir sinensis in its native range

(2009) Liying Sui et al.   MARINE BIOLOGY

Seasonal and latitudinal acclimatization of cardiac transcriptome responses to thermal stress in porcelain crabs, Petrolisthes cinctipes

(2009) JONATHON H. STILLMAN et al.   MOLECULAR ECOLOGY

A Toad More Traveled: The Heterogeneous Invasion Dynamics of Cane Toads in Australia

(2008) Mark C. Urban et al.   AMERICAN NATURALIST

Developmental expression of homeobox genes in the ctenophore Mnemiopsis leidyi

(2008) Kevin Pang et al.   DEVELOPMENT GENES AND EVOLUTION

FINE-SCALE ADAPTATION IN A CLONAL SEA ANEMONE

(2008) Craig D. H. Sherman et al.   EVOLUTION

Paradigm shifts in marine fisheries genetics: ugly hypotheses slain by beautiful facts

(2008) Lorenz Hauser et al.   FISH AND FISHERIES

Assessing the global threat of invasive species to marine biodiversity

(2008) Jennifer L Molnar et al.   FRONTIERS IN ECOLOGY AND THE ENVIRONMENT

A Genome-Scan Method to Identify Selected Loci Appropriate for Both Dominant and Codominant Markers: A Bayesian Perspective

(2008) M. Foll et al.   GENETICS

Applications of next-generation sequencing technologies in functional genomics

(2008) Olena Morozova et al.   GENOMICS

Genetic patterns across multiple introductions of the globally invasive crab genusCarcinus

(2008) JOHN A. DARLING et al.   MOLECULAR ECOLOGY

Pleistocene separation of mitochondrial lineages of Mytilus spp. mussels from Northern and Southern Hemispheres and strong genetic differentiation among southern populations

(2008) Karin Gérard et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Detecting genetic responses to environmental change

(2008) Ary A. Hoffmann et al.   NATURE REVIEWS GENETICS

Surfing during population expansions promotes genetic revolutions and structuration

(2008) Laurent Excoffier et al.   TRENDS IN ECOLOGY & EVOLUTION

Facing change: forms and foundations of contemporary adaptation to biotic invasions

(2007) SCOTT P. CARROLL   MOLECULAR ECOLOGY

Founding events in species invasions: genetic variation, adaptive evolution, and the role of multiple introductions

(2007) K. M. DLUGOSCH et al.   MOLECULAR ECOLOGY

Polymerase chain reaction-single strand conformation polymorphism analyses of nuclear and chloroplast DNA provide evidence for recombination, multiple introductions and nascent speciation in the Caulerpa taxifolia complex

(2003) I. Meusnier et al.   MOLECULAR ECOLOGY