The Global Invertebrate Genomics Alliance (GIGA): Developing Community Resources to Study Diverse Invertebrate Genomes

The Diversity of Land Molluscs—Questions Unanswered and Questions Unasked*

(2013) Robert A. D. Cameron   AMERICAN MALACOLOGICAL BULLETIN

Patterns of Freshwater Bivalve Global Diversity and the State of Phylogenetic Studies on the Unionoida, Sphaeriidae, and Cyrenidae*

(2013) Daniel L. Graf   AMERICAN MALACOLOGICAL BULLETIN

Shared Metabolic Pathways in a Coevolved Insect-Bacterial Symbiosis

(2013) Calum W. Russell et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Toward a statistically explicit understanding of de novo sequence assembly

(2013) M. Howison et al.   BIOINFORMATICS

Silicateins-A Novel Paradigm in Bioinorganic Chemistry: Enzymatic Synthesis of Inorganic Polymeric Silica

(2013) Werner E. G. Müller et al.   CHEMISTRY-A EUROPEAN JOURNAL

The ENCODE project: Missteps overshadowing a success

(2013) Sean R. Eddy   CURRENT BIOLOGY

A first exploration of genome size diversity in sponges

(2013) Nicholas W. Jeffery et al.   GENOME

Sponge Hybridomas: Applications and Implications

(2013) S. A. Pomponi et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

Novel Scenarios of Early Animal Evolution--Is It Time to Rewrite Textbooks?

(2013) M. Dohrmann et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

A NGS approach to the encrusting Mediterranean spongeCrella elegans(Porifera, Demospongiae, Poecilosclerida): transcriptome sequencing, characterization and overview of the gene expression along three life cycle stages

(2013) A. R. Pérez-Porro et al.   Molecular Ecology Resources

Deep metazoan phylogeny: When different genes tell different stories

(2013) Tetyana Nosenko et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Genomic evidence for ameiotic evolution in the bdelloid rotifer Adineta vaga

(2013) Jean-François Flot et al.   NATURE

The genomes of four tapeworm species reveal adaptations to parasitism

(2013) Isheng J. Tsai et al.   NATURE

Genes Related to Ion-Transport and Energy Production Are Upregulated in Response to CO2-Driven pH Decrease in Corals: New Insights from Transcriptome Analysis

(2013) Jeremie Vidal-Dupiol et al.   PLoS One

Genomic basis for coral resilience to climate change

(2013) Daniel J. Barshis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species

(2013) Keith R Bradnam et al.   GigaScience

The extreme longevity ofArctica islandicais associated with increased peroxidation resistance in mitochondrial membranes

(2012) Daniel Munro et al.   AGING CELL

The Magnitude of Global Marine Species Diversity

(2012) Ward Appeltans et al.   CURRENT BIOLOGY

Draft Genome of the Pearl Oyster Pinctada fucata: A Platform for Understanding Bivalve Biology

(2012) T. Takeuchi et al.   DNA RESEARCH

Truth and consequences: the bioinvasion of the Mediterranean Sea

(2012) Bella Sarah GALIL   Integrative Zoology

Whole Transcriptome Analysis of the CoralAcropora milleporaReveals Complex Responses to CO2-driven Acidification during the Initiation of Calcification

(2012) A. MOYA et al.   MOLECULAR ECOLOGY

Marine natural products

(2012) John W. Blunt et al.   NATURAL PRODUCT REPORTS

ENCODE explained

(2012) Joseph R. Ecker et al.   NATURE

Lessons for big-data projects

(2012) Ewan Birney   NATURE

The oyster genome reveals stress adaptation and complexity of shell formation

(2012) Guofan Zhang et al.   NATURE

Insights into bilaterian evolution from three spiralian genomes

(2012) Oleg Simakov et al.   NATURE

Structure, function and diversity of the healthy human microbiome

(2012)   NATURE

The expanding scope of DNA sequencing

(2012) Jay Shendure et al.   NATURE BIOTECHNOLOGY

Trends in the Discovery of New Marine Natural Products from Invertebrates over the Last Two Decades – Where and What Are We Bioprospecting?

(2012) Miguel Costa Leal et al.   PLoS One

Global Diversity of Sponges (Porifera)

(2012) Rob W. M. Van Soest et al.   PLoS One

An Anatomical Description of a Miniaturized Acorn Worm (Hemichordata, Enteropneusta) with Asexual Reproduction by Paratomy

(2012) Katrine Worsaae et al.   PLoS One

Coral Thermal Tolerance: Tuning Gene Expression to Resist Thermal Stress

(2012) Anthony J. Bellantuono et al.   PLoS One

FoxO is a critical regulator of stem cell maintenance in immortal Hydra

(2012) A.-M. Boehm et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The 27-year decline of coral cover on the Great Barrier Reef and its causes

(2012) G. De'ath et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Extraordinarily rapid life-history divergence between Cryptasterina sea star species

(2012) J. B. Puritz et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

What we know and don’t know about Earth's missing biodiversity

(2012) Brett R. Scheffers et al.   TRENDS IN ECOLOGY & EVOLUTION

Cephalopod genomics: A plan of strategies and organization

(2012) Caroline B. Albertin et al.   Standards in Genomic Sciences

Tissue sampling methods and standards for vertebrate genomics

(2012) Pamela BY Wong et al.   GigaScience

A locally funded Puerto Rican parrot (Amazona vittata) genome sequencing project increases avian data and advances young researcher education

(2012) Taras K Oleksyk et al.   GigaScience

Relic aragonite from Ordovician–Silurian brachiopods: Implications for the evolution of calcification

(2011) U. Balthasar et al.   GEOLOGY

Cell Cultures from Marine Invertebrates: New Insights for Capturing Endless Stemness

(2011) Baruch Rinkevich   MARINE BIOTECHNOLOGY

Pancrustacean Phylogeny in the Light of New Phylogenomic Data: Support for Remipedia as the Possible Sister Group of Hexapoda

(2011) B. M. von Reumont et al.   MOLECULAR BIOLOGY AND EVOLUTION

Optimization of preservation and storage time of sponge tissues to obtain quality mRNA for next-generation sequencing

(2011) ANA RIESGO et al.   Molecular Ecology Resources

Using the Acropora digitifera genome to understand coral responses to environmental change

(2011) Chuya Shinzato et al.   NATURE

Acoelomorph flatworms are deuterostomes related to Xenoturbella

(2011) Hervé Philippe et al.   NATURE

The genome of Tetranychus urticae reveals herbivorous pest adaptations

(2011) Miodrag Grbić et al.   NATURE

Resolving the evolutionary relationships of molluscs with phylogenomic tools

(2011) Stephen A. Smith et al.   NATURE

Phylogenomic analyses unravel annelid evolution

(2011) Torsten H. Struck et al.   NATURE

A decade’s perspective on DNA sequencing technology

(2011) Elaine R. Mardis   NATURE

959 Nematode Genomes: a semantic wiki for coordinating sequencing projects

(2011) S. Kumar et al.   NUCLEIC ACIDS RESEARCH

Higher-level metazoan relationships: recent progress and remaining questions

(2011) Gregory D. Edgecombe et al.   ORGANISMS DIVERSITY & EVOLUTION

Cestode genomics - progress and prospects for advancing basic and applied aspects of flatworm biology

(2011) P. D. OLSON et al.   PARASITE IMMUNOLOGY

Deep-Water Chemosynthetic Ecosystem Research during the Census of Marine Life Decade and Beyond: A Proposed Deep-Ocean Road Map

(2011) Christopher R. German et al.   PLoS One

The Ecoresponsive Genome of Daphnia pulex

(2011) J. K. Colbourne et al.   SCIENCE

Creating a Buzz About Insect Genomes

(2011) G. E. Robinson et al.   SCIENCE

Echinoderm Phylogeny Including Xyloplax, a Progenetic Asteroid

(2011) Daniel A. Janies et al.   SYSTEMATIC BIOLOGY

Metaorganisms as the new frontier

(2011) Thomas C.G. Bosch et al.   ZOOLOGY

The Genomic Standards Consortium

(2011) Dawn Field et al.   PLOS BIOLOGY

The draft genome of the carcinogenic human liver fluke Clonorchis sinensis

(2011) Xiaoyun Wang et al.   GENOME BIOLOGY

Evolution of Invertebrate Deuterostomes and Hox/ParaHox Genes

(2011) Tetsuro Ikuta   GENOMICS PROTEOMICS & BIOINFORMATICS

The first metazoa living in permanently anoxic conditions

(2010) Roberto Danovaro et al.   BMC BIOLOGY

Reassociation kinetics-based approach for partial genome sequencing of the cattle tick, Rhipicephalus (Boophilus) microplus

(2010) Felix D Guerrero et al.   BMC GENOMICS

Bryostatins: biological context and biotechnological prospects

(2010) Amaro E Trindade-Silva et al.   CURRENT OPINION IN BIOTECHNOLOGY

A Twist in Time--The Evolution of Spiral Cleavage in the Light of Animal Phylogeny

(2010) A. Hejnol   INTEGRATIVE AND COMPARATIVE BIOLOGY

Why Does Insect RNA Look Degraded?

(2010) Eva C. Winnebeck et al.   JOURNAL OF INSECT SCIENCE

Improved Phylogenomic Taxon Sampling Noticeably Affects Nonbilaterian Relationships

(2010) K. S. Pick et al.   MOLECULAR BIOLOGY AND EVOLUTION

The phylogeography of the Placozoa suggests a taxon-rich phylum in tropical and subtropical waters

(2010) M. EITEL et al.   MOLECULAR ECOLOGY

The dynamic genome of Hydra

(2010) Jarrod A. Chapman et al.   NATURE

The Amphimedon queenslandica genome and the evolution of animal complexity

(2010) Mansi Srivastava et al.   NATURE

Arthropod relationships revealed by phylogenomic analysis of nuclear protein-coding sequences

(2010) Jerome C. Regier et al.   NATURE

Prepublication Data Release, Latency, and Genome Commons

(2010) J. L. Contreras   SCIENCE

The homeodomain complement of the ctenophore Mnemiopsis leidyi suggests that Ctenophora and Porifera diverged prior to the ParaHoxozoa

(2010) Joseph F Ryan et al.   EvoDevo

Correction: Phylogenetic placement of the enigmatic parasite, Polypodium hydriforme, within the Phylum Cnidaria

(2009) Nathaniel M Evans et al.   BMC EVOLUTIONARY BIOLOGY

Phylogenomics Revives Traditional Views on Deep Animal Relationships

(2009) Hervé Philippe et al.   CURRENT BIOLOGY

Every genome sequence needs a good map

(2009) H. A. Lewin et al.   GENOME RESEARCH

Genome 10K: A Proposal to Obtain Whole-Genome Sequence for 10 000 Vertebrate Species

(2009)   JOURNAL OF HEREDITY

The Schistosoma japonicum genome reveals features of host–parasite interplay

(2009)   NATURE

The genome of the blood fluke Schistosoma mansoni

(2009) Matthew Berriman et al.   NATURE

Assessing the root of bilaterian animals with scalable phylogenomic methods

(2009) A. Hejnol et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Concatenated Analysis Sheds Light on Early Metazoan Evolution and Fuels a Modern “Urmetazoon” Hypothesis

(2009) Bernd Schierwater et al.   PLOS BIOLOGY

The Great American Schism: Divergence of Marine Organisms After the Rise of the Central American Isthmus

(2008) H.A. Lessios   Annual Review of Ecology Evolution and Systematics

Phylogenetic placement of the enigmatic parasite, Polypodium hydriforme, within the Phylum Cnidaria

(2008) Nathaniel M Evans et al.   BMC EVOLUTIONARY BIOLOGY

A re-appraisal of the total biomass and annual production of Antarctic krill

(2008) A. Atkinson et al.   DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS

Slow Mitochondrial COI Sequence Evolution at the Base of the Metazoan Tree and Its Implications for DNA Barcoding

(2008) Danwei Huang et al.   JOURNAL OF MOLECULAR EVOLUTION

Differential gene expression during thermal stress and bleaching in the Caribbean coralMontastraea faveolata

(2008) M. K. DESALVO et al.   MOLECULAR ECOLOGY

The amphioxus genome and the evolution of the chordate karyotype

(2008) Nicholas H. Putnam et al.   NATURE

The Trichoplax genome and the nature of placozoans

(2008) Mansi Srivastava et al.   NATURE

Broad phylogenomic sampling improves resolution of the animal tree of life

(2008) Casey W. Dunn et al.   NATURE