De novo assembly of the Carcinus maenas transcriptome and characterization of innate immune system pathways

Dscam and pancrustacean immune memory – A review of the evidence

(2015) Sophie A.O. Armitage et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Antiviral defense in shrimp: From innate immunity to viral infection

(2014) Pei-Hui Wang et al.   ANTIVIRAL RESEARCH

Amount and metal composition of midgut gland metallothionein in shore crabs (Carcinus maenas) after exposure to cadmium in the food

(2014) Knud Ladegaard Pedersen et al.   AQUATIC TOXICOLOGY

SOAPdenovo-Trans: de novo transcriptome assembly with short RNA-Seq reads

(2014) Y. Xie et al.   BIOINFORMATICS

Reagent and laboratory contamination can critically impact sequence-based microbiome analyses

(2014) Susannah J Salter et al.   BMC BIOLOGY

Review of Dscam-mediated immunity in shrimp and other arthropods

(2014) Tze Hann Ng et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Uptake and Retention of Microplastics by the Shore Crab Carcinus maenas

(2014) Andrew J. R. Watts et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Ade novotranscriptome of European pollen beetle populations and its analysis, with special reference to insecticide action and resistance

(2014) C. T. Zimmer et al.   INSECT MOLECULAR BIOLOGY

De Novo Assembly and Annotation of Salvia splendens Transcriptome Using the Illumina Platform

(2014) Xiuxiu Ge et al.   PLoS One

De novo Cloning and Annotation of Genes Associated with Immunity, Detoxification and Energy Metabolism from the Fat Body of the Oriental Fruit Fly, Bactrocera dorsalis

(2014) Wen-Jia Yang et al.   PLoS One

RNA-Seq Analysis Using De Novo Transcriptome Assembly as a Reference for the Salmon Louse Caligus rogercresseyi

(2014) Cristian Gallardo-Escárate et al.   PLoS One

Transcriptome Sequencing and Gene Expression Analysis of Trichoderma brevicompactum under Different Culture Conditions

(2014) Xu-Ping Shentu et al.   PLoS One

Proteomic analysis in caged Mediterranean crab (Carcinus maenas) and chemical contaminant exposure in Téboulba Harbour, Tunisia

(2013) Jamel Jebali et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Global Transcriptome Profiling Reveals Molecular Mechanisms of Metal Tolerance in a Chronically Exposed Wild Population of Brown Trout

(2013) T. M. Uren Webster et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Metals bioaccumulation and histopathological biomarkers in Carcinus maenas crab from Bizerta lagoon, Tunisia

(2013) Sana Ben-Khedher et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Insect Antiviral Innate Immunity: Pathways, Effectors, and Connections

(2013) Megan B. Kingsolver et al.   JOURNAL OF MOLECULAR BIOLOGY

Transcriptome Analysis and Discovery of Genes Involved in Immune Pathways from Hepatopancreas of Microbial Challenged Mitten Crab Eriocheir sinensis

(2013) Xihong Li et al.   PLoS One

Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels

(2012) Marcel H. Schulz et al.   BIOINFORMATICS

Discovery of immune molecules and their crucial functions in shrimp immunity

(2012) Anchalee Tassanakajon et al.   FISH & SHELLFISH IMMUNOLOGY

RNA Interference with Special Reference to Combating Viruses of Crustacea

(2012) Kathy La Fauce et al.   Indian Journal of Virology

Disease will limit future food supply from the global crustacean fishery and aquaculture sectors

(2012) G.D. Stentiford et al.   JOURNAL OF INVERTEBRATE PATHOLOGY

Susceptibility to infection and pathogenicity of White Spot Disease (WSD) in non-model crustacean host taxa from temperate regions

(2012) K.S. Bateman et al.   JOURNAL OF INVERTEBRATE PATHOLOGY

Interaction between shrimp and white spot syndrome virus through PmRab7-VP28 complex: an insight using simulation and docking studies

(2012) Arunima Kumar Verma et al.   JOURNAL OF MOLECULAR MODELING

Effect of nanomaterials on the compound action potential of the shore crab,Carcinus maenas

(2012) Kirsten M. Windeatt et al.   Nanotoxicology

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics

(2012) M. Lohse et al.   NUCLEIC ACIDS RESEARCH

Use of oxidative stress biomarkers in Carcinus maenas to assess littoral zone contamination in Tunisia

(2011) J Ghedira et al.   Aquatic Biology

Invasive alien Crustacea: dispersal, establishment, impact and control

(2011) Bernd Hänfling et al.   BIOCONTROL

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Integrative analysis of environmental sequences using MEGAN4

(2011) D. H. Huson et al.   GENOME RESEARCH

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

HMMER web server: interactive sequence similarity searching

(2011) R. D. Finn et al.   NUCLEIC ACIDS RESEARCH

Virus Entry by Endocytosis

(2010) Jason Mercer et al.   Annual Review of Biochemistry

Peptidoglycan activation of the proPO-system without a peptidoglycan receptor protein (PGRP)?

(2010) Haipeng Liu et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Regulation and function of the melanization reaction in Drosophila

(2010) Huaping Tang   FLY

Stylicins, a new family of antimicrobial peptides from the Pacific blue shrimp Litopenaeus stylirostris

(2010) J.L. Rolland et al.   MOLECULAR IMMUNOLOGY

The role of pattern-recognition receptors in innate immunity: update on Toll-like receptors

(2010) Taro Kawai et al.   NATURE IMMUNOLOGY

Biases in Illumina transcriptome sequencing caused by random hexamer priming

(2010) Kasper D. Hansen et al.   NUCLEIC ACIDS RESEARCH

A critical review of susceptibility of crustaceans to Taura syndrome, Yellowhead disease and White Spot Disease and implications of inclusion of these diseases in European legislation

(2009) G.D. Stentiford et al.   AQUACULTURE

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

The components of the Daphnia pulex immune system as revealed by complete genome sequencing

(2009) Seanna J McTaggart et al.   BMC GENOMICS

Mercury Bioavailability and Bioaccumulation in Estuarine Food Webs in the Gulf of Maine

(2009) Celia Y. Chen et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

WSSV infection activates STAT in shrimp

(2008) Wei Yu Chen et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Genetic patterns across multiple introductions of the globally invasive crab genusCarcinus

(2008) JOHN A. DARLING et al.   MOLECULAR ECOLOGY

Assessing the gene space in draft genomes

(2008) Genis Parra et al.   NUCLEIC ACIDS RESEARCH