RNA-seq reveals regional differences in transcriptome response to heat stress in the marine snailChlorostoma funebralis

Difference in Thermotolerance Between Green and Red Color Variants of the Japanese Sea Cucumber, Apostichopus japonicus Selenka: Hsp70 and Heat-Hardening Effect

(2016) Yun-Wei Dong et al.   BIOLOGICAL BULLETIN

Library construction for next-generation sequencing: Overviews and challenges

(2016) Steven R. Head et al.   BIOTECHNIQUES

Dual-specificity phosphatases: critical regulators with diverse cellular targets

(2015) Kate I. Patterson et al.   BIOCHEMICAL JOURNAL

FactoMineR: AnRPackage for Multivariate Analysis

(2015) Sébastien Lê et al.   Journal of Statistical Software

Library preparation methods for next-generation sequencing: Tone down the bias

(2014) Erwin L. van Dijk et al.   EXPERIMENTAL CELL RESEARCH

Estimating latitudinal variability in extreme heat stress on rocky intertidal shores

(2014) Justin A. Lathlean et al.   JOURNAL OF BIOGEOGRAPHY

De Novo Transcriptome Sequencing of the Snail Echinolittorina malaccana: Identification of Genes Responsive to Thermal Stress and Development of Genetic Markers for Population Studies

(2014) Wei Wang et al.   MARINE BIOTECHNOLOGY

Systematic analysis of a wasp parasitism arsenal

(2014) Gaelen R. Burke et al.   MOLECULAR ECOLOGY

Potato virus Yinfection hinders potato defence response and renders plants more vulnerable to Colorado potato beetle attack

(2014) Marko Petek et al.   MOLECULAR ECOLOGY

Carotenoid metabolic profiling and transcriptome-genome mining reveal functional equivalence among blue-pigmented copepods and appendicularia

(2014) Nazia Mojib et al.   MOLECULAR ECOLOGY

Do the same genes underlie parallel phenotypic divergence in differentLittorina saxatilispopulations?

(2014) A. M. Westram et al.   MOLECULAR ECOLOGY

Heat shock protein expression enhances heat tolerance of reptile embryos

(2014) J. Gao et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Assessing De Novo transcriptome assembly metrics for consistency and utility

(2013) Shawn T O’Neil et al.   BMC GENOMICS

Proteotoxic Stress Induces a Cell-Cycle Arrest by Stimulating Lon to Degrade the Replication Initiator DnaA

(2013) Kristina Jonas et al.   CELL

Phenotypic evidence for local adaptation to heat stress in the marine snail Chlorostoma (formerly Tegula) funebralis

(2013) Lani U. Gleason et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Thermal tolerance during early ontogeny in the common whelk Buccinum undatum (Linnaeus 1785): Bioenergetics, nurse egg partitioning and developmental success

(2013) Kathryn E. Smith et al.   JOURNAL OF SEA RESEARCH

An Exploration of Heat Tolerance in Mice Utilizing mRNA and microRNA Expression Analysis

(2013) Aminul Islam et al.   PLoS One

Genomic basis for coral resilience to climate change

(2013) Daniel J. Barshis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Unearthing the secrets of mitochondrial ROS and glutathione in bioenergetics

(2013) Ryan J. Mailloux et al.   TRENDS IN BIOCHEMICAL SCIENCES

Accuracy of RNA-Seq and its dependence on sequencing depth

(2012) Guoshuai Cai et al.   BMC BIOINFORMATICS

Investigating the molecular basis of local adaptation to thermal stress: population differences in gene expression across the transcriptome of the copepod Tigriopus californicus

(2012) Sean D Schoville et al.   BMC EVOLUTIONARY BIOLOGY

Effect of temperature, food and individual variability on the embryonic development time and fecundity of Arctodiaptomus salinus (Copepoda: Calanoida) from a shallow saline pond

(2012) Raquel Jiménez-Melero et al.   HYDROBIOLOGIA

Environmental Proteomics of the Mussel Mytilus: Implications for Tolerance to Stress and Change in Limits of Biogeographic Ranges in Response to Climate Change

(2012) L. Tomanek   INTEGRATIVE AND COMPARATIVE BIOLOGY

Life-history and thermal tolerance traits display different thermal plasticities and relationships with temperature in the marine polychaete Ophryotrocha labronica La Greca and Bacci (Dorvilleidae)

(2012) Gloria Massamba-N'Siala et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Energy homeostasis as an integrative tool for assessing limits of environmental stress tolerance in aquatic invertebrates

(2012) Inna M. Sokolova et al.   MARINE ENVIRONMENTAL RESEARCH

Exploring the limit of metazoan thermal tolerance via comparative proteomics: thermally induced changes in protein abundance by two hydrothermal vent polychaetes

(2012) G. F. Dilly et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

RNA-Seq Assembly – Are We There Yet?

(2012) Simon Schliesky et al.   Frontiers in Plant Science

Mitochondrial Thiols in Antioxidant Protection and Redox Signaling: Distinct Roles for Glutathionylation and Other Thiol Modifications

(2011) Michael P. Murphy   ANTIOXIDANTS & REDOX SIGNALING

Differential Expression of Small Heat Shock Protein Genes Hsp23 and Hsp40, and heat shock gene Hsr-omega in Fruit Flies (Drosophila melanogaster) along a Microclimatic Gradient

(2011) J. Carmel et al.   JOURNAL OF HEREDITY

Antioxidant responses of Chilo suppressalis (Lepidoptera: Pyralidae) larvae exposed to thermal stress

(2011) Yadong Cui et al.   JOURNAL OF THERMAL BIOLOGY

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

(2011) F. Sievers et al.   Molecular Systems Biology

Overcoming bias and systematic errors in next generation sequencing data

(2011) Margaret A Taub et al.   Genome Medicine

Local Adaptation in Marine Invertebrates

(2010) Eric Sanford et al.   Annual Review of Marine Science

Heat-Shock Protein 70 (Hsp70) Expression in Four Limpets of the Genus Lottia: Interspecific Variation in Constitutive and Inducible Synthesis Correlates With in situ Exposure to Heat Stress

(2010) Yunwei Dong et al.   BIOLOGICAL BULLETIN

Comparing de novo assemblers for 454 transcriptome data

(2010) Sujai Kumar et al.   BMC GENOMICS

Physiological response of the blue mussel Mytilus edulis to differences in food and temperature in the Gulf of Maine

(2010) Michael P. Lesser et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY

Sub-littoral and supra-littoral amphipods respond differently to acute thermal stress

(2010) D.S. Bedulina et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY B-BIOCHEMISTRY & MOLECULAR BIOLOGY

POTENTIAL FITNESS TRADE-OFFS FOR THERMAL TOLERANCE IN THE INTERTIDAL COPEPOD TIGRIOPUS CALIFORNICUS

(2010) Christopher S. Willett   EVOLUTION

The proteomic response of the mussel congeners Mytilus galloprovincialis and M. trossulus to acute heat stress: implications for thermal tolerance limits and metabolic costs of thermal stress

(2010) L. Tomanek et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Transcriptomic responses to heat stress in invasive and native blue mussels (genus Mytilus): molecular correlates of invasive success

(2010) B. L. Lockwood et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

The physiology of climate change: how potentials for acclimatization and genetic adaptation will determine 'winners' and 'losers'

(2010) G. N. Somero   JOURNAL OF EXPERIMENTAL BIOLOGY

Antioxidant responses of citrus red mite, Panonychus citri (McGregor) (Acari: Tetranychidae), exposed to thermal stress

(2010) Li-Hong Yang et al.   JOURNAL OF INSECT PHYSIOLOGY

Tackling the widespread and critical impact of batch effects in high-throughput data

(2010) Jeffrey T. Leek et al.   NATURE REVIEWS GENETICS

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Mitochondrial peroxiredoxin involvement in antioxidant defence and redox signalling

(2009) Andrew G. Cox et al.   BIOCHEMICAL JOURNAL

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

Transcriptional analysis of antioxidant and immune defense genes in disk abalone (Haliotis discus discus) during thermal, low-salinity and hypoxic stress

(2009) Mahanama De Zoysa et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY B-BIOCHEMISTRY & MOLECULAR BIOLOGY

Differential regulation of p53 and p21 by MKRN1 E3 ligase controls cell cycle arrest and apoptosis

(2009) Eun-Woo Lee et al.   EMBO JOURNAL

Histological Description of the Male and Female Gonads in Tegula eiseni, T. funebralis, T. aureotincta, T. gallina and T. regina from Bahia Tortugas, B.C.S., Mexico

(2009) Esperanza Ortíz-Ordoñez et al.   INTERNATIONAL JOURNAL OF MORPHOLOGY

Biogeographic variation in Mytilus galloprovincialis heat shock gene expression across the eastern Pacific range

(2009) Jessica M. Dutton et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Physiological tolerances across latitudes: thermal sensitivity of larval marine snails (Nucella spp.)

(2009) Mackenzie L. Zippay et al.   MARINE BIOLOGY

Geographic variation in the upper thermal limits of an intertidal snail: implications for climate envelope models

(2009) ESL Kuo et al.   MARINE ECOLOGY PROGRESS SERIES

Rhythms of Gene Expression in a Fluctuating Intertidal Environment

(2008) Andrew Y. Gracey et al.   CURRENT BIOLOGY

Gene expression in the intertidal mussel Mytilus californianus: physiological response to environmental factors on a biogeographic scale

(2007) SP Place et al.   MARINE ECOLOGY PROGRESS SERIES