Multifaceted Chromatin Structure and Transcription Changes in Plant Stress Response

Insight into the Role of Epigenetic Processes in Abiotic and Biotic Stress Response in Wheat and Barley

(2020) Lingyao Kong et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Reprogramming and remodeling: transcriptional and epigenetic regulation of salicylic acid-mediated plant defense

(2020) Jian Chen et al.   JOURNAL OF EXPERIMENTAL BOTANY

Chromatin regulation of somatic abiotic stress memory

(2020) Isabel Bäurle et al.   JOURNAL OF EXPERIMENTAL BOTANY

DREB1A/CBF3 is repressed by transgene-induced DNA methylation in the Arabidopsis ice1-1 mutant

(2020) Satoshi Kidokoro et al.   PLANT CELL

Natural variation in DNA methylation homeostasis and the emergence of epialleles

(2020) Yinwen Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Histone Deacetylase HDA9 With ABI4 Contributes to Abscisic Acid Homeostasis in Drought Stress Response

(2020) Dongwon Baek et al.   Frontiers in Plant Science

Interaction between metabolism and chromatin in plant models

(2020) Christian Lindermayr et al.   Molecular Metabolism

The Pattern and Function of DNA Methylation in Fungal Plant Pathogens

(2020) Chang He et al.   Microorganisms

Melatonin may increase disease resistance and flavonoid biosynthesis through effects on DNA methylation and gene expression in grape berries

(2020) Shiwei Gao et al.   BMC PLANT BIOLOGY

Plant and animal chromatin three-dimensional organization: similar structures but different functions

(2020) Pengfei Dong et al.   JOURNAL OF EXPERIMENTAL BOTANY

Changes and Associations of Genomic Transcription and Histone Methylation with Salt Stress in Castor Bean

(2020) Bing Han et al.   PLANT AND CELL PHYSIOLOGY

ARGONAUTE2 Enhances Grain Length and Salt Tolerance by Activating BIG GRAIN3 to Modulate Cytokinin Distribution in Rice

(2020) Wenchao Yin et al.   PLANT CELL

The histone-modifying complex PWR/HOS15/HD2C epigenetically regulates cold tolerance

(2020) Chae Jin Lim et al.   PLANT PHYSIOLOGY

A DNA Methylation Reader-Chaperone Regulator-Transcription Factor Complex Activates OsHKT1;5 Expression during Salinity Stress

(2020) Jie Wang et al.   PLANT CELL

Differential submergence tolerance between juvenile and adult Arabidopsis plants involves the ANAC017 transcription factor

(2020) Liem T. Bui et al.   PLANT JOURNAL

DNA demethylase ROS1 prevents inheritable DREB1A/CBF3 repression by transgene-induced promoter methylation in the Arabidopsis ice1-1 mutant

(2020) June-Sik Kim et al.   PLANT MOLECULAR BIOLOGY

Chromatin Dynamics Contribute to the Spatiotemporal Expression Pattern of Virulence Genes in a Fungal Plant Pathogen

(2020) Lukas Meile et al.   mBio

Identification and characterisation of hypomethylated DNA loci controlling quantitative resistance in Arabidopsis

(2019) Leonardo Furci et al.   eLife

Submergence and Waterlogging Stress in Plants: A Review Highlighting Research Opportunities and Understudied Aspects

(2019) Takeshi Fukao et al.   Frontiers in Plant Science

A Role for Epigenetic Regulation in the Adaptation and Stress Responses of Non-model Plants

(2019) Flávia Thiebaut et al.   Frontiers in Plant Science

Physiological, epigenetic and genetic regulation in some olive cultivars under salt stress

(2019) Soraya Mousavi et al.   Scientific Reports

Functional interplay between TFIIH and KAT2A regulates higher-order chromatin structure and class II gene expression

(2019) Jérémy Sandoz et al.   Nature Communications

HDA9-PWR-HOS15 is a core histone deacetylase complex regulating transcription and development

(2019) Kevin S Mayer et al.   PLANT PHYSIOLOGY

A Dynamic Signaling Path to Chromatin-Level Control of Plant Drought Response

(2019) Clara Bourbousse et al.   Molecular Plant

An H3K27me3 demethylase-HSFA2 regulatory loop orchestrates transgenerational thermomemory in Arabidopsis

(2019) Junzhong Liu et al.   CELL RESEARCH

Arabidopsis histone H3K4 demethylase JMJ 17 functions in dehydration stress response

(2019) Shuangzhan Huang et al.   NEW PHYTOLOGIST

DNA Methylation Analysis of the Citrullus lanatus Response to Cucumber Green Mottle Mosaic Virus Infection by Whole-Genome Bisulfite Sequencing

(2019) Sun et al.   Genes

MaMYB4 Recruits Histone Deacetylase MaHDA2 and Modulates the Expression of ω-3 Fatty Acid Desaturase Genes during Cold Stress Response in Banana Fruit

(2019) Chunbo Song et al.   PLANT AND CELL PHYSIOLOGY

ARGONAUTE1 and ARGONAUTE4 regulate gene expression and hypoxia tolerance

(2019) Elena Loreti et al.   PLANT PHYSIOLOGY

The repressive role of Arabidopsis H2A.Z in transcriptional regulation depends on AtBMI1 activity

(2019) Ángeles Gómez-Zambrano et al.   Nature Communications

MYB96 recruits the HDA15 protein to suppress negative regulators of ABA signaling in Arabidopsis

(2019) Hong Gil Lee et al.   Nature Communications

Improved drought stress tolerance in Arabidopsis by CRISPR/dCas9 fusion with a Histone AcetylTransferase

(2019) Joaquin Felipe Roca Paixão et al.   Scientific Reports

Chromatin Remodeling and Epigenetic Regulation in Plant DNA Damage Repair

(2019) Jin-Hong Kim   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

CRISPR-based tools for targeted transcriptional and epigenetic regulation in plants

(2019) Joanne E. Lee et al.   PLoS One

Continuous salt stress-induced long non-coding RNAs and DNA methylation patterns in soybean roots

(2019) Rui Chen et al.   BMC GENOMICS

Establishment, maintenance, and biological roles of non-CG methylation in plants

(2019) Sunil K. Kenchanmane Raju et al.   Essays in Biochemistry

The Methylation Patterns and Transcriptional Responses to Chilling Stress at the Seedling Stage in Rice

(2019) Hui Guo et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Epigenetic signatures of stress adaptation and flowering regulation in response to extended drought and recovery in Zea mays

(2019) Cristian Forestan et al.   PLANT CELL AND ENVIRONMENT

Histone modifications form epigenetic regulatory networks to regulate abiotic stress response

(2019) Minoru Ueda et al.   PLANT PHYSIOLOGY

Transcriptome Analysis of the Hierarchical Response of Histone Deacetylase Proteins That Respond in an Antagonistic Manner to Salinity Stress

(2019) Minoru Ueda et al.   Frontiers in Plant Science

DNA Methylation: Toward Crop Disease Resistance Improvement

(2019) Soodeh Tirnaz et al.   TRENDS IN PLANT SCIENCE

The Histone Demethylase IBM1 Positively Regulates Arabidopsis Immunity by Control of Defense Gene Expression

(2019) Ching Chan et al.   Frontiers in Plant Science

Genome-wide DNA Methylation analysis in response to salinity in the model plant caliph medic (Medicago truncatula)

(2018) Mahmoud W. Yaish et al.   BMC GENOMICS

Arabidopsis ARGONAUTE 1 Binds Chromatin to Promote Gene Transcription in Response to Hormones and Stresses

(2018) Chang Liu et al.   DEVELOPMENTAL CELL

The DNA Methylome and Association of Differentially Methylated Regions with Differential Gene Expression during Heat Stress in Brassica rapa

(2018) Gaofeng Liu et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Ubiquitylation in plants: signaling hub for the integration of environmental signals

(2018) Alexandra Miricescu et al.   JOURNAL OF EXPERIMENTAL BOTANY

Defense Response to Pathogens Through Epigenetic Regulation in Rice

(2018) Trung Viet Hoang et al.   JOURNAL OF PLANT BIOLOGY

The Nucleosome Remodeling and Deacetylation Complex Modulates Chromatin Structure at Sites of Active Transcription to Fine-Tune Gene Expression

(2018) Susanne Bornelöv et al.   MOLECULAR CELL

Dynamics and function of DNA methylation in plants

(2018) Huiming Zhang et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness

(2018) Lorenzo Pedrotti et al.   PLANT CELL

Epigenetic switch from repressive to permissive chromatin in response to cold stress

(2018) Junghoon Park et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Plant Immunity: From Signaling to Epigenetic Control of Defense

(2018) Juan S. Ramirez-Prado et al.   TRENDS IN PLANT SCIENCE

Modify the Histone to Win the Battle: Chromatin Dynamics in Plant–Pathogen Interactions

(2018) Juan S. Ramirez-Prado et al.   Frontiers in Plant Science

Histone Modifications: Insights into Their Influence on Gene Expression

(2018) Bruce Stillman   CELL

DNA methylation dynamics during the interaction of wheat progenitor Aegilops tauschii with the obligate biotrophic fungus Blumeria graminis f. sp. tritici

(2018) Shuaifeng Geng et al.   NEW PHYTOLOGIST

INDETERMINATE SPIKELET 1 recruits histone deacetylase and a transcriptional repression complex to regulate rice salt tolerance

(2018) Xiliu Cheng et al.   PLANT PHYSIOLOGY

The contrasting response to drought and waterlogging is underpinned by divergent DNA methylation programs associated with transcript accumulation in sesame

(2018) Dossa Komivi et al.   PLANT SCIENCE

The relationship between transgenerational acquired resistance and global DNA methylation in Arabidopsis

(2018) Joost H. M. Stassen et al.   Scientific Reports

Regulation of Plant Growth and Development: A Review From a Chromatin Remodeling Perspective

(2018) Simon P. Ojolo et al.   Frontiers in Plant Science

Histone Acetylation Cooperating with AREB1 Transcription Factor Regulates Drought Response and Tolerance in Populus trichocarpa

(2018) Shuang Li et al.   PLANT CELL

Histone acetylation modification affects cell wall degradation and aerenchyma formation in wheat seminal roots under waterlogging

(2018) Chengyang Li et al.   PLANT GROWTH REGULATION

Histone acetyltransferase GCN 5 contributes to cell wall integrity and salt stress tolerance by altering the expression of cellulose synthesis genes

(2018) Mei Zheng et al.   PLANT JOURNAL

Cold acclimation alters DNA methylation patterns and confers tolerance to heat and increases growth rate in Brassica rapa

(2017) Tongkun Liu et al.   JOURNAL OF EXPERIMENTAL BOTANY

Role of epigenetics in crop improvement: Water and heat stress

(2017) Saurabh Saraswat et al.   JOURNAL OF PLANT BIOLOGY

The Arabidopsis Chromatin-Remodeling Factor CHR5 Regulates Plant Immune Responses and Nucleosome Occupancy

(2017) Baohong Zou et al.   PLANT AND CELL PHYSIOLOGY

Histone H2B monoubiquitination regulates salt stress-induced microtubule depolymerization in Arabidopsis

(2017) Sa Zhou et al.   PLANT CELL AND ENVIRONMENT

HISTONE DEACETYLASE 6 represses pathogen defence responses in Arabidopsis thaliana

(2017) Yizhong Wang et al.   PLANT CELL AND ENVIRONMENT

JMJ27, an Arabidopsis H3K9 histone demethylase, modulates defense against Pseudomonas syringae and flowering time

(2017) Aditya Dutta et al.   PLANT JOURNAL

The Distinct Roles of Class I and II RPD3-Like Histone Deacetylases in Salinity Stress Response

(2017) Minoru Ueda et al.   PLANT PHYSIOLOGY

The Arabidopsis DNA Methylome Is Stable under Transgenerational Drought Stress

(2017) Diep R. Ganguly et al.   PLANT PHYSIOLOGY

Fungal-induced protein hyperacetylation in maize identified by acetylome profiling

(2017) Justin W. Walley et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Epigenetic regulation of antagonistic receptors confers rice blast resistance with yield balance

(2017) Yiwen Deng et al.   SCIENCE

Epigenetic Control of Plant Cold Responses

(2017) Aditya Banerjee et al.   Frontiers in Plant Science

Drought Stress-Related Physiological Changes and Histone Modifications in Barley Primary Leaves at HSP17 Gene

(2017) Aslihan Temel et al.   Agronomy-Basel

Recurrent water deficit causes epigenetic and hormonal changes in citrus plants

(2017) Diana Matos Neves et al.   Scientific Reports

Depicting how Eucalyptus globulus survives drought: involvement of redox and DNA methylation events

(2016) Barbara Correia et al.   FUNCTIONAL PLANT BIOLOGY

Histone deacetylase HDA9 negatively regulates salt and drought stress responsiveness in Arabidopsis

(2016) Yu Zheng et al.   JOURNAL OF EXPERIMENTAL BOTANY

Characterization of histone modifications associated with DNA damage repair genes upon exposure to gamma rays in Arabidopsis seedlings

(2016) Suvendu Mondal et al.   JOURNAL OF RADIATION RESEARCH

Epigenetic Mechanisms: An Emerging Player in Plant-Microbe Interactions

(2016) Qian-Hao Zhu et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Global regulation of plant immunity by histone lysine methyl transferases

(2016) Sanghun Lee et al.   PLANT CELL

DNA Methylation Influences the Expression of DICER-LIKE4 Isoforms, Which Encode Proteins of Alternative Localization and Function

(2016) Nathan Pumplin et al.   PLANT CELL

Variation of DNA methylation patterns associated with gene expression in rice (Oryza sativa) exposed to cadmium

(2016) Sheng Jun Feng et al.   PLANT CELL AND ENVIRONMENT

HD2C histone deacetylase and a SWI/SNF chromatin remodelling complex interact and both are involved in mediating the heat stress response inArabidopsis

(2016) Daniel Buszewicz et al.   PLANT CELL AND ENVIRONMENT

The role of DNA (de)methylation in immune responsiveness of Arabidopsis

(2016) Ana López Sánchez et al.   PLANT JOURNAL

Nitric Oxide Modulates Histone Acetylation at Stress Genes by Inhibition of Histone Deacetylases

(2016) Alexander Mengel et al.   PLANT PHYSIOLOGY

Light affects salt stress-induced transcriptional memory ofP5CS1inArabidopsis

(2016) Xuan Jun Feng et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Hyperosmotic stress memory in Arabidopsis is mediated by distinct epigenetically labile sites in the genome and is restricted in the male germline by DNA glycosylase activity

(2016) Anjar Wibowo et al.   eLife

Arabidopsis FORGETTER1 mediates stress-induced chromatin memory through nucleosome remodeling

(2016) Krzysztof Brzezinka et al.   eLife

Genome-Wide Differences in DNA Methylation Changes in Two Contrasting Rice Genotypes in Response to Drought Conditions

(2016) Wensheng Wang et al.   Frontiers in Plant Science

Epigenetic Control of Defense Signaling and Priming in Plants

(2016) Nino A. Espinas et al.   Frontiers in Plant Science

Reconsidering plant memory: Intersections between stress recovery, RNA turnover, and epigenetics

(2016) P. A. Crisp et al.   Science Advances

JMJ704 positively regulates rice defense response against Xanthomonas oryzae pv. oryzae infection via reducing H3K4me2/3 associated with negative disease resistance regulators

(2015) Yuxuan Hou et al.   BMC PLANT BIOLOGY

Stress-induced structural changes in plant chromatin

(2015) Aline V Probst et al.   CURRENT OPINION IN PLANT BIOLOGY

A hit-and-run heat shock factor governs sustained histone methylation and transcriptional stress memory

(2015) J. La mke et al.   EMBO JOURNAL

BRHIS1 suppresses rice innate immunity through binding to monoubiquitinated H2A and H2B variants

(2015) X. Li et al.   EMBO REPORTS

Salt-induced transcription factorMYB74is regulated by the RNA-directed DNA methylation pathway inArabidopsis

(2015) Rui Xu et al.   JOURNAL OF EXPERIMENTAL BOTANY

Histone acetyltransferase GCN5 is essential for heat stress-responsive gene activation and thermotolerance in Arabidopsis

(2015) Zhaorong Hu et al.   PLANT JOURNAL

DNA Damage Repair in the Context of Plant Chromatin

(2015) Mattia Donà et al.   PLANT PHYSIOLOGY

DNA Methylation within Transcribed Regions

(2015) Taiko K. To et al.   PLANT PHYSIOLOGY

High-temperature effect on genes engaged in DNA methylation and affected by DNA methylation in Arabidopsis

(2015) Mladen Naydenov et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Chromatin resetting mechanisms preventing transgenerational inheritance of epigenetic states

(2015) Mayumi Iwasaki   Frontiers in Plant Science

Chromatin changes in response to drought, salinity, heat, and cold stresses in plants

(2015) Jong-Myong Kim et al.   Frontiers in Plant Science

Genetic and epigenetic control of plant heat responses

(2015) Junzhong Liu et al.   Frontiers in Plant Science

Chromatin versus pathogens: the function of epigenetics in plant immunity

(2015) Bo Ding et al.   Frontiers in Plant Science

Divergent DNA methylation patterns associated with gene expression in rice cultivars with contrasting drought and salinity stress response

(2015) Rohini Garg et al.   Scientific Reports

Histone acetylation associated up-regulation of the cell wall related genes is involved in salt stress induced maize root swelling

(2014) Hui Li et al.   BMC PLANT BIOLOGY

Chromatin structure and gene expression changes associated with loss of MOP1 activity inZea mays

(2014) Thelma F Madzima et al.   Epigenetics

Transcriptional Repression by Histone Deacetylases in Plants

(2014) Xuncheng Liu et al.   Molecular Plant

H3K27me3 and H3K4me3 Chromatin Environment at Super-Induced Dehydration Stress Memory Genes of Arabidopsis thaliana

(2014) Ning Liu et al.   Molecular Plant

Epigenetic Memory for Stress Response and Adaptation in Plants

(2014) Tetsu Kinoshita et al.   PLANT AND CELL PHYSIOLOGY

Histone chaperone ASF1 is involved in gene transcription activation in response to heat stress inArabidopsis thaliana

(2014) MINJIE WENG et al.   PLANT CELL AND ENVIRONMENT

Differential Acetylation of Histone H3 at the Regulatory Region of OsDREB1b Promoter Facilitates Chromatin Remodelling and Transcription Activation during Cold Stress

(2014) Dipan Roy et al.   PLoS One

Epigenetic Regulation in Plants

(2014) C. S. Pikaard et al.   Cold Spring Harbor Perspectives in Biology

Heat-Induced Release of Epigenetic Silencing Reveals the Concealed Role of an Imprinted Plant Gene

(2014) Diego H. Sanchez et al.   PLoS Genetics

Over-expression of histone H3K4 demethylase gene JMJ15 enhances salt tolerance in Arabidopsis

(2014) Yuan Shen et al.   Frontiers in Plant Science

Epigenetic Dynamics: Role of Epimarks and Underlying Machinery in Plants Exposed to Abiotic Stress

(2014) Manoj Kumar Dhar et al.   International Journal of Genomics

Elongator subunit 3 positively regulates plant immunity through its histone acetyltransferase and radical S-adenosylmethionine domains

(2013) Christopher T DeFraia et al.   BMC PLANT BIOLOGY

Role of chromatin in water stress responses in plants

(2013) Soon-Ki Han et al.   JOURNAL OF EXPERIMENTAL BOTANY

The RdDM Pathway Is Required for Basal Heat Tolerance in Arabidopsis

(2013) Olga V. Popova et al.   Molecular Plant

The Arabidopsis Elongator Complex Subunit2 Epigenetically Regulates Plant Immune Responses

(2013) Y. Wang et al.   PLANT CELL

Regulation of Transcription of Nucleotide-Binding Leucine-Rich Repeat-Encoding Genes SNC1 and RPP4 via H3K4 Trimethylation

(2013) S. Xia et al.   PLANT PHYSIOLOGY

Genome-Wide Quantitative Identification of DNA Differentially Methylated Sites in Arabidopsis Seedlings Growing at Different Water Potential

(2013) Alejandro C. Colaneri et al.   PLoS One

Linking Stochastic Fluctuations in Chromatin Structure and Gene Expression

(2013) Christopher R. Brown et al.   PLOS BIOLOGY

Distal chromatin structure influences local nucleosome positions and gene expression

(2012) An Jansen et al.   NUCLEIC ACIDS RESEARCH

Stress-Induced Chromatin Changes: A Critical View on Their Heritability

(2012) A. Pecinka et al.   PLANT AND CELL PHYSIOLOGY

DNA Methylation in Plants: Relationship to Small RNAs and Histone Modifications, and Functions in Transposon Inactivation

(2012) H. Saze et al.   PLANT AND CELL PHYSIOLOGY

Transition of Chromatin Status During the Process of Recovery from Drought Stress in Arabidopsis thaliana

(2012) Jong-Myong Kim et al.   PLANT AND CELL PHYSIOLOGY

The Progeny of Arabidopsis thaliana Plants Exposed to Salt Exhibit Changes in DNA Methylation, Histone Modifications and Gene Expression

(2012) Andriy Bilichak et al.   PLoS One

Salt Stress Induced Variation in DNA Methylation Pattern and Its Influence on Gene Expression in Contrasting Rice Genotypes

(2012) Ratna Karan et al.   PLoS One

The Dynamic Changes of DNA Methylation and Histone Modifications of Salt Responsive Transcription Factor Genes in Soybean

(2012) Yuguang Song et al.   PLoS One

Widespread dynamic DNA methylation in response to biotic stress

(2012) R. H. Dowen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transgenerational defense induction and epigenetic inheritance in plants

(2012) Liza M. Holeski et al.   TRENDS IN ECOLOGY & EVOLUTION

Chromatin modifications and remodeling in plant abiotic stress responses

(2011) Ming Luo et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

ArabidopsisFloral Initiator SKB1 Confers High Salt Tolerance by Regulating Transcription and Pre-mRNA Splicing through Altering Histone H4R3 and Small Nuclear Ribonucleoprotein LSM4 Methylation

(2011) Zhaoliang Zhang et al.   PLANT CELL

Chromatin Configuration as a Battlefield in Plant-Bacteria Interactions

(2011) K.-W. Ma et al.   PLANT PHYSIOLOGY

Dynamic Changes in Genome-Wide Histone H3 Lysine 4 Methylation Patterns in Response to Dehydration Stress in Arabidopsis thaliana

(2010) Karin van Dijk et al.   BMC PLANT BIOLOGY

Chromatin modification acts as a memory for systemic acquired resistance in the plant stress response

(2010) Michal Jaskiewicz et al.   EMBO REPORTS

The role of small non-coding RNAs in genome stability and chromatin organization

(2010) J. C. van Wolfswinkel et al.   JOURNAL OF CELL SCIENCE

Drought-induced site-specific DNA methylation and its association with drought tolerance in rice (Oryza sativa L.)

(2010) Wen-Sheng Wang et al.   JOURNAL OF EXPERIMENTAL BOTANY

The Chromatin Remodeler SPLAYED Regulates Specific Stress Signaling Pathways

(2008) Justin W. Walley et al.   PLoS Pathogens