Variation of DNA methylation patterns associated with gene expression in rice (Oryza sativa) exposed to cadmium

Regulatory link between DNA methylation and active demethylation inArabidopsis

(2015) Mingguang Lei et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

DNA Methylation: Insights into Human Evolution

(2015) Irene Hernando-Herraez et al.   PLoS Genetics

Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice

(2015) V. Jisha et al.   PLoS One

Integrated analysis of miRNA and mRNA expression profiles in response to Cd exposure in rice seedlings

(2014) Mingfeng Tang et al.   BMC GENOMICS

Mutation of the RDR1 gene caused genome-wide changes in gene expression, regional variation in small RNA clusters and localized alteration in DNA methylation in rice

(2014) Ningning Wang et al.   BMC PLANT BIOLOGY

Comprehensive gene expression analysis of the DNA (cytosine-5) methyltransferase family in rice (Oryza sativa L.)

(2014) F. Ahmad et al.   GENETICS AND MOLECULAR RESEARCH

Overexpression of OsHMA3 enhances Cd tolerance and expression of Zn transporter genes in rice

(2014) Akimasa Sasaki et al.   JOURNAL OF EXPERIMENTAL BOTANY

Epigenetic Memory for Stress Response and Adaptation in Plants

(2014) Tetsu Kinoshita et al.   PLANT AND CELL PHYSIOLOGY

Genome-wide identification and expression profiling of DNA methyltransferase gene family in maize

(2014) Yexiong Qian et al.   PLANT CELL REPORTS

Genome-Wide Transcriptome Analysis Reveals that Cadmium Stress Signaling Controls the Expression of Genes in Drought Stress Signal Pathways in Rice

(2014) Youko Oono et al.   PLoS One

Mutation of a major CG methylase in rice causes genome-wide hypomethylation, dysregulated genome expression, and seedling lethality

(2014) L. Hu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Iron deficiency responses in rice roots

(2014) Takanori Kobayashi et al.   Rice

Comprehensive Analysis of Silencing Mutants Reveals Complex Regulation of the Arabidopsis Methylome

(2013) Hume Stroud et al.   CELL

Rice epigenomics and epigenetics: challenges and opportunities

(2013) Xiangsong Chen et al.   CURRENT OPINION IN PLANT BIOLOGY

Epigenetic differences between shoots and roots inArabidopsisreveals tissue-specific regulation

(2013) Nicolas Widman et al.   Epigenetics

Molecular dissection of mercury-responsive transcriptome and sense/antisense genes in Medicago truncatula

(2013) Zhao Sheng Zhou et al.   JOURNAL OF HAZARDOUS MATERIALS

miR395 is involved in detoxification of cadmium in Brassica napus

(2013) Liu Wei Zhang et al.   JOURNAL OF HAZARDOUS MATERIALS

A potential role of microRNAs in plant response to metal toxicity

(2013) Zhi Min Yang et al.   Metallomics

Arabidopsis HY1 Confers Cadmium Tolerance by Decreasing Nitric Oxide Production and Improving Iron Homeostasis

(2013) Bin Han et al.   Molecular Plant

Single-base resolution methylomes of tomato fruit development reveal epigenome modifications associated with ripening

(2013) Silin Zhong et al.   NATURE BIOTECHNOLOGY

Spatial transcriptomes of iron-deficient and cadmium-stressed rice

(2013) Yuko Ogo et al.   NEW PHYTOLOGIST

Preferential Delivery of Zinc to Developing Tissues in Rice Is Mediated by P-Type Heavy Metal ATPase OsHMA2

(2013) N. Yamaji et al.   PLANT PHYSIOLOGY

Use of MSAP Markers to Analyse the Effects of Salt Stress on DNA Methylation in Rapeseed (Brassica napus var. oleifera)

(2013) Gianpiero Marconi et al.   PLoS One

Structural Basis of a Histone H3 Lysine 4 Demethylase Required for Stem Elongation in Rice

(2013) Qingfeng Chen et al.   PLoS Genetics

Single-base resolution maps of cultivated and wild rice methylomes and regulatory roles of DNA methylation in plant gene expression

(2012) Xin Li et al.   BMC GENOMICS

Cadmium and Its Epigenetic Effects

(2012) B. Wang et al.   CURRENT MEDICINAL CHEMISTRY

The Histone Methyltransferase SDG724 Mediates H3K36me2/3 Deposition at MADS50 and RFT1 and Promotes Flowering in Rice

(2012) C. Sun et al.   PLANT CELL

Nramp5 Is a Major Transporter Responsible for Manganese and Cadmium Uptake in Rice

(2012) A. Sasaki et al.   PLANT CELL

The OsHMA2 transporter is involved in root-to-shoot translocation of Zn and Cd in rice

(2012) RYUICHI TAKAHASHI et al.   PLANT CELL AND ENVIRONMENT

Targeted disruption of an orthologue of DOMAINS REARRANGED METHYLASE 2, OsDRM2, impairs the growth of rice plants by abnormal DNA methylation

(2012) Satoru Moritoh et al.   PLANT JOURNAL

Salt Stress Induced Variation in DNA Methylation Pattern and Its Influence on Gene Expression in Contrasting Rice Genotypes

(2012) Ratna Karan et al.   PLoS One

Transgenerational Inheritance of Modified DNA Methylation Patterns and Enhanced Tolerance Induced by Heavy Metal Stress in Rice (Oryza sativa L.)

(2012) Xiufang Ou et al.   PLoS One

Ion-beam irradiation, gene identification, and marker-assisted breeding in the development of low-cadmium rice

(2012) S. Ishikawa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Plant science: the key to preventing slow cadmium poisoning

(2012) Stephan Clemens et al.   TRENDS IN PLANT SCIENCE

Epigenetics in plant development and response to stress

(2011) Gideon Grafi   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

RNA-directed DNA methylation

(2011) Huiming Zhang et al.   CURRENT OPINION IN PLANT BIOLOGY

Microarray-based analysis of cadmium-responsive microRNAs in rice (Oryza sativa)

(2011) Yanfei Ding et al.   JOURNAL OF EXPERIMENTAL BOTANY

In Posidonia oceanica cadmium induces changes in DNA methylation and chromatin patterning

(2011) Maria Greco et al.   JOURNAL OF EXPERIMENTAL BOTANY

Mutations in Rice (Oryza sativa) Heavy Metal ATPase 2 (OsHMA2) Restrict the Translocation of Zinc and Cadmium

(2011) Namiko Satoh-Nagasawa et al.   PLANT AND CELL PHYSIOLOGY

Expression of a Brassica napus heme oxygenase confers plant tolerance to mercury toxicity

(2011) QI SHEN et al.   PLANT CELL AND ENVIRONMENT

Genome-wide identification of Medicago truncatula microRNAs and their targets reveals their differential regulation by heavy metal

(2011) ZHAO SHENG ZHOU et al.   PLANT CELL AND ENVIRONMENT

H3K36 methylation is critical for brassinosteroid-regulated plant growth and development in rice

(2011) Pengfei Sui et al.   PLANT JOURNAL

Co-Overexpression FIT with AtbHLH38 or AtbHLH39 in Arabidopsis-Enhanced Cadmium Tolerance via Increased Cadmium Sequestration in Roots and Improved Iron Homeostasis of Shoots

(2011) H. Wu et al.   PLANT PHYSIOLOGY

Selenium and spermine alleviate cadmium induced toxicity in the red seaweed Gracilaria dura by regulating antioxidants and DNA methylation

(2011) Manoj Kumar et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Low-affinity cation transporter (OsLCT1) regulates cadmium transport into rice grains

(2011) S. Uraguchi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Differentiation of epigenetic modifications between transposons and genes

(2010) Hidetoshi Saze et al.   CURRENT OPINION IN PLANT BIOLOGY

Over-expression of sly-miR156a in tomato results in multiple vegetative and reproductive trait alterations and partial phenocopy of thesftmutant

(2010) Xiaohui Zhang et al.   FEBS LETTERS

Drought-induced site-specific DNA methylation and its association with drought tolerance in rice (Oryza sativa L.)

(2010) Wen-Sheng Wang et al.   JOURNAL OF EXPERIMENTAL BOTANY

DNA cytosine methylation in plant development

(2010) Meishan Zhang et al.   Journal of Genetics and Genomics

DNA Methylation Mediated by a MicroRNA Pathway

(2010) Liang Wu et al.   MOLECULAR CELL

Rice SUVH Histone Methyltransferase Genes Display Specific Functions in Chromatin Modification and Retrotransposon Repression

(2010) Fu-Jun Qin et al.   Molecular Plant

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

OsHMA3, a P1B-type of ATPase affects root-to-shoot cadmium translocation in rice by mediating efflux into vacuoles

(2010) Hidenori Miyadate et al.   NEW PHYTOLOGIST

Genome-wide mapping of cytosine methylation revealed dynamic DNA methylation patterns associated with genes and centromeres in rice

(2010) Huihuang Yan et al.   PLANT JOURNAL

Local DNA hypomethylation activates genes in rice endosperm

(2010) A. Zemach et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Gene limiting cadmium accumulation in rice

(2010) D. Ueno et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The NRAMP6 metal transporter contributes to cadmium toxicity

(2009) Rémy Cailliatte et al.   BIOCHEMICAL JOURNAL

Tissue culture-induced transpositional activity of mPing is correlated with cytosine methylation in rice

(2009) Frédéric Ngezahayo et al.   BMC PLANT BIOLOGY

Human DNA methylomes at base resolution show widespread epigenomic differences

(2009) Ryan Lister et al.   NATURE

Molecular mechanisms of metal hyperaccumulation in plants

(2009) Nathalie Verbruggen et al.   NEW PHYTOLOGIST

Time course analysis of gene regulation under cadmium stress in rice

(2009) Ippei Ogawa et al.   PLANT AND SOIL

Rice MicroRNA Effector Complexes and Targets

(2009) L. Wu et al.   PLANT CELL

Homologous recombination-mediated knock-in targeting of theMET1agene for a maintenance DNA methyltransferase reproducibly reveals dosage-dependent spatiotemporal gene expression in rice

(2009) Takaki Yamauchi et al.   PLANT JOURNAL

Involvement of DNA hypermethylation in down-regulation of the zinc transporter ZIP8 in cadmium-resistant metallothionein-null cells

(2009) Hitomi Fujishiro et al.   TOXICOLOGY AND APPLIED PHARMACOLOGY

Alternative splicing of the rice OsMET1 genes encoding maintenance DNA methyltransferase

(2008) Takaki Yamauchi et al.   JOURNAL OF PLANT PHYSIOLOGY

Spaceflight induces both transient and heritable alterations in DNA methylation and gene expression in rice (Oryza sativa L.)

(2008) Xiufang Ou et al.   MUTATION RESEARCH-FUNDAMENTAL AND MOLECULAR MECHANISMS OF MUTAGENESIS

Manganese Efficiency in Barley: Identification and Characterization of the Metal Ion Transporter HvIRT1

(2008) P. Pedas et al.   PLANT PHYSIOLOGY

Rice jmjC domain-containing gene JMJ706 encodes H3K9 demethylase required for floral organ development

(2008) Q. Sun et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Synthesis of nicotianamine and deoxymugineic acid is regulated by OsIRO2 in Zn excess rice plants

(2008) Yasuhiro Ishimaru et al.   SOIL SCIENCE AND PLANT NUTRITION

Global DNA hypomethylation, rather than reactive oxygen species (ROS), a potential facilitator of cadmium-stimulated K562 cell proliferation

(2008) Dejun Huang et al.   TOXICOLOGY LETTERS

Effects of long-term low-dose cadmium exposure on genomic DNA methylation in human embryo lung fibroblast cells

(2007) Gaofeng Jiang et al.   TOXICOLOGY