Role of chromatin in water stress responses in plants

Readout of Epigenetic Modifications

(2013) Dinshaw J. Patel et al.   Annual Review of Biochemistry

Long noncoding RNAs: New regulators in plant development

(2013) Yu-Chan Zhang et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

The Arabidopsis Nucleosome Remodeler DDM1 Allows DNA Methyltransferases to Access H1-Containing Heterochromatin

(2013) Assaf Zemach et al.   CELL

Mechanisms and Functions of ATP-Dependent Chromatin-Remodeling Enzymes

(2013) Geeta J. Narlikar et al.   CELL

Chromatin: Receiver and Quarterback for Cellular Signals

(2013) David G. Johnson et al.   CELL

VAL- and AtBMI1-Mediated H2Aub Initiate the Switch from Embryonic to Postgerminative Growth in Arabidopsis

(2013) Chao Yang et al.   CURRENT BIOLOGY

Chromatin and signaling

(2013) Tamaki Suganuma et al.   CURRENT OPINION IN CELL BIOLOGY

Histone variants in pluripotency and disease

(2013) P. J. Skene et al.   DEVELOPMENT

Epigenome-wide inheritance of cytosine methylation variants in a recombinant inbred population

(2013) R. J. Schmitz et al.   GENOME RESEARCH

Transgenerational, Dynamic Methylation of Stomata Genes in Response to Low Relative Humidity

(2013) Penny Tricker et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Local inhibition of nitrogen fixation and nodule metabolism in drought-stressed soybean

(2013) Erena Gil-Quintana et al.   JOURNAL OF EXPERIMENTAL BOTANY

Emerging roles of microRNAs in the mediation of drought stress response in plants

(2013) Yanfei Ding et al.   JOURNAL OF EXPERIMENTAL BOTANY

Occupying Chromatin: Polycomb Mechanisms for Getting to Genomic Targets, Stopping Transcriptional Traffic, and Staying Put

(2013) Jeffrey A. Simon et al.   MOLECULAR CELL

RNA interference in the nucleus: roles for small RNAs in transcription, epigenetics and beyond

(2013) Stephane E. Castel et al.   NATURE REVIEWS GENETICS

Transgenerational epigenetic inheritance: how important is it?

(2013) Ueli Grossniklaus et al.   NATURE REVIEWS GENETICS

Emerging roles for chromatin as a signal integration and storage platform

(2013) Aimee I. Badeaux et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Histone chaperones in nucleosome assembly and human disease

(2013) Rebecca J Burgess et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Regulation of nucleosome dynamics by histone modifications

(2013) Gabriel E Zentner et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

HISTONE DEACETYLASE19 Interacts with HSL1 and Participates in the Repression of Seed Maturation Genes inArabidopsisSeedlings

(2013) Yi Zhou et al.   PLANT CELL

Arabidopsis Histone Methylase CAU1/PRMT5/SKB1 Acts as an Epigenetic Suppressor of the Calcium Signaling Gene CAS to Mediate Stomatal Closure in Response to Extracellular Calcium

(2013) Y.-L. Fu et al.   PLANT CELL

ArabidopsisChromatin Remodeling Factor PICKLE Interacts with Transcription Factor HY5 to Regulate Hypocotyl Cell Elongation

(2013) Yanjun Jing et al.   PLANT CELL

Epigenetic mechanisms of plant stress responses and adaptation

(2013) Pranav Pankaj Sahu et al.   PLANT CELL REPORTS

EMBRYONIC FLOWER1 and ULTRAPETALA1 Act Antagonistically on Arabidopsis Development and Stress Response

(2013) L. Pu et al.   PLANT PHYSIOLOGY

Analysis of rice Snf2 family proteins and their potential roles in epigenetic regulation

(2013) Yongfeng Hu et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Genome-Wide Quantitative Identification of DNA Differentially Methylated Sites in Arabidopsis Seedlings Growing at Different Water Potential

(2013) Alejandro C. Colaneri et al.   PLoS One

Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action

(2013) P. Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genetics and Phosphoproteomics Reveal a Protein Phosphorylation Network in the Abscisic Acid Signaling Pathway in Arabidopsis thaliana

(2013) T. Umezawa et al.   Science Signaling

PICKLE is a CHD subfamily II ATP-dependent chromatin remodeling factor

(2012) Kwok Ki Ho et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Effects of abiotic stress on plants: a systems biology perspective

(2012) Grant R Cramer et al.   BMC PLANT BIOLOGY

TrxG and PcG Proteins but Not Methylated Histones Remain Associated with DNA through Replication

(2012) Svetlana Petruk et al.   CELL

Small RNAs in development – insights from plants

(2012) Xuemei Chen   CURRENT OPINION IN GENETICS & DEVELOPMENT

Chromatin organization and transcriptional regulation

(2012) Michael R Hübner et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Epigenetic responses to stress: triple defense?

(2012) Ruben Gutzat et al.   CURRENT OPINION IN PLANT BIOLOGY

The role of long non-coding RNA in transcriptional gene silencing

(2012) Andrzej T Wierzbicki   CURRENT OPINION IN PLANT BIOLOGY

Epigenetic variation: origin and transgenerational inheritance

(2012) Claude Becker et al.   CURRENT OPINION IN PLANT BIOLOGY

PHENOTYPIC PLASTICITY FACILITATES MUTATIONAL VARIANCE, GENETIC VARIANCE, AND EVOLVABILITY ALONG THE MAJOR AXIS OF ENVIRONMENTAL VARIATION

(2012) Jeremy A. Draghi et al.   EVOLUTION

Contrapuntal role of ABA: Does it mediate stress tolerance or plant growth retardation under long-term drought stress?

(2012) Nese Sreenivasulu et al.   GENE

In vivo Polycomb kinetics and mitotic chromatin binding distinguish stem cells from differentiated cells

(2012) J. P. Fonseca et al.   GENES & DEVELOPMENT

Vernalization - a cold-induced epigenetic switch

(2012) J. Song et al.   JOURNAL OF CELL SCIENCE

Manipulating resource allocation in plants

(2012) E. Bennett et al.   JOURNAL OF EXPERIMENTAL BOTANY

Vernalization-mediated chromatin changes

(2012) Brett R. Zografos et al.   JOURNAL OF EXPERIMENTAL BOTANY

Low relative humidity triggers RNA-directed de novo DNA methylation and suppression of genes controlling stomatal development

(2012) Penny J. Tricker et al.   JOURNAL OF EXPERIMENTAL BOTANY

HD2C interacts with HDA6 and is involved in ABA and salt stress response in Arabidopsis

(2012) Ming Luo et al.   JOURNAL OF EXPERIMENTAL BOTANY

Plant PRMTs Broaden the Scope of Arginine Methylation

(2012) Ayaz Ahmad et al.   Journal of Genetics and Genomics

A Bridging Model for Persistence of a Polycomb Group Protein Complex through DNA Replication In Vitro

(2012) Stanley M. Lo et al.   MOLECULAR CELL

Functions of DNA methylation: islands, start sites, gene bodies and beyond

(2012) Peter A. Jones   NATURE REVIEWS GENETICS

Epigenetic variation creates potential for evolution of plant phenotypic plasticity

(2012) Yuan-Ye Zhang et al.   NEW PHYTOLOGIST

Stress-Induced Chromatin Changes: A Critical View on Their Heritability

(2012) A. Pecinka et al.   PLANT AND CELL PHYSIOLOGY

DNA Methylation in Plants: Relationship to Small RNAs and Histone Modifications, and Functions in Transposon Inactivation

(2012) H. Saze et al.   PLANT AND CELL PHYSIOLOGY

Transition of Chromatin Status During the Process of Recovery from Drought Stress in Arabidopsis thaliana

(2012) Jong-Myong Kim et al.   PLANT AND CELL PHYSIOLOGY

The SWI2/SNF2 Chromatin Remodeling ATPase BRAHMA Represses Abscisic Acid Responses in the Absence of the Stress Stimulus in Arabidopsis

(2012) S.-K. Han et al.   PLANT CELL

Mutations in two non-canonical Arabidopsis SWI2/SNF2 chromatin remodeling ATPases cause embryogenesis and stem cell maintenance defects

(2012) Yi Sang et al.   PLANT JOURNAL

Genome-wide profiling of histone H3K4-tri-methylation and gene expression in rice under drought stress

(2012) Wei Zong et al.   PLANT MOLECULAR BIOLOGY

The CHD3 Remodeler PICKLE Associates with Genes Enriched for Trimethylation of Histone H3 Lysine 27

(2012) H. Zhang et al.   PLANT PHYSIOLOGY

Non-coding RNAs in the plant response to abiotic stress

(2012) Cecilia Contreras-Cubas et al.   PLANTA

The Progeny of Arabidopsis thaliana Plants Exposed to Salt Exhibit Changes in DNA Methylation, Histone Modifications and Gene Expression

(2012) Andriy Bilichak et al.   PLoS One

A core subunit of Polycomb repressive complex 1 is broadly conserved in function but not primary sequence

(2012) L. Y. Beh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Histone H1 Variant Accumulates in Response to Water Stress in the Drought Tolerant Genotype of Gossypium herbaceum L.

(2012) Ila Trivedi et al.   PROTEIN JOURNAL

Overcoming the nucleosome barrier during transcript elongation

(2012) Steven J. Petesch et al.   TRENDS IN GENETICS

A Polycomb complex remains bound through DNA replication in the absence of other eukaryotic proteins

(2012) Bettina M. Lengsfeld et al.   Scientific Reports

Dynamic Deposition of Histone Variant H3.3 Accompanies Developmental Remodeling of the Arabidopsis Transcriptome

(2012) Heike Wollmann et al.   PLoS Genetics

EMF1 and PRC2 Cooperate to Repress Key Regulators of Arabidopsis Development

(2012) Sang Yeol Kim et al.   PLoS Genetics

Deposition of Histone Variant H2A.Z within Gene Bodies Regulates Responsive Genes

(2012) Devin Coleman-Derr et al.   PLoS Genetics

A Polycomb Group Protein Is Retained at Specific Sites on Chromatin in Mitosis

(2012) Nicole E. Follmer et al.   PLoS Genetics

Transgenerational epigenetic inheritance in plants

(2011) Marie-Theres Hauser et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Role of miRNAs and siRNAs in biotic and abiotic stress responses of plants

(2011) Basel Khraiwesh et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Histone variants and chromatin assembly in plant abiotic stress responses

(2011) Yan Zhu et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Regulation of chromatin by histone modifications

(2011) Andrew J Bannister et al.   CELL RESEARCH

ATP-dependent chromatin remodeling: genetics, genomics and mechanisms

(2011) Diana C Hargreaves et al.   CELL RESEARCH

Dynamics of histone H3 lysine 27 trimethylation in plant development

(2011) Binglian Zheng et al.   CURRENT OPINION IN PLANT BIOLOGY

Epigenetic contribution to stress adaptation in plants

(2011) Marie Mirouze et al.   CURRENT OPINION IN PLANT BIOLOGY

Genome instability and epigenetic modification—heritable responses to environmental stress?

(2011) Alex Boyko et al.   CURRENT OPINION IN PLANT BIOLOGY

Selected aspects of transgenerational epigenetic inheritance and resetting in plants

(2011) Jerzy Paszkowski et al.   CURRENT OPINION IN PLANT BIOLOGY

Genome-Wide Epigenetic Perturbation Jump-Starts Patterns of Heritable Variation Found in Nature

(2011) Fabrice Roux et al.   GENETICS

Molecular Mechanisms of Long Noncoding RNAs

(2011) Kevin C. Wang et al.   MOLECULAR CELL

Determinants and dynamics of genome accessibility

(2011) Oliver Bell et al.   NATURE REVIEWS GENETICS

Genome-wide mapping of Arabidopsis thaliana origins of DNA replication and their associated epigenetic marks

(2011) Celina Costas et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

ArabidopsisFloral Initiator SKB1 Confers High Salt Tolerance by Regulating Transcription and Pre-mRNA Splicing through Altering Histone H4R3 and Small Nuclear Ribonucleoprotein LSM4 Methylation

(2011) Zhaoliang Zhang et al.   PLANT CELL

Coordinated Gene Networks RegulatingArabidopsisPlant Metabolism in Response to Various Stresses and Nutritional Cues

(2011) Hadar Less et al.   PLANT CELL

The Arabidopsis trithorax-like factor ATX1 functions in dehydration stress responses via ABA-dependent and ABA-independent pathways

(2011) Yong Ding et al.   PLANT JOURNAL

Polycomb Group Complexes Mediate Developmental Transitions in Plants

(2011) S. Holec et al.   PLANT PHYSIOLOGY

Molecular aspects of defence priming

(2011) Uwe Conrath   TRENDS IN PLANT SCIENCE

PcG Complexes Set the Stage for Epigenetic Inheritance of Gene Silencing in Early S Phase before Replication

(2011) Chiara Lanzuolo et al.   PLoS Genetics

Polycomb Repressive Complex 2 Controls the Embryo-to-Seedling Phase Transition

(2011) Daniel Bouyer et al.   PLoS Genetics

Pleiotropy, plasticity, and the evolution of plant abiotic stress tolerance

(2010) David L. Des Marais et al.   Annals of the New York Academy of Sciences

Genetic Engineering for Modern Agriculture: Challenges and Perspectives

(2010) Ron Mittler et al.   Annual Review of Plant Biology

Epigenetic chromatin modifiers in barley: IV. The study of barley Polycomb group (PcG) genes during seed development and in response to external ABA

(2010) Aliki Kapazoglou et al.   BMC PLANT BIOLOGY

Dynamic Changes in Genome-Wide Histone H3 Lysine 4 Methylation Patterns in Response to Dehydration Stress in Arabidopsis thaliana

(2010) Karin van Dijk et al.   BMC PLANT BIOLOGY

More from less: plant growth under limited water

(2010) Aleksandra Skirycz et al.   CURRENT OPINION IN BIOTECHNOLOGY

Drought-induced site-specific DNA methylation and its association with drought tolerance in rice (Oryza sativa L.)

(2010) Wen-Sheng Wang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Involvement of Arabidopsis histone deacetylase HDA6 in ABA and salt stress response

(2010) Li-Ting Chen et al.   JOURNAL OF EXPERIMENTAL BOTANY

A Novel Proteomics Approach to Identify SUMOylated Proteins and Their Modification Sites in Human Cells

(2010) Frederic Galisson et al.   MOLECULAR & CELLULAR PROTEOMICS

The Chromodomains of the Chd1 Chromatin Remodeler Regulate DNA Access to the ATPase Motor

(2010) Glenn Hauk et al.   MOLECULAR CELL

Narrowing Down the Targets: Towards Successful Genetic Engineering of Drought-Tolerant Crops

(2010) Shujun Yang et al.   Molecular Plant

A methyl transferase links the circadian clock to the regulation of alternative splicing

(2010) Sabrina E. Sanchez et al.   NATURE

Global threats to human water security and river biodiversity

(2010) C. J. Vörösmarty et al.   NATURE

Establishing, maintaining and modifying DNA methylation patterns in plants and animals

(2010) Julie A. Law et al.   NATURE REVIEWS GENETICS

Histone variants — ancient wrap artists of the epigenome

(2010) Paul B. Talbert et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

A methylation and phosphorylation switch between an adjacent lysine and serine determines human DNMT1 stability

(2010) Pierre-Olivier Estève et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Regulated AtHKT1 Gene Expression by a Distal Enhancer Element and DNA Methylation in the Promoter Plays an Important Role in Salt Tolerance

(2010) Dongwon Baek et al.   PLANT AND CELL PHYSIOLOGY

Epigenetic Variation in Mangrove Plants Occurring in Contrasting Natural Environment

(2010) Catarina Fonseca Lira-Medeiros et al.   PLoS One

Phosphatidylinositol 5-Phosphate Links Dehydration Stress to the Activity of ARABIDOPSIS TRITHORAX-LIKE Factor ATX1

(2010) Ivan Ndamukong et al.   PLoS One

Type II protein arginine methyltransferase 5 (PRMT5) is required for circadian period determination in Arabidopsis thaliana

(2010) S. Hong et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Arginine methylation mediated by the Arabidopsis homolog of PRMT5 is essential for proper pre-mRNA splicing

(2010) X. Deng et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Plant molecular stress responses face climate change

(2010) Ishita Ahuja et al.   TRENDS IN PLANT SCIENCE

The Biology of Chromatin Remodeling Complexes

(2009) Cedric R. Clapier et al.   Annual Review of Biochemistry

Epigenetic regulation of stress responses in plants

(2009) Viswanathan Chinnusamy et al.   CURRENT OPINION IN PLANT BIOLOGY

The SAND domain protein ULTRAPETALA1 acts as a trithorax group factor to regulate cell fate in plants

(2009) C. C. Carles et al.   GENES & DEVELOPMENT

Compromised stability of DNA methylation and transposon immobilization in mosaic Arabidopsis epigenomes

(2009) J. Reinders et al.   GENES & DEVELOPMENT

In vitro reconstitution of an abscisic acid signalling pathway

(2009) Hiroaki Fujii et al.   NATURE

Chromatin regulation functions in plant abiotic stress responses

(2009) JONG-MYONG KIM et al.   PLANT CELL AND ENVIRONMENT

AREB1, AREB2, and ABF3 are master transcription factors that cooperatively regulate ABRE-dependent ABA signaling involved in drought stress tolerance and require ABA for full activation

(2009) Takuya Yoshida et al.   PLANT JOURNAL

Epigenetic Regulation of Gene Programs by EMF1 and EMF2 in Arabidopsis

(2009) S. Y. Kim et al.   PLANT PHYSIOLOGY

Triple Loss of Function of Protein Phosphatases Type 2C Leads to Partial Constitutive Response to Endogenous Abscisic Acid

(2009) S. Rubio et al.   PLANT PHYSIOLOGY

Type 2C protein phosphatases directly regulate abscisic acid-activated protein kinases in Arabidopsis

(2009) T. Umezawa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A protein kinase-phosphatase pair interacts with an ion channel to regulate ABA signaling in plant guard cells

(2009) Sung Chul Lee et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

CHD3 Proteins and Polycomb Group Proteins Antagonistically Determine Cell Identity in Arabidopsis

(2009) Ernst Aichinger et al.   PLoS Genetics

Photosynthesis under drought and salt stress: regulation mechanisms from whole plant to cell

(2008) M. M. Chaves et al.   ANNALS OF BOTANY

Characterization of a phosphatase 2C protein as an interacting partner of the histone acetyltransferase GCN5 in Arabidopsis

(2008) Caroline Servet et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks

(2008) Daniel Zilberman et al.   NATURE

Alterations of Lysine Modifications on the Histone H3 N-Tail under Drought Stress Conditions in Arabidopsis thaliana

(2008) Jong-Myong Kim et al.   PLANT AND CELL PHYSIOLOGY

EMBRYONIC FLOWER1 Participates in Polycomb Group-Mediated AG Gene Silencing in Arabidopsis

(2008) M. Calonje et al.   PLANT CELL

HAB1-SWI3B Interaction Reveals a Link between Abscisic Acid Signaling and Putative SWI/SNF Chromatin-Remodeling Complexes in Arabidopsis

(2008) A. Saez et al.   PLANT CELL

Gene trap lines identify Arabidopsis genes expressed in stomatal guard cells

(2008) Massimo Galbiati et al.   PLANT JOURNAL

The Arabidopsis BRAHMA Chromatin-Remodeling ATPase Is Involved in Repression of Seed Maturation Genes in Leaves

(2008) X. Tang et al.   PLANT PHYSIOLOGY

Histone arginine methylation is required for vernalization-induced epigenetic silencing of FLC in winter-annual Arabidopsis thaliana

(2008) R. J. Schmitz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA