Chromatin changes in response to drought, salinity, heat, and cold stresses in plants

Histone acetylation associated up-regulation of the cell wall related genes is involved in salt stress induced maize root swelling

(2014) Hui Li et al.   BMC PLANT BIOLOGY

RNA-directed DNA methylation: an epigenetic pathway of increasing complexity

(2014) Marjori A. Matzke et al.   NATURE REVIEWS GENETICS

Induced and Constitutive DNA Methylation in a Salinity-Tolerant Wheat Introgression Line

(2014) Meng Wang et al.   PLANT AND CELL PHYSIOLOGY

Arabidopsis miR156 Regulates Tolerance to Recurring Environmental Stress through SPL Transcription Factors

(2014) A. Stief et al.   PLANT CELL

Histone chaperone ASF1 is involved in gene transcription activation in response to heat stress inArabidopsis thaliana

(2014) MINJIE WENG et al.   PLANT CELL AND ENVIRONMENT

Differential Acetylation of Histone H3 at the Regulatory Region of OsDREB1b Promoter Facilitates Chromatin Remodelling and Transcription Activation during Cold Stress

(2014) Dipan Roy et al.   PLoS One

Plant salt-tolerance mechanisms

(2014) Ulrich Deinlein et al.   TRENDS IN PLANT SCIENCE

Epigenetic regulation of gene responsiveness in Arabidopsis

(2014) Taiko K. To et al.   Frontiers in Plant Science

Direct measurement of transcription rates reveals multiple mechanisms for configuration of the Arabidopsis ambient temperature response

(2014) Kate Sidaway-Lee et al.   GENOME BIOLOGY

Expression analysis of histone acetyltransferases in rice under drought stress

(2013) Hui Fang et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Genome-wide analysis of histone modifiers in tomato: gaining an insight into their developmental roles

(2013) Riccardo Aiese Cigliano et al.   BMC GENOMICS

The Arabidopsis Nucleosome Remodeler DDM1 Allows DNA Methyltransferases to Access H1-Containing Heterochromatin

(2013) Assaf Zemach et al.   CELL

Stress-Free with Rpd3: a Unique Chromatin Complex Mediates the Response to Oxidative Stress

(2013) S. L. McDaniel et al.   MOLECULAR AND CELLULAR BIOLOGY

The RdDM Pathway Is Required for Basal Heat Tolerance in Arabidopsis

(2013) Olga V. Popova et al.   Molecular Plant

Polymerase IV occupancy at RNA-directed DNA methylation sites requires SHH1

(2013) Julie A. Law et al.   NATURE

Arabidopsis meiotic crossover hot spots overlap with H2A.Z nucleosomes at gene promoters

(2013) Kyuha Choi et al.   NATURE GENETICS

ABA control of plant macroelement membrane transport systems in response to water deficit and high salinity

(2013) Yuriko Osakabe et al.   NEW PHYTOLOGIST

The Cold Signaling Attenuator HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE1 Activates FLOWERING LOCUS C Transcription via Chromatin Remodeling under Short-Term Cold Stress in Arabidopsis

(2013) J.-H. Jung et al.   PLANT CELL

Histone Deacetylase Complex1 Expression Level Titrates Plant Growth and Abscisic Acid Sensitivity in Arabidopsis

(2013) G. Perrella et al.   PLANT CELL

Structural insights into the histone H1-nucleosome complex

(2013) B.-R. Zhou et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Histone Acetylation Switch Regulates H2A.Z Deposition by the SWR-C Remodeling Enzyme

(2013) S. Watanabe et al.   SCIENCE

Multiplex Genome Engineering Using CRISPR/Cas Systems

(2013) L. Cong et al.   SCIENCE

Vernalization - a cold-induced epigenetic switch

(2012) J. Song et al.   JOURNAL OF CELL SCIENCE

Low relative humidity triggers RNA-directed de novo DNA methylation and suppression of genes controlling stomatal development

(2012) Penny J. Tricker et al.   JOURNAL OF EXPERIMENTAL BOTANY

HD2C interacts with HDA6 and is involved in ABA and salt stress response in Arabidopsis

(2012) Ming Luo et al.   JOURNAL OF EXPERIMENTAL BOTANY

Quantitative Proteomics Reveals Factors Regulating RNA Biology as Dynamic Targets of Stress-induced SUMOylation inArabidopsis

(2012) Marcus J. Miller et al.   MOLECULAR & CELLULAR PROTEOMICS

A DNA 3′ Phosphatase Functions in Active DNA Demethylation in Arabidopsis

(2012) María Isabel Martínez-Macías et al.   MOLECULAR CELL

Transition of Chromatin Status During the Process of Recovery from Drought Stress in Arabidopsis thaliana

(2012) Jong-Myong Kim et al.   PLANT AND CELL PHYSIOLOGY

Cold stress selectively unsilences tandem repeats in heterochromatin associated with accumulation of H3K9ac

(2012) YONG HU et al.   PLANT CELL AND ENVIRONMENT

The Progeny of Arabidopsis thaliana Plants Exposed to Salt Exhibit Changes in DNA Methylation, Histone Modifications and Gene Expression

(2012) Andriy Bilichak et al.   PLoS One

Salt Stress Induced Variation in DNA Methylation Pattern and Its Influence on Gene Expression in Contrasting Rice Genotypes

(2012) Ratna Karan et al.   PLoS One

The Dynamic Changes of DNA Methylation and Histone Modifications of Salt Responsive Transcription Factor Genes in Soybean

(2012) Yuguang Song et al.   PLoS One

A Histone Acetyltransferase Regulates Active DNA Demethylation in Arabidopsis

(2012) W. Qian et al.   SCIENCE

Active DNA Demethylation in Plant Companion Cells Reinforces Transposon Methylation in Gametes

(2012) C. A. Ibarra et al.   SCIENCE

Multiple exposures to drought 'train' transcriptional responses in Arabidopsis

(2012) Yong Ding et al.   Nature Communications

Deposition of Histone Variant H2A.Z within Gene Bodies Regulates Responsive Genes

(2012) Devin Coleman-Derr et al.   PLoS Genetics

Arabidopsis HDA6 is required for freezing tolerance

(2011) Taiko Kim To et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Chromatin modifications and remodeling in plant abiotic stress responses

(2011) Ming Luo et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Phylogenetic analysis and classification of the Brassica rapa SET-domain protein family

(2011) Yong Huang et al.   BMC PLANT BIOLOGY

The Rpd3 Core Complex Is a Chromatin Stabilization Module

(2011) Xiao-Fen Chen et al.   CURRENT BIOLOGY

Epigenetic contribution to stress adaptation in plants

(2011) Marie Mirouze et al.   CURRENT OPINION IN PLANT BIOLOGY

ABA-mediated transcriptional regulation in response to osmotic stress in plants

(2011) Yasunari Fujita et al.   JOURNAL OF PLANT RESEARCH

An siRNA pathway prevents transgenerational retrotransposition in plants subjected to stress

(2011) Hidetaka Ito et al.   NATURE

The low temperature response pathways for cold acclimation and vernalization are independent

(2011) DONNA M. BOND et al.   PLANT CELL AND ENVIRONMENT

Genome-wide analysis of the SET DOMAIN GROUP family in Grapevine

(2011) Felipe Aquea et al.   PLANT CELL REPORTS

The Arabidopsis trithorax-like factor ATX1 functions in dehydration stress responses via ABA-dependent and ABA-independent pathways

(2011) Yong Ding et al.   PLANT JOURNAL

Trichostatin A Selectively Suppresses the Cold-Induced Transcription of the ZmDREB1 Gene in Maize

(2011) Yong Hu et al.   PLoS One

Function of the DEMETER DNA glycosylase in the Arabidopsis thaliana male gametophyte

(2011) V. K. Schoft et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Arabidopsis HDA6 Regulates Locus-Directed Heterochromatin Silencing in Cooperation with MET1

(2011) Taiko Kim To et al.   PLoS Genetics

Dynamic Changes in Genome-Wide Histone H3 Lysine 4 Methylation Patterns in Response to Dehydration Stress in Arabidopsis thaliana

(2010) Karin van Dijk et al.   BMC PLANT BIOLOGY

A Protein Complex Required for Polymerase V Transcripts and RNA- Directed DNA Methylation in Arabidopsis

(2010) Julie A. Law et al.   CURRENT BIOLOGY

‘Omics’ analyses of regulatory networks in plant abiotic stress responses

(2010) Kaoru Urano et al.   CURRENT OPINION IN PLANT BIOLOGY

Epigenetic performers in plants‡

(2010) Ming Chen et al.   DEVELOPMENT GROWTH & DIFFERENTIATION

Involvement of Arabidopsis histone deacetylase HDA6 in ABA and salt stress response

(2010) Li-Ting Chen et al.   JOURNAL OF EXPERIMENTAL BOTANY

The Rpd3L HDAC complex is essential for the heat stress response in yeast

(2010) Clàudia Ruiz-Roig et al.   MOLECULAR MICROBIOLOGY

Gene regulation: A chromatin thermostat

(2010) Roger B. Deal et al.   NATURE

An RNA polymerase II- and AGO4-associated protein acts in RNA-directed DNA methylation

(2010) Zhihuan Gao et al.   NATURE

Genome-wide mapping of cytosine methylation revealed dynamic DNA methylation patterns associated with genes and centromeres in rice

(2010) Huihuang Yan et al.   PLANT JOURNAL

Epigenetic chromatin modifiers in barley: III. Isolation and characterization of the barley GNAT-MYST family of histone acetyltransferases and responses to exogenous ABA

(2010) Dimitra Papaefthimiou et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Arabidopsis thaliana transcriptional co-activators ADA2b and SGF29a are implicated in salt stress responses

(2010) Athanasios Kaldis et al.   PLANTA

Transgenerational Adaptation of Arabidopsis to Stress Requires DNA Methylation and the Function of Dicer-Like Proteins

(2010) Alex Boyko et al.   PLoS One

Proteomic analyses identify a diverse array of nuclear processes affected by small ubiquitin-like modifier conjugation in Arabidopsis

(2010) M. J. Miller et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Epigenetic Reprogramming in Plant and Animal Development

(2010) Suhua Feng et al.   SCIENCE

A Coastal Cline in Sodium Accumulation in Arabidopsis thaliana Is Driven by Natural Variation of the Sodium Transporter AtHKT1;1

(2010) Ivan Baxter et al.   PLoS Genetics

Active DNA Demethylation Mediated by DNA Glycosylases

(2009) Jian-Kang Zhu   Annual Review of Genetics

NuA4 and SWR1-C: two chromatin-modifying complexes with overlapping functions and componentsThis paper is one of a selection of papers published in this Special Issue, entitled 30th Annual International Asilomar Chromatin and Chromosomes Conference, and has undergone the Journal's usual peer review process.

(2009) Phoebe Y.T. Lu et al.   Biochemistry and Cell Biology

H2A.Z-Containing Nucleosomes Mediate the Thermosensory Response in Arabidopsis

(2009) S. Vinod Kumar et al.   CELL

Epigenetic regulation of stress responses in plants

(2009) Viswanathan Chinnusamy et al.   CURRENT OPINION IN PLANT BIOLOGY

A Tale of Tails: How Histone Tails Mediate Chromatin Compaction in Different Salt and Linker Histone Environments†

(2009) Gaurav Arya et al.   JOURNAL OF PHYSICAL CHEMISTRY A

The Beauty of Being a Variant: H2A.Z and the SWR1 Complex in Plants

(2009) Rosana March-Díaz et al.   Molecular Plant

Epigenetic chromatin modifiers in barley: I. Cloning, mapping and expression analysis of the plant specificHD2family of histone deacetylases from barley, during seed development and after hormonal treatment

(2009) Kyproula Demetriou et al.   PHYSIOLOGIA PLANTARUM

Histone occupancy-dependent and -independent removal of H3K27 trimethylation at cold-responsive genes in Arabidopsis

(2009) Chang Seob Kwon et al.   PLANT JOURNAL

A Single Amino Acid Change in the Enhancer of Zeste Ortholog CURLY LEAF Results in Vernalization-Independent, Rapid Flowering in Arabidopsis

(2009) M. R. Doyle et al.   PLANT PHYSIOLOGY

HKT transporter-mediated salinity resistance mechanisms in Arabidopsis and monocot crop plants

(2009) Tomoaki Horie et al.   TRENDS IN PLANT SCIENCE

Genome-wide analysis of mono-, di- and trimethylation of histone H3 lysine 4 in Arabidopsis thaliana

(2009) Xiaoyu Zhang et al.   GENOME BIOLOGY

ROS3 is an RNA-binding protein required for DNA demethylation in Arabidopsis

(2008) Xianwu Zheng et al.   NATURE

Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks

(2008) Daniel Zilberman et al.   NATURE

A structural-maintenance-of-chromosomes hinge domain–containing protein is required for RNA-directed DNA methylation

(2008) Tatsuo Kanno et al.   NATURE GENETICS

The Rpd3/Hda1 family of lysine deacetylases: from bacteria and yeast to mice and men

(2008) Xiang-Jiao Yang et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Arabidopsis Transcriptome Analysis under Drought, Cold, High-Salinity and ABA Treatment Conditions using a Tiling Array

(2008) A. Matsui et al.   PLANT AND CELL PHYSIOLOGY

Alterations of Lysine Modifications on the Histone H3 N-Tail under Drought Stress Conditions in Arabidopsis thaliana

(2008) Jong-Myong Kim et al.   PLANT AND CELL PHYSIOLOGY

Epigenetic Modification of Centromeric Chromatin: Hypomethylation of DNA Sequences in the CENH3-Associated Chromatin in Arabidopsis thaliana and Maize

(2008) W. Zhang et al.   PLANT CELL

Involvement of Arabidopsis HOS15 in histone deacetylation and cold tolerance

(2008) J. Zhu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genic and Global Functions for Paf1C in Chromatin Modification and Gene Expression in Arabidopsis

(2008) Sookyung Oh et al.   PLoS Genetics