Histone acetyltransferase GCN5 is essential for heat stress-responsive gene activation and thermotolerance in Arabidopsis

Histone chaperone ASF1 is involved in gene transcription activation in response to heat stress inArabidopsis thaliana

(2014) MINJIE WENG et al.   PLANT CELL AND ENVIRONMENT

Molecular mechanisms of the plant heat stress response

(2013) Ai-Li Qu et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

The RdDM Pathway Is Required for Basal Heat Tolerance in Arabidopsis

(2013) Olga V. Popova et al.   Molecular Plant

ANTI-SILENCING FUNCTION1 Proteins Are Involved in Ultraviolet-Induced DNA Damage Repair and Are Cell Cycle Regulated by E2F Transcription Factors in Arabidopsis

(2013) L. D. Lario et al.   PLANT PHYSIOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

The Rice R2R3-MYB Transcription Factor OsMYB55 Is Involved in the Tolerance to High Temperature and Modulates Amino Acid Metabolism

(2012) Ashraf El-kereamy et al.   PLoS One

How do plants feel the heat?

(2012) Ron Mittler et al.   TRENDS IN BIOCHEMICAL SCIENCES

Genetic Interactions Between Arabidopsis DET1 and UVH6 During Development and Abiotic Stress Response

(2012) Esther Kim et al.   G3-Genes Genomes Genetics

Arabidopsis HsfA1 transcription factors function as the main positive regulators in heat shock-responsive gene expression

(2011) Takumi Yoshida et al.   MOLECULAR GENETICS AND GENOMICS

HsfA1d and HsfA1e Involved in the Transcriptional Regulation of HsfA2 Function as Key Regulators for the Hsf Signaling Network in Response to Environmental Stress

(2011) Ayako Nishizawa-Yokoi et al.   PLANT AND CELL PHYSIOLOGY

The role of class A1 heat shock factors (HSFA1s) in response to heat and other stresses in Arabidopsis

(2011) HSIANG-CHIN LIU et al.   PLANT CELL AND ENVIRONMENT

Identification of the MBF1 heat-response regulon of Arabidopsis thaliana

(2011) Nobuhiro Suzuki et al.   PLANT JOURNAL

Climate Trends and Global Crop Production Since 1980

(2011) D. B. Lobell et al.   SCIENCE

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Distinct roles of GCN5/PCAF-mediated H3K9ac and CBP/p300-mediated H3K18/27ac in nuclear receptor transactivation

(2010) Qihuang Jin et al.   EMBO JOURNAL

Involvement of Arabidopsis histone deacetylase HDA6 in ABA and salt stress response

(2010) Li-Ting Chen et al.   JOURNAL OF EXPERIMENTAL BOTANY

Transgenerational Inheritance and Resetting of Stress-Induced Loss of Epigenetic Gene Silencing in Arabidopsis

(2010) Christina Lang-Mladek et al.   Molecular Plant

agriGO: a GO analysis toolkit for the agricultural community

(2010) Zhou Du et al.   NUCLEIC ACIDS RESEARCH

Molecular Signals of Epigenetic States

(2010) Roberto Bonasio et al.   SCIENCE

Chromatin Landscape Dictates HSF Binding to Target DNA Elements

(2010) Michael J. Guertin et al.   PLoS Genetics

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

H2A.Z-Containing Nucleosomes Mediate the Thermosensory Response in Arabidopsis

(2009) S. Vinod Kumar et al.   CELL

Histone acetyltransferase GCN5 interferes with the miRNA pathway in Arabidopsis

(2009) Wanhui Kim et al.   CELL RESEARCH

Epigenetic regulation of stress responses in plants

(2009) Viswanathan Chinnusamy et al.   CURRENT OPINION IN PLANT BIOLOGY

Members of the GCN5 Histone Acetyltransferase Complex Regulate PLETHORA-Mediated Root Stem Cell Niche Maintenance and Transit Amplifying Cell Proliferation in Arabidopsis

(2009) N. Kornet et al.   PLANT CELL

Chromatin regulation functions in plant abiotic stress responses

(2009) JONG-MYONG KIM et al.   PLANT CELL AND ENVIRONMENT

Hormonal regulation of temperature-induced growth in Arabidopsis

(2009) Jon A. Stavang et al.   PLANT JOURNAL

Gcn5- and Elp3-induced histone H3 acetylation regulateshsp70gene transcription in yeast

(2008) Qiuju Han et al.   BIOCHEMICAL JOURNAL

Heat stress-responsive transcriptome analysis in heat susceptible and tolerant wheat (Triticum aestivum L.) by using Wheat Genome Array

(2008) Dandan Qin et al.   BMC GENOMICS

Non-redundant functions of sHSP-CIs in acquired thermotolerance and their role in early seed development in Arabidopsis

(2008) Mery Dafny-Yelin et al.   PLANT MOLECULAR BIOLOGY

UVH6, a Plant Homolog of the Human/Yeast TFIIH Transcription Factor Subunit XPD/RAD3, Regulates Cold-stress Genes in Arabidopsis thaliana

(2008) Jennifer D. Hall et al.   PLANT MOLECULAR BIOLOGY REPORTER

Arabidopsis Stromal 70-kD Heat Shock Proteins Are Essential for Plant Development and Important for Thermotolerance of Germinating Seeds

(2008) P.-H. Su et al.   PLANT PHYSIOLOGY

Involvement of Arabidopsis HOS15 in histone deacetylation and cold tolerance

(2008) J. Zhu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA