Plant and animal chromatin three-dimensional organization: similar structures but different functions
Published 2020 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Plant and animal chromatin three-dimensional organization: similar structures but different functions
Authors
Keywords
-
Journal
JOURNAL OF EXPERIMENTAL BOTANY
Volume -, Issue -, Pages -
Publisher
Oxford University Press (OUP)
Online
2020-04-30
DOI
10.1093/jxb/eraa220
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Tissue‐specific Hi‐C analyses of rice, foxtail millet and maize suggest non‐canonical function of plant chromatin domains
- (2019) Pengfei Dong et al. Journal of Integrative Plant Biology
- Considerations and Challenges in Studying Liquid-Liquid Phase Separation and Biomolecular Condensates
- (2019) Simon Alberti et al. CELL
- The cis-Regulatory Atlas of the Mouse Immune System
- (2019) Hideyuki Yoshida et al. CELL
- Implications of liquid–liquid phase separation in plant chromatin organization and transcriptional control
- (2019) Nan Wang et al. CURRENT OPINION IN GENETICS & DEVELOPMENT
- Heterochromatin drives compartmentalization of inverted and conventional nuclei
- (2019) Martin Falk et al. NATURE
- Highly rearranged chromosomes reveal uncoupling between genome topology and gene expression
- (2019) Yad Ghavi-Helm et al. NATURE GENETICS
- Chromatin interaction maps reveal genetic regulation for quantitative traits in maize
- (2019) Yong Peng et al. Nature Communications
- Long-range interactions between proximal and distal regulatory regions in maize
- (2019) En Li et al. Nature Communications
- DNA loop extrusion by human cohesin
- (2019) Iain F. Davidson et al. SCIENCE
- Human cohesin compacts DNA by loop extrusion
- (2019) Yoori Kim et al. SCIENCE
- Establishment of DNA-DNA Interactions by the Cohesin Ring
- (2018) Yasuto Murayama et al. CELL
- Genetic determinants of co-accessible chromatin regions in activated T cells across humans
- (2018) Rachel E. Gate et al. NATURE GENETICS
- Genome-wide Hi-C analysis reveals extensive hierarchical chromatin interactions in rice
- (2018) Qianli Dong et al. PLANT JOURNAL
- Three-dimensional genome structures of single diploid human cells
- (2018) Longzhi Tan et al. SCIENCE
- The chromatin accessibility landscape of primary human cancers
- (2018) M. Ryan Corces et al. SCIENCE
- Reciprocal insulation analysis of Hi-C data shows that TADs represent a functionally but not structurally privileged scale in the hierarchical folding of chromosomes
- (2017) Yinxiu Zhan et al. GENOME RESEARCH
- Nonrandom domain organization of the Arabidopsis genome at the nuclear periphery
- (2017) Xiuli Bi et al. GENOME RESEARCH
- Evolutionarily Conserved Principles Predict 3D Chromatin Organization
- (2017) M. Jordan Rowley et al. MOLECULAR CELL
- 3D Chromatin Architecture of Large Plant Genomes Determined by Local A/B Compartments
- (2017) Pengfei Dong et al. Molecular Plant
- 3D structures of individual mammalian genomes studied by single-cell Hi-C
- (2017) Tim J. Stevens et al. NATURE
- A chromosome conformation capture ordered sequence of the barley genome
- (2017) Martin Mascher et al. NATURE
- Asymmetric subgenome selection and cis-regulatory divergence during cotton domestication
- (2017) Maojun Wang et al. NATURE GENETICS
- Mapping of long-range chromatin interactions by proximity ligation-assisted ChIP-seq
- (2016) Rongxin Fang et al. CELL RESEARCH
- 3D Chromosome Regulatory Landscape of Human Pluripotent Cells
- (2016) Xiong Ji et al. Cell Stem Cell
- The second decade of 3C technologies: detailed insights into nuclear organization
- (2016) Annette Denker et al. GENES & DEVELOPMENT
- Genome-wide analysis of chromatin packing inArabidopsis thalianaat single-gene resolution
- (2016) Chang Liu et al. GENOME RESEARCH
- HiChIP: efficient and sensitive analysis of protein-directed genome architecture
- (2016) Maxwell R Mumbach et al. NATURE METHODS
- Organization and function of the 3D genome
- (2016) Boyan Bonev et al. NATURE REVIEWS GENETICS
- Regulation of Genome Architecture and Function by Polycomb Proteins
- (2016) Marianne Entrevan et al. TRENDS IN CELL BIOLOGY
- Dynamic and flexible H3K9me3 bridging via HP1β dimerization establishes a plastic state of condensed chromatin
- (2016) Kyoko Hiragami-Hamada et al. Nature Communications
- Formation of Chromosomal Domains by Loop Extrusion
- (2016) Geoffrey Fudenberg et al. Cell Reports
- CTCF-Mediated Human 3D Genome Architecture Reveals Chromatin Topology for Transcription
- (2015) Zhonghui Tang et al. CELL
- CRISPR Inversion of CTCF Sites Alters Genome Topology and Enhancer/Promoter Function
- (2015) Ya Guo et al. CELL
- Comprehensive single cell-resolution analysis of the role of chromatin regulators in early C. elegans embryogenesis
- (2015) Angela V. Krüger et al. DEVELOPMENTAL BIOLOGY
- Chromatin architecture reorganization during stem cell differentiation
- (2015) Jesse R. Dixon et al. NATURE
- A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
- (2014) Suhas S.P. Rao et al. CELL
- Control of Cell Identity Genes Occurs in Insulated Neighborhoods in Mammalian Chromosomes
- (2014) Jill M. Dowen et al. CELL
- Distinct structural transitions of chromatin topological domains correlate with coordinated hormone-induced gene regulation
- (2014) François Le Dily et al. GENES & DEVELOPMENT
- Genome-wide analysis of local chromatin packing inArabidopsis thaliana
- (2014) Congmao Wang et al. GENOME RESEARCH
- Functional and topological characteristics of mammalian regulatory domains
- (2014) O. Symmons et al. GENOME RESEARCH
- Hi-C Analysis in Arabidopsis Identifies the KNOT, a Structure with Similarities to the flamenco Locus of Drosophila
- (2014) Stefan Grob et al. MOLECULAR CELL
- Noncoding Transcription by Alternative RNA Polymerases Dynamically Regulates an Auxin-Driven Chromatin Loop
- (2014) Federico Ariel et al. MOLECULAR CELL
- Genome-wide Hi-C Analyses in Wild-Type and Mutants Reveal High-Resolution Chromatin Interactions in Arabidopsis
- (2014) Suhua Feng et al. MOLECULAR CELL
- Topologically associating domains are stable units of replication-timing regulation
- (2014) Benjamin D. Pope et al. NATURE
- A DistalCCAAT/NUCLEAR FACTOR Y Complex Promotes Chromatin Looping at theFLOWERING LOCUS TPromoter and Regulates the Timing of Flowering inArabidopsis
- (2014) Shuanghe Cao et al. PLANT CELL
- New tools in the box: An evolutionary synopsis of chromatin insulators
- (2014) Peter Heger et al. TRENDS IN GENETICS
- Induced and natural variation of promoter length modulates the photoperiodic response of FLOWERING LOCUS T
- (2014) Liangyu Liu et al. Nature Communications
- Genome Architecture: Domain Organization of Interphase Chromosomes
- (2013) Wendy A. Bickmore et al. CELL
- Architectural Protein Subclasses Shape 3D Organization of Genomes during Lineage Commitment
- (2013) Jennifer E. Phillips-Cremins et al. CELL
- Genome organization and long-range regulation of gene expression by enhancers
- (2013) Andrea Smallwood et al. CURRENT OPINION IN CELL BIOLOGY
- Dual regulation of ETTIN (ARF3) gene expression by AS1-AS2, which maintains the DNA methylation level, is involved in stabilization of leaf adaxial-abaxial partitioning in Arabidopsis
- (2013) M. Iwasaki et al. DEVELOPMENT
- Extensive Promoter-Centered Chromatin Interactions Provide a Topological Basis for Transcription Regulation
- (2012) Guoliang Li et al. CELL
- A gene loop containing the floral repressor FLC is disrupted in the early phase of vernalization
- (2012) Pedro Crevillén et al. EMBO JOURNAL
- Topological domains in mammalian genomes identified by analysis of chromatin interactions
- (2012) Jesse R. Dixon et al. NATURE
- Spatial partitioning of the regulatory landscape of the X-inactivation centre
- (2012) Elphège P. Nora et al. NATURE
- The chromatin insulator CTCF and the emergence of metazoan diversity
- (2012) P. Heger et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- From nucleosome to chromosome: a dynamic organization of genetic information
- (2011) Paul Fransz et al. PLANT JOURNAL
- Chromosome Organization and Dynamics during Interphase, Mitosis, and Meiosis in Plants
- (2011) C.-L. Tiang et al. PLANT PHYSIOLOGY
- Evolutionarily conserved replication timing profiles predict long-range chromatin interactions and distinguish closely related cell types
- (2010) T. Ryba et al. GENOME RESEARCH
- Condensin and cohesin complexity: the expanding repertoire of functions
- (2010) Andrew J. Wood et al. NATURE REVIEWS GENETICS
- An oestrogen-receptor-α-bound human chromatin interactome
- (2009) Melissa J. Fullwood et al. NATURE
- Tissue- and Expression Level-Specific Chromatin Looping at Maize b1 Epialleles
- (2009) M. Louwers et al. PLANT CELL
- Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
- (2009) E. Lieberman-Aiden et al. SCIENCE
- Direct Repression of KNOX Loci by the ASYMMETRIC LEAVES1 Complex of Arabidopsis
- (2008) M. Guo et al. PLANT CELL
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExplorePublish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn More