Submergence and Waterlogging Stress in Plants: A Review Highlighting Research Opportunities and Understudied Aspects

Regulatory cascade involving transcriptional and N-end rule pathways in rice under submergence

(2019) Chih-Cheng Lin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Scaling up agricultural interventions: Case studies of climate-smart agriculture

(2018) Olaf Westermann et al.   AGRICULTURAL SYSTEMS

Elevation of cytosolic Ca 2+ in response to energy deficiency in plants: the general mechanism of adaptation to low oxygen stress

(2018) Abir U. Igamberdiev et al.   BIOCHEMICAL JOURNAL

Analysis of Brachypodium miRNA targets: evidence for diverse control during stress and conservation in bioenergy crops

(2018) Karl R. Franke et al.   BMC GENOMICS

The Arabidopsis bZIP transcription factor family — an update

(2018) Wolfgang Dröge-Laser et al.   CURRENT OPINION IN PLANT BIOLOGY

Energy-crises in well-aerated and anoxic tissue: does tolerance require the same specific proteins and energy-efficient transport?

(2018) Hank Greenway et al.   FUNCTIONAL PLANT BIOLOGY

Nitrate Reductases Are Relocalized to the Nucleus by AtSIZ1 and Their Levels Are Negatively Regulated by COP1 and Ammonium

(2018) Joo Kim et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

The Plant Cysteine Oxidases fromArabidopsis thalianaare kinetically tailored to act as oxygen sensors

(2018) Mark D. White et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

A transcription factor network responsive to high CO2/hypoxia is involved in deastringency in persimmon fruit

(2018) Qing-gang Zhu et al.   JOURNAL OF EXPERIMENTAL BOTANY

The fungal phytotoxin lasiojasmonate A activates the plant jasmonic acid pathway

(2018) Andrea Chini et al.   JOURNAL OF EXPERIMENTAL BOTANY

Shortened Basal Internodes Encodes a Gibberellin 2-Oxidase and Contributes to Lodging Resistance in Rice

(2018) Chang Liu et al.   Molecular Plant

Hypoxia and the ERFVII Transcription Factor HRE2 Promote Adventitious Root Elongation in Arabidopsis

(2018) Emese Eysholdt-Derzsó et al.   PLANT BIOLOGY

Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness

(2018) Lorenzo Pedrotti et al.   PLANT CELL

Time-Course Transcriptomics Analysis Reveals Key Responses of Submerged Deepwater Rice to Flooding

(2018) Anzu Minami et al.   PLANT PHYSIOLOGY

Mutations in a subfamily of abscisic acid receptor genes promote rice growth and productivity

(2018) Chunbo Miao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A stress recovery signaling network for enhanced flooding tolerance inArabidopsis thaliana

(2018) Elaine Yeung et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

CRISPR/Cas9-mediated gene targeting in Arabidopsis using sequential transformation

(2018) Daisuke Miki et al.   Nature Communications

No yield penalty under favorable conditions paving the way for successful adoption of flood tolerant rice

(2018) Manzoor H. Dar et al.   Scientific Reports

miR156/SPL10 Modulates Lateral Root Development, Branching and Leaf Morphology in Arabidopsis by Silencing AGAMOUS-LIKE 79

(2018) Ruimin Gao et al.   Frontiers in Plant Science

A method for the production and expedient screening of CRISPR/Cas9-mediated non-transgenic mutant plants

(2018) Longzheng Chen et al.   Horticulture Research

CRISPR plants now subject to tough GM laws in European Union

(2018) Ewen Callaway   NATURE

Distinct branches of the N-end rule pathway modulate the plant immune response

(2018) Jorge Vicente et al.   NEW PHYTOLOGIST

Ethylene-gibberellin signaling underlies adaptation of rice to periodic flooding

(2018) Takeshi Kuroha et al.   SCIENCE

Glutamate triggers long-distance, calcium-based plant defense signaling

(2018) Masatsugu Toyota et al.   SCIENCE

Improving Flooding Tolerance of Crop Plants

(2018) Angelika Mustroph   Agronomy-Basel

Soil and water bioengineering: Practice and research needs for reconciling natural hazard control and ecological restoration

(2018) F. Rey et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Redox state-dependent modulation of plant SnRK1 kinase activity differs from AMPK regulation in animals

(2017) Bernhard Wurzinger et al.   FEBS LETTERS

Developmental Restriction of Retrotransposition Activated in Arabidopsis by Environmental Stress

(2017) Hervé Gaubert et al.   GENETICS

Identification of the Submergence Tolerance QTL Come Quick Drowning1 (CQD1) in Arabidopsis thaliana

(2017) Melis Akman et al.   JOURNAL OF HEREDITY

Organ-specific proteomics of soybean seedlings under flooding and drought stresses

(2017) Xin Wang et al.   Journal of Proteomics

A study of allelic diversity underlying flowering-time adaptation in maize landraces

(2017) J Alberto Romero Navarro et al.   NATURE GENETICS

Exploiting induced and natural epigenetic variation for crop improvement

(2017) Nathan M. Springer et al.   NATURE REVIEWS GENETICS

Community recommendations on terminology and procedures used in flooding and low oxygen stress research

(2017) Rashmi Sasidharan et al.   NEW PHYTOLOGIST

Natural antisense transcripts are significantly involved in regulation of drought stress in maize

(2017) Jie Xu et al.   NUCLEIC ACIDS RESEARCH

Hypoxia Sensing in Plants: On a Quest for Ion Channels as Putative Oxygen Sensors

(2017) Feifei Wang et al.   PLANT AND CELL PHYSIOLOGY

An NADPH Oxidase RBOH Functions in Rice Roots during Lysigenous Aerenchyma Formation under Oxygen-Deficient Conditions

(2017) Takaki Yamauchi et al.   PLANT CELL

Rice SUB1A constrains remodelling of the transcriptome and metabolome during submergence to facilitate post-submergence recovery

(2017) Anna M. Locke et al.   PLANT CELL AND ENVIRONMENT

Root Bending Is Antagonistically Affected by Hypoxia and ERF-Mediated Transcription via Auxin Signaling

(2017) Emese Eysholdt-Derzsó et al.   PLANT PHYSIOLOGY

Polysomes, Stress Granules, and Processing Bodies: A Dynamic Triumvirate Controlling Cytoplasmic mRNA Fate and Function

(2017) Thanin Chantarachot et al.   PLANT PHYSIOLOGY

Jasmonate Regulates Plant Responses to Postsubmergence Reoxygenation through Transcriptional Activation of Antioxidant Synthesis

(2017) Li-Bing Yuan et al.   PLANT PHYSIOLOGY

Gene Regulation and Survival under Hypoxia Requires Starch Availability and Metabolism

(2017) Elena Loreti et al.   PLANT PHYSIOLOGY

Signal Dynamics and Interactions during Flooding Stress

(2017) Rashmi Sasidharan et al.   PLANT PHYSIOLOGY

Regulation of Root Traits for Internal Aeration and Tolerance to Soil Waterlogging-Flooding Stress

(2017) Takaki Yamauchi et al.   PLANT PHYSIOLOGY

Primary root growth in Arabidopsis thaliana is inhibited by the miR159 mediated repression of MYB33 , MYB65 and MYB101

(2017) Tao Xue et al.   PLANT SCIENCE

1-Methylcylopropene and controlled atmosphere modulate oxidative stress metabolism and reduce senescence-related disorders in stored pear fruit

(2017) Geoffrey B. Lum et al.   POSTHARVEST BIOLOGY AND TECHNOLOGY

Engineering the lodging resistance mechanism of post-Green Revolution rice to meet future demands

(2017) Ko HIRANO et al.   PROCEEDINGS OF THE JAPAN ACADEMY SERIES B-PHYSICAL AND BIOLOGICAL SCIENCES

Hydrologic regulation of plant rooting depth

(2017) Ying Fan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metabolic recycling of ammonia via glutamate dehydrogenase supports breast cancer biomass

(2017) Jessica B. Spinelli et al.   SCIENCE

Nitrate Reductase Regulates Plant Nitric Oxide Homeostasis

(2017) Alejandro Chamizo-Ampudia et al.   TRENDS IN PLANT SCIENCE

Plant cysteine oxidases are dioxygenases that directly enable arginyl transferase-catalysed arginylation of N-end rule targets

(2017) Mark D. White et al.   Nature Communications

RF-CLASS: A remote-sensing-based flood crop loss assessment cyber-service system for supporting crop statistics and insurance decision-making

(2017) Liping Di et al.   Journal of Integrative Agriculture

Biotechnological Strategies to Improve Plant Biomass Quality for Bioethanol Production

(2017) Julián Mario Peña-Castro et al.   Biomed Research International

Regulation of rice root development by a retrotransposon acting as a microRNA sponge

(2017) Jungnam Cho et al.   eLife

Bulked Segregant RNA-seq Reveals Differential Expression and SNPs of Candidate Genes Associated with Waterlogging Tolerance in Maize

(2017) Hewei Du et al.   Frontiers in Plant Science

Differentially Expressed microRNAs and Target Genes Associated with Plastic Internode Elongation in Alternanthera philoxeroides in Contrasting Hydrological Habitats

(2017) Gengyun Li et al.   Frontiers in Plant Science

Identification of Submergence-Responsive MicroRNAs and Their Targets Reveals Complex MiRNA-Mediated Regulatory Networks in Lotus (Nelumbo nucifera Gaertn)

(2017) Qijiang Jin et al.   Frontiers in Plant Science

Multilevel Regulation of Abiotic Stress Responses in Plants

(2017) David C. Haak et al.   Frontiers in Plant Science

Developmental Restriction of Retrotransposition Activated in Arabidopsis by Environmental Stress

(2017) Hervé Gaubert et al.   GENETICS

Phytohormonal crosstalk modulates the expression of miR166/165s, target Class III HD-ZIPs, and KANADI genes during root growth in Arabidopsis thaliana

(2017) Archita Singh et al.   Scientific Reports

Elucidation of the molecular responses to waterlogging in Sesbania cannabina roots by transcriptome profiling

(2017) Cheng-Gang Ren et al.   Scientific Reports

Oxygen absorption by adventitious roots promotes the survival of completely submerged terrestrial plants

(2016) Qiaoli Ayi et al.   ANNALS OF BOTANY

Growth, yield, fiber content and lodging resistance in eight varieties of Cenchrus purpureus (Schumach.) Morrone intended as energy crop

(2016) José A. Rueda et al.   BIOMASS & BIOENERGY

A Potassium-Dependent Oxygen Sensing Pathway Regulates Plant Root Hydraulics

(2016) Zaigham Shahzad et al.   CELL

Rapid Classification of Coffee Products by Data Mining Models from Direct Electrospray and Plasma-Based Mass Spectrometry Analyses

(2016) Roberto Gamboa-Becerra et al.   Food Analytical Methods

Flood-induced agricultural loss across China and impacts from climate indices

(2016) Qiang Zhang et al.   GLOBAL AND PLANETARY CHANGE

Quantitative phosphoproteomics of protein kinase SnRK1 regulated protein phosphorylation in Arabidopsis under submergence

(2016) Hsing-Yi Cho et al.   JOURNAL OF EXPERIMENTAL BOTANY

Tissue-specific root ion profiling reveals essential roles of the CAX and ACA calcium transport systems in response to hypoxia in Arabidopsis

(2016) Feifei Wang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Creating Order from Chaos: Epigenome Dynamics in Plants with Complex Genomes

(2016) Nathan M. Springer et al.   PLANT CELL

A Positive Feedback Loop Governed by SUB1A1 Interaction with MITOGEN-ACTIVATED PROTEIN KINASE3 Imparts Submergence Tolerance in Rice

(2016) Pallavi Singh et al.   PLANT CELL

Nitric oxide-fixation by non-symbiotic haemoglobin proteins inArabidopsis thalianaunder N-limited conditions

(2016) Gitto Thomas Kuruthukulangarakoola et al.   PLANT CELL AND ENVIRONMENT

A dual system formed by the ARC and NR molybdoenzymes mediates nitrite-dependent NO production inChlamydomonas

(2016) Alejandro Chamizo-Ampudia et al.   PLANT CELL AND ENVIRONMENT

Transcriptomes of eight Arabidopsis thaliana accessions reveal core conserved, genotype- and organ-specific responses to flooding stress

(2016) Hans Van Veen et al.   PLANT PHYSIOLOGY

A Co-Opted Hormonal Cascade Activates Dormant Adventitious Root Primordia upon Flooding inSolanumdulcamara

(2016) Thikra Dawood et al.   PLANT PHYSIOLOGY

A Universal Stress Protein Involved in Oxidative Stress Is a Phosphorylation Target for Protein Kinase CIPK6

(2016) Emilio Gutiérrez-Beltrán et al.   PLANT PHYSIOLOGY

Oxygen Sensing via the Ethylene Response Transcription Factor RAP2.12 Affects Plant Metabolism and Performance under Both Normoxia and Hypoxia

(2016) Melanie Verena Paul et al.   PLANT PHYSIOLOGY

Ethylene-Regulated Glutamate Dehydrogenase Fine-Tunes Metabolism during Anoxia-Reoxygenation

(2016) Kuen-Jin Tsai et al.   PLANT PHYSIOLOGY

Meta-analysis of major QTL for abiotic stress tolerance in barley and implications for barley breeding

(2016) Xuechen Zhang et al.   PLANTA

Molecular Insights into the Enigmatic Metabolic Regulator, SnRK1

(2016) Shane Emanuelle et al.   TRENDS IN PLANT SCIENCE

Efficient and transgene-free genome editing in wheat through transient expression of CRISPR/Cas9 DNA or RNA

(2016) Yi Zhang et al.   Nature Communications

Unlocking the genetic diversity of Creole wheats

(2016) Prashant Vikram et al.   Scientific Reports

Transcriptomic analysis of submergence-tolerant and sensitive Brachypodium distachyon ecotypes reveals oxidative stress as a major tolerance factor

(2016) Irma Karla Rivera-Contreras et al.   Scientific Reports

Extreme Hypoxic Conditions Induce Selective Molecular Responses and Metabolic Reset in Detached Apple Fruit

(2016) Dubravka Cukrov et al.   Frontiers in Plant Science

Moving through the Stressed Genome: Emerging Regulatory Roles for Transposons in Plant Stress Response

(2016) Pooja Negi et al.   Frontiers in Plant Science

Oxygen Sensing and Signaling

(2015) Joost T. van Dongen et al.   Annual Review of Plant Biology

Controlled activation of retrotransposition for plant breeding

(2015) Jerzy Paszkowski   CURRENT OPINION IN BIOTECHNOLOGY

Can chilling tolerance of C4 photosynthesis in Miscanthus be transferred to sugarcane?

(2015) Katarzyna Głowacka et al.   Global Change Biology Bioenergy

Plant Adaptation to Multiple Stresses during Submergence and Following Desubmergence

(2015) Bishal Tamang et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Core clock,SUB1, andABARgenes mediate flooding and drought responses via alternative splicing in soybean

(2015) Naeem H. Syed et al.   JOURNAL OF EXPERIMENTAL BOTANY

Oxyl and Hydroxyl Radical Transfer in Mitochondrial Amidoxime Reducing Component-Catalyzed Nitrite Reduction

(2015) Jing Yang et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Genetic mechanisms of abiotic stress tolerance that translate to crop yield stability

(2015) Michael V. Mickelbart et al.   NATURE REVIEWS GENETICS

Flood adaptive traits and processes: an overview

(2015) Laurentius A. C. J. Voesenek et al.   NEW PHYTOLOGIST

Enhanced waterlogging tolerance in barley by manipulation of expression of the N-end rule pathway E3 ligase PROTEOLYSIS6

(2015) Guillermina M. Mendiondo et al.   PLANT BIOTECHNOLOGY JOURNAL

Manipulating microRNAs for improved biomass and biofuels from plant feedstocks

(2015) Jennifer Lynn Trumbo et al.   PLANT BIOTECHNOLOGY JOURNAL

Redundant ERF-VII transcription factors bind an evolutionarily-conserved cis-motif to regulate hypoxia-responsive gene expression in Arabidopsis

(2015) Philipp Gasch et al.   PLANT CELL

The key regulator of submergence tolerance, SUB1A , promotes photosynthetic and metabolic recovery from submergence damage in rice leaves

(2015) Jasper Benedict Alpuerto et al.   PLANT CELL AND ENVIRONMENT

The stability and nuclear localization of the transcription factor RAP2.12 are dynamically regulated by oxygen concentration

(2015) MONIKA KOSMACZ et al.   PLANT CELL AND ENVIRONMENT

The low oxygen, oxidative and osmotic stress responses synergistically act through the ethylene response factor VII genesRAP2.12,RAP2.2andRAP2.3

(2015) Csaba Papdi et al.   PLANT JOURNAL

The role of miR156/SPLs modules in Arabidopsis lateral root development

(2015) Niu Yu et al.   PLANT JOURNAL

Regulation of Primary Metabolism in Response to Low Oxygen Availability as Revealed by Carbon and Nitrogen Isotope Redistribution

(2015) Carla António et al.   PLANT PHYSIOLOGY

Arabidopsis CML38, a Calcium Sensor That Localizes to Ribonucleoprotein Complexes under Hypoxia Stress

(2015) Ansul Lokdarshi et al.   PLANT PHYSIOLOGY

TheGreening after Extended Darkness1Is an N-End Rule Pathway Mutant with High Tolerance to Submergence and Starvation

(2015) Willi Riber et al.   PLANT PHYSIOLOGY

Ethylene-Mediated Regulation of A2-Type CYCLINs Modulates Hyponastic Growth in Arabidopsis

(2015) Joanna K. Polko et al.   PLANT PHYSIOLOGY

Constitutively expressed ERF-VII transcription factors redundantly activate the core anaerobic response in Arabidopsis thaliana

(2015) Liem T. Bui et al.   PLANT SCIENCE

Arabidopsis MSH1 mutation alters the epigenome and produces heritable changes in plant growth

(2015) Kamaldeep S. Virdi et al.   Nature Communications

SnRK1-triggered switch of bZIP63 dimerization mediates the low-energy response in plants

(2015) Andrea Mair et al.   eLife

Seasonal dynamics of bacterial and archaeal methanogenic communities in flooded rice fields and effect of drainage

(2015) Björn Breidenbach et al.   Frontiers in Microbiology

A trehalose-6-phosphate phosphatase enhances anaerobic germination tolerance in rice

(2015) Tobias Kretzschmar et al.   Nature Plants

Genetic and Molecular Characterization of Submergence Response Identifies Subtol6 as a Major Submergence Tolerance Locus in Maize

(2015) Malachy T. Campbell et al.   PLoS One

Nitric Oxide Sensing in Plants Is Mediated by Proteolytic Control of Group VII ERF Transcription Factors

(2014) Daniel J. Gibbs et al.   MOLECULAR CELL

Postharvest treatments of fresh produce

(2014) P. V. Mahajan et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES

Group VII Ethylene Response Factor diversification and regulation in four species from flood-prone environments

(2014) HANS van VEEN et al.   PLANT CELL AND ENVIRONMENT

Gibberellin biosynthesis and signal transduction is essential for internode elongation in deepwater rice

(2014) MADOKA AYANO et al.   PLANT CELL AND ENVIRONMENT

Balanced activity of microRNA166/165 and its target transcripts from the class III homeodomain-leucine zipper family regulates root growth in Arabidopsis thaliana

(2014) Archita Singh et al.   PLANT CELL REPORTS

A Secreted Protein with Plant-Specific Cysteine-Rich Motif Functions as a Mannose-Binding Lectin That Exhibits Antifungal Activity

(2014) T. Miyakawa et al.   PLANT PHYSIOLOGY

Large-Scale Identification of Gibberellin-Related Transcription Factors Defines Group VII ETHYLENE RESPONSE FACTORS as Functional DELLA Partners

(2014) N. M.-d. la Rosa et al.   PLANT PHYSIOLOGY

Hit-and-run transcriptional control by bZIP1 mediates rapid nutrient signaling in Arabidopsis

(2014) A. Para et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Selective mRNA sequestration by OLIGOURIDYLATE-BINDING PROTEIN 1 contributes to translational control during hypoxia inArabidopsis

(2014) Reed Sorenson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The new frontier of genome engineering with CRISPR-Cas9

(2014) J. A. Doudna et al.   SCIENCE

A Trihelix DNA Binding Protein Counterbalances Hypoxia-Responsive Transcriptional Activation in Arabidopsis

(2014) Beatrice Giuntoli et al.   PLOS BIOLOGY

Learning from nature: the use of non-model species to identify novel acclimations to flooding stress

(2014) L. A. C. J. Voesenek et al.   AoB Plants

Elucidation of the molecular responses to waterlogging in Jatropha roots by transcriptome profiling

(2014) Piyada Juntawong et al.   Frontiers in Plant Science

The role of ethylene and ROS in salinity, heavy metal, and flooding responses in rice

(2014) Bianka Steffens   Frontiers in Plant Science

Genetic mechanisms conferring adaptation to submergence and drought in rice: simple or complex?

(2013) Takeshi Fukao et al.   CURRENT OPINION IN PLANT BIOLOGY

Sugarcane as constructed wetland vegetation: Preliminary studies

(2013) Dina M.R. Mateus et al.   ECOLOGICAL ENGINEERING

The contribution of submergence-tolerant (Sub1) rice varieties to food security in flood-prone rainfed lowland areas in Asia

(2013) Abdelbagi M. Ismail et al.   FIELD CROPS RESEARCH

Molybdenum metabolism in plants

(2013) Manuel Tejada-Jiménez et al.   Metallomics

Evolution of crop species: genetics of domestication and diversification

(2013) Rachel S. Meyer et al.   NATURE REVIEWS GENETICS

APETALA2/Ethylene Responsive Factor (AP2/ERF) transcription factors: mediators of stress responses and developmental programs

(2013) Francesco Licausi et al.   NEW PHYTOLOGIST

SUB1A-mediated submergence tolerance response in rice involves differential regulation of the brassinosteroid pathway

(2013) Aaron J. Schmitz et al.   NEW PHYTOLOGIST

Physiological and biotechnological implications of transcript-level variation under abiotic stress

(2013) D. H. Sanchez   PLANT BIOLOGY

Two Rumex Species from Contrasting Hydrological Niches Regulate Flooding Tolerance through Distinct Mechanisms

(2013) H. van Veen et al.   PLANT CELL

Submergence Confers Immunity Mediated by the WRKY22 Transcription Factor in Arabidopsis

(2013) F.-C. Hsu et al.   PLANT CELL

Biogenesis, Turnover, and Mode of Action of Plant MicroRNAs

(2013) K. Rogers et al.   PLANT CELL

Dynamic QTL Analysis and Candidate Gene Mapping for Waterlogging Tolerance at Maize Seedling Stage

(2013) Khalid A. Osman et al.   PLoS One

Translational dynamics revealed by genome-wide profiling of ribosome footprints in Arabidopsis

(2013) P. Juntawong et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Photosynthetic gas exchange, chlorophyll fluorescence, antioxidant enzymes, and growth responses of Jatropha curcas during soil flooding

(2013) Krishan Kumar VERMA et al.   TURKISH JOURNAL OF BOTANY

Flood-tolerant rice reduces yield variability and raises expected yield, differentially benefitting socially disadvantaged groups

(2013) Manzoor H. Dar et al.   Scientific Reports

Barley responses to combined waterlogging and salinity stress: separating effects of oxygen deprivation and elemental toxicity

(2013) Fanrong Zeng et al.   Frontiers in Plant Science

Tolerance of anaerobic conditions caused by flooding during germination and early growth in rice (Oryza sativa L.)

(2013) Berta Miro et al.   Frontiers in Plant Science

Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon

(2013) Dong-Hoon Jeong et al.   GENOME BIOLOGY

Screening for tolerance to periodic flooding for cane grown for sucrose and bioenergy

(2012) R.P. Viator et al.   BIOMASS & BIOENERGY

Identification of novel and conserved Populus tomentosa microRNA as components of a response to water stress

(2012) Yuanyuan Ren et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Miscanthus × giganteusandArundo donaxshoot and rhizome tolerance of extreme moisture stress

(2012) J. Jeremiah Mann et al.   Global Change Biology Bioenergy

Comparison of GC-MS and NMR for Metabolite Profiling of Rice Subjected to Submergence Stress

(2012) Gregory A. Barding et al.   JOURNAL OF PROTEOME RESEARCH

Defining the core Arabidopsis thaliana root microbiome

(2012) Derek S. Lundberg et al.   NATURE

Genome-wide identification and analysis of microRNA responding to long-term waterlogging in crown roots of maize seedlings

(2012) Lihong Zhai et al.   PHYSIOLOGIA PLANTARUM

Regulatory Functions of SnRK1 in Stress-Responsive Gene Expression and in Plant Growth and Development

(2012) Y.-H. Cho et al.   PLANT PHYSIOLOGY

The Submergence Tolerance Gene SUB1A Delays Leaf Senescence under Prolonged Darkness through Hormonal Regulation in Rice

(2012) T. Fukao et al.   PLANT PHYSIOLOGY

Waterproofing Crops: Effective Flooding Survival Strategies

(2012) J. Bailey-Serres et al.   PLANT PHYSIOLOGY

Involvement of nitrite in the nitrate-mediated modulation of fermentative metabolism and nitric oxide production of soybean roots during hypoxia

(2012) Halley C. Oliveira et al.   PLANTA

Characterization of miRNAs in Response to Short-Term Waterlogging in Three Inbred Lines of Zea mays

(2012) Zhijie Liu et al.   PLoS One

Physiological and morphological responses to flooding with fresh or saline water in Jatropha curcas

(2011) Vicente Gimeno et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

Arabidopsis calcium-binding mitochondrial carrier proteins as potential facilitators of mitochondrial ATP-import and plastid SAM-import

(2011) Simon Stael et al.   FEBS LETTERS

Role of internal atmosphere on fruit ripening and storability—a review

(2011) Vijay Paul et al.   JOURNAL OF FOOD SCIENCE AND TECHNOLOGY-MYSORE

Differential Metabolic Regulation Governed by the Rice SUB1A Gene during Submergence Stress and Identification of Alanylglycine by 1H NMR Spectroscopy

(2011) Gregory A. Barding et al.   JOURNAL OF PROTEOME RESEARCH

Oxygen sensing in plants is mediated by an N-end rule pathway for protein destabilization

(2011) Francesco Licausi et al.   NATURE

Homeostatic response to hypoxia is regulated by the N-end rule pathway in plants

(2011) Daniel J. Gibbs et al.   NATURE

The sucrose-regulated Arabidopsis transcription factor bZIP11 reprograms metabolism and regulates trehalose metabolism

(2011) Jingkun Ma et al.   NEW PHYTOLOGIST

Molecular characterization of the submergence response of the Arabidopsis thaliana ecotype Columbia

(2011) Seung Cho Lee et al.   NEW PHYTOLOGIST

Heterodimers of theArabidopsisTranscription Factors bZIP1 and bZIP53 Reprogram Amino Acid Metabolism during Low Energy Stress

(2011) Katrin Dietrich et al.   PLANT CELL

The Submergence Tolerance Regulator SUB1A Mediates Crosstalk between Submergence and Drought Tolerance in Rice

(2011) Takeshi Fukao et al.   PLANT CELL

Expression of rice SUB1A and SUB1C transcription factors in Arabidopsis uncovers flowering inhibition as a submergence tolerance mechanism

(2011) Julián M. Peña-Castro et al.   PLANT JOURNAL

Growth Arrest by Trehalose-6-Phosphate: An Astonishing Case of Primary Metabolite Control over Growth by Way of the SnRK1 Signaling Pathway

(2011) Thierry L. Delatte et al.   PLANT PHYSIOLOGY

Insights into Hypoxic Systemic Responses Based on Analyses of Transcriptional Regulation in Arabidopsis

(2011) Fu-Chiun Hsu et al.   PLoS One

Overexpression of the maize Corngrass1 microRNA prevents flowering, improves digestibility, and increases starch content of switchgrass

(2011) G. S. Chuck et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

MicroRNA networks and developmental plasticity in plants

(2011) Ignacio Rubio-Somoza et al.   TRENDS IN PLANT SCIENCE

Arabidopsis nitrate reductase activity is stimulated by the E3 SUMO ligase AtSIZ1

(2011) Bong Soo Park et al.   Nature Communications

Towards Establishment of a Rice Stress Response Interactome

(2011) Young-Su Seo et al.   PLoS Genetics

MicroRNA-mediated signaling involved in plant root development

(2010) Yijun Meng et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Desiccation of leaves after de-submergence is one cause for intolerance to complete submergence of the rice cultivar IR 42

(2010) Timothy L. Setter et al.   FUNCTIONAL PLANT BIOLOGY

Regulation of flowering time and floral patterning by miR172

(2010) Qian-Hao Zhu et al.   JOURNAL OF EXPERIMENTAL BOTANY

SQUAMOSA Promoter-Binding Protein-Like Transcription Factors: Star Players for Plant Growth and Development

(2010) Xiaobo Chen et al.   Journal of Integrative Plant Biology

Hypoxia responsive gene expression is mediated by various subsets of transcription factors and miRNAs that are determined by the actual oxygen availability

(2010) Francesco Licausi et al.   NEW PHYTOLOGIST

Identification of genes expressed in maize root cortical cells during lysigenous aerenchyma formation using laser microdissection and microarray analyses

(2010) Imene Rajhi et al.   NEW PHYTOLOGIST

miR390,Arabidopsis TAS3tasiRNAs, and TheirAUXIN RESPONSE FACTORTargets Define an Autoregulatory Network Quantitatively Regulating Lateral Root Growth

(2010) Elena Marin et al.   PLANT CELL

The Submergence Tolerance Regulator Sub1A Mediates Stress-Responsive Expression of AP2/ERF Transcription Factors

(2010) K.-H. Jung et al.   PLANT PHYSIOLOGY

Cross-Kingdom Comparison of Transcriptomic Adjustments to Low-Oxygen Stress Highlights Conserved and Plant-Specific Responses

(2010) A. Mustroph et al.   PLANT PHYSIOLOGY

Epigenetic reprogramming during vegetative phase change in maize

(2010) H. Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Submergence Tolerant Rice: SUB1’s Journey from Landrace to Modern Cultivar

(2010) Julia Bailey-Serres et al.   Rice

Small RNAs and Their Roles in Plant Development

(2009) Xuemei Chen   Annual Review of Cell and Developmental Biology

Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis

(2009) Dov Moldovan et al.   JOURNAL OF EXPERIMENTAL BOTANY

The ethylene response factors SNORKEL1 and SNORKEL2 allow rice to adapt to deep water

(2009) Yoko Hattori et al.   NATURE

Resolving the Role of Plant Glutamate Dehydrogenase. I. in vivo Real Time Nuclear Magnetic Resonance Spectroscopy Experiments

(2009) Soraya Labboun et al.   PLANT AND CELL PHYSIOLOGY

Phenotypic Plasticity of Adventitious Rooting in Arabidopsis Is Controlled by Complex Regulation of AUXIN RESPONSE FACTOR Transcripts and MicroRNA Abundance

(2009) L. Gutierrez et al.   PLANT CELL

Inhibition of SNF1-Related Protein Kinase1 Activity and Regulation of Metabolic Pathways by Trehalose-6-Phosphate

(2009) Y. Zhang et al.   PLANT PHYSIOLOGY

The Role of WRKY Transcription Factors in Plant Immunity

(2009) S. P. Pandey et al.   PLANT PHYSIOLOGY

Profiling translatomes of discrete cell populations resolves altered cellular priorities during hypoxia in Arabidopsis

(2009) A. Mustroph et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Coordinated Responses to Oxygen and Sugar Deficiency Allow Rice Seedlings to Tolerate Flooding

(2009) K.-W. Lee et al.   Science Signaling

Getting the message across: cytoplasmic ribonucleoprotein complexes

(2009) J. Bailey-Serres et al.   TRENDS IN PLANT SCIENCE

Submergence-responsive MicroRNAs are Potentially Involved in the Regulation of Morphological and Metabolic Adaptations in Maize Root Cells

(2008) Zuxin Zhang et al.   ANNALS OF BOTANY

Review of wheat improvement for waterlogging tolerance in Australia and India: the importance of anaerobiosis and element toxicities associated with different soils

(2008) T. L. Setter et al.   ANNALS OF BOTANY

Mechanisms associated with tolerance to flooding during germination and early seedling growth in rice (Oryza sativa)

(2008) Abdelbagi M. Ismail et al.   ANNALS OF BOTANY

Development of submergence-tolerant rice cultivars: the Sub1 locus and beyond

(2008) Endang M. Septiningsih et al.   ANNALS OF BOTANY

Flooding Stress: Acclimations and Genetic Diversity

(2008) J. Bailey-Serres et al.   Annual Review of Plant Biology

Stakeholders’ views in reducing rural vulnerability to natural disasters in Southern Mexico: Hazard exposure and coping and adaptive capacity

(2008) Sergio O. Saldaña-Zorrilla   GLOBAL ENVIRONMENTAL CHANGE-HUMAN AND POLICY DIMENSIONS

Selective mRNA translation coordinates energetic and metabolic adjustments to cellular oxygen deprivation and reoxygenation inArabidopsis thaliana

(2008) Cristina Branco-Price et al.   PLANT JOURNAL

The microRNA regulated SBP-box genes SPL9 and SPL15 control shoot maturation in Arabidopsis

(2008) Stefan Schwarz et al.   PLANT MOLECULAR BIOLOGY

Submergence tolerance conferred by Sub1A is mediated by SLR1 and SLRL1 restriction of gibberellin responses in rice

(2008) T. Fukao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA