Genome-wide DNA Methylation analysis in response to salinity in the model plant caliph medic (Medicago truncatula)

Screening of Date Palm (Phoenix dactylifera L.) Cultivars for Salinity Tolerance

(2017) Latifa Al Kharusi et al.   Forests

Editorial: Epigenetic Modifications Associated with Abiotic and Biotic Stresses in Plants: An Implication for Understanding Plant Evolution

(2017) Mahmoud W. Yaish   Frontiers in Plant Science

The Role of Na+ and K+ Transporters in Salt Stress Adaptation in Glycophytes

(2017) Dekoum V. M. Assaha et al.   Frontiers in Physiology

Salt stress alters DNA methylation levels in alfalfa (Medicago spp)

(2016) A. Al-Lawati et al.   GENETICS AND MOLECULAR RESEARCH

Transgenerational response to stress in plants and its application for breeding

(2016) Andriy Bilichak et al.   JOURNAL OF EXPERIMENTAL BOTANY

Mobile small RNAs regulate genome-wide DNA methylation

(2016) Mathew G. Lewsey et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identification and Expression Analysis of BURP Domain-Containing Genes in Medicago truncatula

(2016) Yuan Li et al.   Frontiers in Plant Science

Control of plant cell differentiation by histone modification and DNA methylation

(2015) Momoko Ikeuchi et al.   CURRENT OPINION IN PLANT BIOLOGY

Short Communication Proline accumulation is a general response to abiotic stress in the date palm tree (Phoenix dactylifera L.)

(2015) M.W. Yaish   GENETICS AND MOLECULAR RESEARCH

Examining the Causes and Consequences of Context-Specific Differential DNA Methylation in Maize

(2015) Qing Li et al.   PLANT PHYSIOLOGY

Regulatory link between DNA methylation and active demethylation inArabidopsis

(2015) Mingguang Lei et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Salt Tolerant and Sensitive Rice Varieties Display Differential Methylome Flexibility under Salt Stress

(2015) Liliana J. Ferreira et al.   PLoS One

Genome-Wide Epigenetic Regulation of Gene Transcription in Maize Seeds

(2015) Xiaoduo Lu et al.   PLoS One

Divergent DNA methylation patterns associated with gene expression in rice cultivars with contrasting drought and salinity stress response

(2015) Rohini Garg et al.   Scientific Reports

Cytosine DNA Methylation Is Found in Drosophila melanogaster but Absent in Saccharomyces cerevisiae, Schizosaccharomyces pombe, and Other Yeast Species

(2014) Floriana Capuano et al.   ANALYTICAL CHEMISTRY

Effects of cytosine methylation on transcription factor binding sites

(2014) Yulia A Medvedeva et al.   BMC GENOMICS

Shotgun Bisulfite Sequencing of the Betula platyphylla Genome Reveals the Tree’s DNA Methylation Patterning

(2014) Chang Su et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Induced and Constitutive DNA Methylation in a Salinity-Tolerant Wheat Introgression Line

(2014) Meng Wang et al.   PLANT AND CELL PHYSIOLOGY

Detection of Oxidation Products of 5-Methyl-2′-Deoxycytidine in Arabidopsis DNA

(2014) Shuo Liu et al.   PLoS One

Divergence of Gene Body DNA Methylation and Evolution of Plant Duplicate Genes

(2014) Jun Wang et al.   PLoS One

5-Hydroxymethylcytosine Is Not Present in Appreciable Quantities in Arabidopsis DNA

(2014) Robert M. Erdmann et al.   G3-Genes Genomes Genetics

Progressive 35S promoter methylation increases rapidly during vegetative development in transgenic Nicotiana attenuata plants

(2013) Arne Weinhold et al.   BMC PLANT BIOLOGY

Single-base resolution methylomes of tomato fruit development reveal epigenome modifications associated with ripening

(2013) Silin Zhong et al.   NATURE BIOTECHNOLOGY

Non-CG methylation patterns shape the epigenetic landscape in Arabidopsis

(2013) Hume Stroud et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

A Potential Role for CHH DNA Methylation in Cotton Fiber Growth Patterns

(2013) Xiang Jin et al.   PLoS One

Dynamic DNA cytosine methylation in the Populus trichocarpa genome: tissue-level variation and relationship to gene expression

(2012) Kelly J Vining et al.   BMC GENOMICS

Single-base resolution maps of cultivated and wild rice methylomes and regulatory roles of DNA methylation in plant gene expression

(2012) Xin Li et al.   BMC GENOMICS

The upregulation of thiamine (vitamin B1) biosynthesis in Arabidopsis thaliana seedlings under salt and osmotic stress conditions is mediated by abscisic acid at the early stages of this stress response

(2012) Maria Rapala-Kozik et al.   BMC PLANT BIOLOGY

BootstRatio: A web-based statistical analysis of fold-change in qPCR and RT-qPCR data using resampling methods

(2012) Ramon Clèries et al.   COMPUTERS IN BIOLOGY AND MEDICINE

Transgenerational maintenance of transgene body CG but not CHG and CHH methylation

(2012) Athanasios Dalakouras et al.   Epigenetics

CHH islands: de novo DNA methylation in near-gene chromatin regulation in maize

(2012) J. I. Gent et al.   GENOME RESEARCH

De Novo Pyrimidine Nucleotide Synthesis Mainly Occurs outside of Plastids, but a Previously Undiscovered Nucleobase Importer Provides Substrates for the Essential Salvage Pathway inArabidopsis

(2012) Sandra Witz et al.   PLANT CELL

Flavonoids as antioxidants in plants: Location and functional significance

(2012) Giovanni Agati et al.   PLANT SCIENCE

Salt Stress Induced Variation in DNA Methylation Pattern and Its Influence on Gene Expression in Contrasting Rice Genotypes

(2012) Ratna Karan et al.   PLoS One

Identification of troponin I and actin, alpha cardiac muscle 1 as potential biomarkers for hearts of electrically stimulated chickens

(2012) Azura Amid et al.   Proteome Science

Transposable Elements, Epigenetics, and Genome Evolution

(2012) N. V. Fedoroff   SCIENCE

Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications

(2011) Felix Krueger et al.   BIOINFORMATICS

5-Hydroxymethylcytosine Is Strongly Depleted in Human Cancers but Its Levels Do Not Correlate with IDH1 Mutations

(2011) S.-G. Jin et al.   CANCER RESEARCH

The role of epigenetic processes in controlling flowering time in plants exposed to stress

(2011) M. W. Yaish et al.   JOURNAL OF EXPERIMENTAL BOTANY

Impaired hydroxylation of 5-methylcytosine in myeloid cancers with mutant TET2

(2010) Myunggon Ko et al.   NATURE

Establishing, maintaining and modifying DNA methylation patterns in plants and animals

(2010) Julie A. Law et al.   NATURE REVIEWS GENETICS

Conservation and divergence of methylation patterning in plants and animals

(2010) S. Feng et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-Wide Evolutionary Analysis of Eukaryotic DNA Methylation

(2010) A. Zemach et al.   SCIENCE

Epigenetic Reprogramming in Plant and Animal Development

(2010) Suhua Feng et al.   SCIENCE

The MIQE Guidelines: Minimum Information for Publication of Quantitative Real-Time PCR Experiments

(2009) S. A. Bustin et al.   CLINICAL CHEMISTRY

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

Thiamin Confers Enhanced Tolerance to Oxidative Stress in Arabidopsis

(2009) M. Tunc-Ozdemir et al.   PLANT PHYSIOLOGY

Extensive Demethylation of Repetitive Elements During Seed Development Underlies Gene Imprinting

(2009) M. Gehring et al.   SCIENCE

High-throughput functional annotation and data mining with the Blast2GO suite

(2008) S. Gotz et al.   NUCLEIC ACIDS RESEARCH