Epigenetic signatures of stress adaptation and flowering regulation in response to extended drought and recovery in Zea mays

Effects of drought stress and water recovery on physiological responses and gene expression in maize seedlings

(2018) Xiangbo Zhang et al.   BMC PLANT BIOLOGY

Genome-wide analysis of maize CONSTANS-LIKE gene family and expression profiling under light/dark and abscisic acid treatment

(2018) Nannan Song et al.   GENE

Control of Maize Vegetative and Reproductive Development, Fertility, and rRNAs Silencing byHISTONE DEACETYLASE 108

(2018) Cristian Forestan et al.   GENETICS

Distinct gene networks modulate floral induction of autonomous maize and photoperiod-dependent teosinte

(2018) Mark A A Minow et al.   JOURNAL OF EXPERIMENTAL BOTANY

ZmCOL3 , a CCT gene represses flowering in maize by interfering with the circadian clock and activating expression of ZmCCT

(2018) Minliang Jin et al.   Journal of Integrative Plant Biology

Dual recognition of H3K4me3 and H3K27me3 by a plant histone reader SHL

(2018) Shuiming Qian et al.   Nature Communications

Control of Maize Vegetative and Reproductive Development, Fertility, and rRNAs Silencing byHISTONE DEACETYLASE 108

(2018) Cristian Forestan et al.   GENETICS

Epigenetic responses to abiotic stresses during reproductive development in cereals

(2018) Kevin Begcy et al.   Plant Reproduction

Global analysis of H3K4me3/H3K27me3 in Brachypodium distachyon reveals VRN3 as critical epigenetic regulation point in vernalization and provides insights into epigenetic memory

(2018) Qing Huan et al.   NEW PHYTOLOGIST

Dehydration Stress Memory: Gene Networks Linked to Physiological Responses During Repeated Stresses of Zea mays

(2018) Laetitia Virlouvet et al.   Frontiers in Plant Science

Evolutionary conservation and functional divergence of the LFK gene family play important roles in the photoperiodic flowering pathway of land plants

(2017) Ling Liu et al.   HEREDITY

Improved maize reference genome with single-molecule technologies

(2017) Yinping Jiao et al.   NATURE

Can’t remember to forget you: Chromatin-based priming of somatic stress responses

(2017) Isabel Bäurle   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Temporal dynamics of gene expression and histone marks at the Arabidopsis shoot meristem during flowering

(2017) Yuan You et al.   Nature Communications

Multilevel Regulation of Abiotic Stress Responses in Plants

(2017) David C. Haak et al.   Frontiers in Plant Science

A systems approach to a spatio-temporal understanding of the drought stress response in maize

(2017) Zhenyan Miao et al.   Scientific Reports

Abiotic Stress Signaling and Responses in Plants

(2016) Jian-Kang Zhu   CELL

Histone deacetylase HDA9 negatively regulates salt and drought stress responsiveness in Arabidopsis

(2016) Yu Zheng et al.   JOURNAL OF EXPERIMENTAL BOTANY

Stress-induced flowering: the third category of flowering response

(2016) Kiyotoshi Takeno   JOURNAL OF EXPERIMENTAL BOTANY

deepTools2: a next generation web server for deep-sequencing data analysis

(2016) Fidel Ramírez et al.   NUCLEIC ACIDS RESEARCH

Hd3a,RFT1andEhd1integrate photoperiodic and drought stress signals to delay the floral transition in rice

(2016) Francesca Galbiati et al.   PLANT CELL AND ENVIRONMENT

Genome-wide characterization of maize small RNA loci and their regulation in the required to maintain repression6-1 (rmr6-1) mutant and long-term abiotic stresses

(2016) Alice Lunardon et al.   PLANT PHYSIOLOGY

Competence to Flower: Age-Controlled Sensitivity to Environmental Cues

(2016) Youbong Hyun et al.   PLANT PHYSIOLOGY

Flowering Time-Regulated Genes in Maize Include the Transcription Factor ZmMADS1

(2016) Philipp Alter et al.   PLANT PHYSIOLOGY

Light affects salt stress-induced transcriptional memory ofP5CS1inArabidopsis

(2016) Xuan Jun Feng et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Stress-induced and epigenetic-mediated maize transcriptome regulation study by means of transcriptome reannotation and differential expression analysis

(2016) Cristian Forestan et al.   Scientific Reports

Transcription Factors and Plants Response to Drought Stress: Current Understanding and Future Directions

(2016) Rohit Joshi et al.   Frontiers in Plant Science

Spatiotemporal drought variability in the Mediterranean over the last 900 years

(2016) Benjamin I. Cook et al.   JOURNAL OF GEOPHYSICAL RESEARCH-ATMOSPHERES

Reconsidering plant memory: Intersections between stress recovery, RNA turnover, and epigenetics

(2016) P. A. Crisp et al.   Science Advances

A hit-and-run heat shock factor governs sustained histone methylation and transcriptional stress memory

(2015) J. La mke et al.   EMBO JOURNAL

The link between flowering time and stress tolerance

(2015) Kemal Kazan et al.   JOURNAL OF EXPERIMENTAL BOTANY

Gene expression regulation in roots under drought

(2015) Agnieszka Janiak et al.   JOURNAL OF EXPERIMENTAL BOTANY

The miR156/SPL Module, a Regulatory Hub and Versatile Toolbox, Gears up Crops for Enhanced Agronomic Traits

(2015) Hai Wang et al.   Molecular Plant

Regulation of Histone Methylation and Reprogramming of Gene Expression in the Rice Inflorescence Meristem

(2015) Xiaoyun Liu et al.   PLANT CELL

Transcriptional ‘memory’ of a stress: transient chromatin and memory (epigenetic) marks at stress-response genes

(2015) Zoya Avramova   PLANT JOURNAL

Drought Induces Distinct Growth Response, Protection, and Recovery Mechanisms in the Maize Leaf Growth Zone

(2015) Viktoriya Avramova et al.   PLANT PHYSIOLOGY

Transcription factor interaction with COMPASS-like complex regulates histone H3K4 trimethylation for specific gene expression in plants

(2015) Ze-Ting Song et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Time course of biochemical, physiological, and molecular responses to field-mimicked conditions of drought, salinity, and recovery in two maize lines

(2015) Francesco Morari et al.   Frontiers in Plant Science

GIGANTEA – an emerging story

(2015) Priyanka Mishra et al.   Frontiers in Plant Science

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Transcriptomic complexity in young maize primary roots in response to low water potentials

(2014) Nina Opitz et al.   BMC GENOMICS

Dehydration stress memory genes of Zea mays; comparison with Arabidopsis thaliana

(2014) Yong Ding et al.   BMC PLANT BIOLOGY

Genomics for drought resistance – getting down to earth

(2014) Abraham Blum   FUNCTIONAL PLANT BIOLOGY

H3K27me3 and H3K4me3 Chromatin Environment at Super-Induced Dehydration Stress Memory Genes of Arabidopsis thaliana

(2014) Ning Liu et al.   Molecular Plant

Different gene-specific mechanisms determine the ‘revised-response’ memory transcription patterns of a subset of A. thaliana dehydration stress responding genes

(2014) Ning Liu et al.   NUCLEIC ACIDS RESEARCH

The Boron Efflux Transporter ROTTEN EAR Is Required for Maize Inflorescence Development and Fertility

(2014) Mithu Chatterjee et al.   PLANT CELL

MaizeSBP-boxtranscription factorsunbranched2andunbranched3affect yield traits by regulating the rate of lateral primordia initiation

(2014) George S. Chuck et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The transcriptional regulatory network in the drought response and its crosstalk in abiotic stress responses including drought, cold, and heat

(2014) Kazuo Nakashima et al.   Frontiers in Plant Science

Four distinct types of dehydration stress memory genes in Arabidopsis thaliana

(2013) Yong Ding et al.   BMC PLANT BIOLOGY

A double take on bivalent promoters

(2013) P. Voigt et al.   GENES & DEVELOPMENT

Genome-Wide Analysis of Histone Modifications: H3K4me2, H3K4me3, H3K9ac, and H3K27ac in Oryza sativa L. Japonica

(2013) Zhou Du et al.   Molecular Plant

Jumonji C Domain Protein JMJ705-Mediated Removal of Histone H3 Lysine 27 Trimethylation Is Involved in Defense-Related Gene Activation in Rice

(2013) T. Li et al.   PLANT CELL

The circadian clock-associated genegigantea1affects maize developmental transitions

(2013) CLAIRE BENDIX et al.   PLANT CELL AND ENVIRONMENT

Transcriptome Profile Analysis of Maize Seedlings in Response to High-salinity, Drought and Cold Stresses by Deep Sequencing

(2013) Xiaohui Shan et al.   PLANT MOLECULAR BIOLOGY REPORTER

An Extensive Evaluation of Read Trimming Effects on Illumina NGS Data Analysis

(2013) Cristian Del Fabbro et al.   PLoS One

Flowering time regulation: photoperiod- and temperature-sensing in leaves

(2013) Young Hun Song et al.   TRENDS IN PLANT SCIENCE

Differential analysis of gene regulation at transcript resolution with RNA-seq

(2012) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Transition of Chromatin Status During the Process of Recovery from Drought Stress in Arabidopsis thaliana

(2012) Jong-Myong Kim et al.   PLANT AND CELL PHYSIOLOGY

Cold stress selectively unsilences tandem repeats in heterochromatin associated with accumulation of H3K9ac

(2012) YONG HU et al.   PLANT CELL AND ENVIRONMENT

A Gene Regulatory Network Model for Floral Transition of the Shoot Apex in Maize and Its Dynamic Modeling

(2012) Zhanshan Dong et al.   PLoS One

CHD3 protein recognizes and regulates methylated histone H3 lysines 4 and 27 over a subset of targets in the rice genome

(2012) Y. Hu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Multiple exposures to drought 'train' transcriptional responses in Arabidopsis

(2012) Yong Ding et al.   Nature Communications

Genome-wide identification of gibberellins metabolic enzyme genes and expression profiling analysis during seed germination in maize

(2011) Jian Song et al.   GENE

ZCN8 encodes a potential orthologue of Arabidopsis FT florigen that integrates both endogenous and photoperiod flowering signals in maize

(2011) Chloë M. Lazakis et al.   JOURNAL OF EXPERIMENTAL BOTANY

The FT-Like ZCN8 Gene Functions as a Floral Activator and Is Involved in Photoperiod Sensitivity in Maize

(2011) X. Meng et al.   PLANT CELL

The panorama of physiological responses and gene expression of whole plant of maize inbred line YQ7-96 at the three-leaf stage under water deficit and re-watering

(2011) Hai-Feng Lu et al.   THEORETICAL AND APPLIED GENETICS

Dynamic Regulation of H3K27 Trimethylation during Arabidopsis Differentiation

(2011) Marcel Lafos et al.   PLoS Genetics

Dynamic Changes in Genome-Wide Histone H3 Lysine 4 Methylation Patterns in Response to Dehydration Stress in Arabidopsis thaliana

(2010) Karin van Dijk et al.   BMC PLANT BIOLOGY

The maize SBP-box transcription factor encoded by tasselsheath4 regulates bract development and the establishment of meristem boundaries

(2010) G. Chuck et al.   DEVELOPMENT

Maize DELLA Proteins dwarf plant8 and dwarf plant9 as Modulators of Plant Development

(2010) Shai J. Lawit et al.   PLANT AND CELL PHYSIOLOGY

Global Epigenetic and Transcriptional Trends among Two Rice Subspecies and Their Reciprocal Hybrids

(2010) G. He et al.   PLANT CELL

Epigenetic regulation of stress responses in plants

(2009) Viswanathan Chinnusamy et al.   CURRENT OPINION IN PLANT BIOLOGY

Drought in the Southeastern United States: Causes, Variability over the Last Millennium, and the Potential for Future Hydroclimate Change*

(2009) Richard Seager et al.   JOURNAL OF CLIMATE

Genome-Wide and Organ-Specific Landscapes of Epigenetic Modifications and Their Relationships to mRNA and Small RNA Transcriptomes in Maize

(2009) X. Wang et al.   PLANT CELL

Dynamic Landscapes of Four Histone Modifications during Deetiolation in Arabidopsis

(2009) J.-B. F. Charron et al.   PLANT CELL

A guide to using MapMan to visualize and compare Omics data in plants: a case study in the crop species, Maize

(2009) BJÖRN USADEL et al.   PLANT CELL AND ENVIRONMENT

Histone occupancy-dependent and -independent removal of H3K27 trimethylation at cold-responsive genes in Arabidopsis

(2009) Chang Seob Kwon et al.   PLANT JOURNAL

Genome-wide transcriptome analysis of two maize inbred lines under drought stress

(2009) Jun Zheng et al.   PLANT MOLECULAR BIOLOGY

Genome-wide analysis of mono-, di- and trimethylation of histone H3 lysine 4 in Arabidopsis thaliana

(2009) Xiaoyu Zhang et al.   GENOME BIOLOGY

Photosynthesis under drought and salt stress: regulation mechanisms from whole plant to cell

(2008) M. M. Chaves et al.   ANNALS OF BOTANY

Alterations of Lysine Modifications on the Histone H3 N-Tail under Drought Stress Conditions in Arabidopsis thaliana

(2008) Jong-Myong Kim et al.   PLANT AND CELL PHYSIOLOGY

Involvement of the MADS-Box Gene ZMM4 in Floral Induction and Inflorescence Development in Maize

(2008) O. N. Danilevskaya et al.   PLANT PHYSIOLOGY

A maize CONSTANS-like gene, conz1, exhibits distinct diurnal expression patterns in varied photoperiods

(2008) Theresa A. Miller et al.   PLANTA