Biogeography of microbial communities in high‐latitude ecosystems: Contrasting drivers for methanogens, methanotrophs and global prokaryotes

Climate warming has direct and indirect effects on microbes associated with carbon cycling in northern lakes

(2023) Johanna C. Winder et al.   GLOBAL CHANGE BIOLOGY

Acetoclastic archaea adaptation under increasing temperature in lake sediments and wetland soils from Alaska

(2023) B. M. Dellagnezze et al.   POLAR BIOLOGY

Global increase in methane production under future warming of lake bottom waters

(2022) Joachim Jansen et al.   GLOBAL CHANGE BIOLOGY

Sulfur and methane oxidation by a single microorganism

(2022) Joo-Han Gwak et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Permafrost and Climate Change: Carbon Cycle Feedbacks From the Warming Arctic

(2022) Edward A.G. Schuur et al.   Annual Review of Environment and Resources

Seasonal increase of methane emissions linked to warming in Siberian tundra

(2022) Norman Rößger et al.   Nature Climate Change

The denitrifying anaerobic methane oxidation process and microorganisms in the environments: A review

(2022) Hengchen Wei et al.   Frontiers in Marine Science

A combined microbial and biogeochemical dataset from high-latitude ecosystems with respect to methane cycle

(2022) Maialen Barret et al.   Scientific Data

How microbes in permafrost could trigger a massive carbon bomb

(2021) Monique Brouillette   NATURE

Temperature differently affected methanogenic pathways and microbial communities in sub-Antarctic freshwater ecosystems

(2021) Céline Lavergne et al.   ENVIRONMENT INTERNATIONAL

Metabolic flexibility of aerobic methanotrophs under anoxic conditions in Arctic lake sediments

(2021) Ruo He et al.   ISME Journal

Exploring the Microdiversity Within Marine Bacterial Taxa: Toward an Integrated Biogeography in the Southern Ocean

(2021) Guillaume Schwob et al.   Frontiers in Microbiology

An Integrative Model for Soil Biogeochemistry and Methane Processes: I. Model Structure and Sensitivity Analysis

(2021) Daniel M. Ricciuto et al.   Journal of Geophysical Research-Biogeosciences

Relative Importance of Deterministic and Stochastic Processes on Soil Microbial Community Assembly in Temperate Grasslands

(2021) Nana Liu et al.   Microorganisms

Variability of Microbial Communities in Two Long-Term Ice-Covered Freshwater Lakes in the Subarctic Region of Yakutia, Russia

(2021) Yulia Zakharova et al.   MICROBIAL ECOLOGY

Non-syntrophic methanogenic hydrocarbon degradation by an archaeal species

(2021) Zhuo Zhou et al.   NATURE

Disentangling the effects of methanogen community and environment on peatland greenhouse gas production by a reciprocal transplant experiment

(2020) Heli Juottonen   FUNCTIONAL ECOLOGY

Sub-oxycline methane oxidation can fully uptake CH4 produced in sediments: case study of a lake in Siberia

(2020) Frédéric Thalasso et al.   Scientific Reports

Reduced net methane emissions due to microbial methane oxidation in a warmer Arctic

(2020) Youmi Oh et al.   Nature Climate Change

Several ways one goal—methanogenesis from unconventional substrates

(2020) Julia M. Kurth et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Diversity and function of soil microbes on montane gradients: The state of knowledge in a changing world

(2020) Caitlin I Looby et al.   FEMS MICROBIOLOGY ECOLOGY

Comparative analysis of free-living and particle-associated bacterial communities of Lake Baikal during the ice-covered period

(2020) Maria V. Bashenkhaeva et al.   JOURNAL OF GREAT LAKES RESEARCH

Disproportionate increase in freshwater methane emissions induced by experimental warming

(2020) Yizhu Zhu et al.   Nature Climate Change

Anaerobic oxidation of methane and associated microbiome in anoxic water of Northwestern Siberian lakes

(2020) Léa Cabrol et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Environmental and Microbial Interactions Shape Methane-Oxidizing Bacterial Communities in a Stratified Lake

(2020) Carole Guggenheim et al.   Frontiers in Microbiology

An evolving view of methane metabolism in the Archaea

(2019) Paul N. Evans et al.   NATURE REVIEWS MICROBIOLOGY

Factors influencing aquatic and terrestrial bacterial community assembly

(2019) Silke Langenheder et al.   Environmental Microbiology Reports

Permafrost is warming at a global scale

(2019) Boris K. Biskaborn et al.   Nature Communications

Wide diversity of methane and short-chain alkane metabolisms in uncultured archaea

(2019) Guillaume Borrel et al.   Nature Microbiology

Historical Factors Associated With Past Environments Influence the Biogeography of Thermophilic Endospores in Arctic Marine Sediments

(2019) China A. Hanson et al.   Frontiers in Microbiology

Widespread soil bacterium that oxidizes atmospheric methane

(2019) Alexander T. Tveit et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Distinct methanotrophic communities exist in habitats with different soil water contents

(2019) Liyan Zhang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Responses of Active Ammonia-oxidizers and Nitrification Activity in Eutrophic Lake Sediments to Nitrogen and Temperature

(2019) Ling Wu et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Scientists’ warning to humanity: microorganisms and climate change

(2019) Ricardo Cavicchioli et al.   NATURE REVIEWS MICROBIOLOGY

Large‐scale biogeography and environmental regulation of methanotrophic bacteria across boreal inland waters

(2019) Sophie Crevecoeur et al.   MOLECULAR ECOLOGY

Deforestation for oil palm: impact on microbially mediated methane and nitrous oxide emissions, and soil bacterial communities

(2019) Thomas Kaupper et al.   BIOLOGY AND FERTILITY OF SOILS

Gammaproteobacterial methanotrophs dominate methanotrophy in aerobic and anaerobic layers of boreal lake waters

(2018) AJ Rissanen et al.   AQUATIC MICROBIAL ECOLOGY

Variation in range size and dispersal capabilities of microbial taxa

(2018) Mallory J. Choudoir et al.   ECOLOGY

Why do microbes exhibit weak biogeographic patterns?

(2018) Kyle M. Meyer et al.   ISME Journal

Methylotrophic methanogenesis in Sphagnum -dominated peatland soils

(2018) C.A. Zalman et al.   SOIL BIOLOGY & BIOCHEMISTRY

Environmental drivers of the geographical distribution of methanotrophs: Insights from a national survey

(2018) Loïc Nazaries et al.   SOIL BIOLOGY & BIOCHEMISTRY

Genomic Insights Into the Acid Adaptation of Novel Methanotrophs Enriched From Acidic Forest Soils

(2018) Ngoc-Loi Nguyen et al.   Frontiers in Microbiology

The Extent and Regulation of Summer Methane Oxidation in Northern Lakes

(2018) Shoji D. Thottathil et al.   Journal of Geophysical Research-Biogeosciences

Members of the Genus Methylobacter Are Inferred To Account for the Majority of Aerobic Methane Oxidation in Oxic Soils from a Freshwater Wetland

(2018) Garrett J. Smith et al.   mBio

Tipping point in plant-fungal interactions under severe drought causes abrupt rise in peatland ecosystem respiration

(2017) Vincent E. J. Jassey et al.   GLOBAL CHANGE BIOLOGY

WorldClim 2: new 1-km spatial resolution climate surfaces for global land areas

(2017) Stephen E. Fick et al.   INTERNATIONAL JOURNAL OF CLIMATOLOGY

Metabolic shift at the class level sheds light on adaptation of methanogens to oxidative environments

(2017) Zhe Lyu et al.   ISME Journal

Contrasting the relative importance of species sorting and dispersal limitation in shaping marine bacterial versus protist communities

(2017) Wenxue Wu et al.   ISME Journal

Mixotrophy drives niche expansion of verrucomicrobial methanotrophs

(2017) Carlo R Carere et al.   ISME Journal

In-depth analysis of core methanogenic communities from high elevation permafrost-affected wetlands

(2017) Sizhong Yang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Global Biogeographic Analysis of Methanogenic Archaea Identifies Community-Shaping Environmental Factors of Natural Environments

(2017) Xi Wen et al.   Frontiers in Microbiology

Distribution of Bathyarchaeota Communities Across Different Terrestrial Settings and Their Potential Ecological Functions

(2017) Xing Xiang et al.   Scientific Reports

Alpha- and Gammaproteobacterial Methanotrophs Codominate the Active Methane-Oxidizing Communities in an Acidic Boreal Peat Bog

(2016) Kaitlin C. Esson et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Photoautotrophic microorganisms as a carbon source for temperate soil invertebrates

(2016) Olaf Schmidt et al.   Biology Letters

Genomic evidence for distinct carbon substrate preferences and ecological niches of Bathyarchaeota in estuarine sediments

(2016) Cassandre Sara Lazar et al.   ENVIRONMENTAL MICROBIOLOGY

Distribution of Dehalococcoidia in the Anaerobic Deep Water of a Remote Meromictic Crater Lake and Detection of Dehalococcoidia-Derived Reductive Dehalogenase Homologous Genes

(2016) Corinne Biderre-Petit et al.   PLoS One

Circumpolar distribution and carbon storage of thermokarst landscapes

(2016) D. Olefeldt et al.   Nature Communications

Emissions of methane from northern peatlands: a review of management impacts and implications for future management options

(2016) Mohamed Abdalla et al.   Ecology and Evolution

Distinct Factors Shape Aquatic and Sedimentary Microbial Community Structures in the Lakes of Western China

(2016) Jian Yang et al.   Frontiers in Microbiology

Geographical Distribution of Methanogenic Archaea in Nine Representative Paddy Soils in China

(2016) Qianhui Zu et al.   Frontiers in Microbiology

VSEARCH: a versatile open source tool for metagenomics

(2016) Torbjørn Rognes et al.   PeerJ

Genomic and enzymatic evidence for acetogenesis among multiple lineages of the archaeal phylum Bathyarchaeota widespread in marine sediments

(2016) Y. He et al.   Nature Microbiology

Regional variations in the diversity and predicted metabolic potential of benthic prokaryotes in coastal northern Zhejiang, East China Sea

(2016) Kai Wang et al.   Scientific Reports

Methylocapsa palsarum sp. nov., a methanotroph isolated from a subArctic discontinuous permafrost ecosystem

(2015) Svetlana N. Dedysh et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Genome of Methanoregula boonei 6A8 reveals adaptations to oligotrophic peatland environments

(2015) Suzanna Bräuer et al.   MICROBIOLOGY-SGM

Climate change and the permafrost carbon feedback

(2015) E. A. G. Schuur et al.   NATURE

Metabolic and trophic interactions modulate methane production by Arctic peat microbiota in response to warming

(2015) Alexander Tøsdal Tveit et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Methane metabolism in the archaeal phylum Bathyarchaeota revealed by genome-centric metagenomics

(2015) P. N. Evans et al.   SCIENCE

More evidence that anaerobic oxidation of methane is prevalent in soils: Is it time to upgrade our biogeochemical models?

(2015) Mathieu Gauthier et al.   SOIL BIOLOGY & BIOCHEMISTRY

Multi-scale variability analysis reveals the importance of spatial distance in shaping Arctic soil microbial functional communities

(2015) Yu Shi et al.   SOIL BIOLOGY & BIOCHEMISTRY

Soil methane oxidation and land-use change – from process to mitigation

(2015) Kevin R. Tate   SOIL BIOLOGY & BIOCHEMISTRY

Diversity and Habitat Preferences of Cultivated and Uncultivated Aerobic Methanotrophic Bacteria Evaluated Based on pmoA as Molecular Marker

(2015) Claudia Knief   Frontiers in Microbiology

Snapshot of methanogen sensitivity to temperature in Zoige wetland from Tibetan plateau

(2015) Li Fu et al.   Frontiers in Microbiology

Vegetation-Associated Impacts on Arctic Tundra Bacterial and Microeukaryotic Communities

(2014) Yu Shi et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Illuminating Microbial Dark Matter in Meromictic Sakinaw Lake

(2014) Esther A. Gies et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Expanding the Verrucomicrobial Methanotrophic World: Description of Three Novel Species of Methylacidimicrobium gen. nov.

(2014) Muriel C. F. van Teeseling et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

In Situ Measurement of Dissolved Methane and Carbon Dioxide in Freshwater Ecosystems by Off-Axis Integrated Cavity Output Spectroscopy

(2014) Rodrigo Gonzalez-Valencia et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Peatland succession induces a shift in the community composition ofSphagnum-associated active methanotrophs

(2014) Anuliina Putkinen et al.   FEMS MICROBIOLOGY ECOLOGY

Metabolic interdependencies between phylogenetically novel fermenters and respiratory organisms in an unconfined aquifer

(2014) Kelly C Wrighton et al.   ISME Journal

Response of archaeal communities to water regimes under simulated warming and drought conditions in Tibetan Plateau wetlands

(2014) Jianqing Tian et al.   JOURNAL OF SOILS AND SEDIMENTS

A Meta-Analysis of the Bacterial and Archaeal Diversity Observed in Wetland Soils

(2014) Xiaofei Lv et al.   TheScientificWorldJOURNAL

Swarm: robust and fast clustering method for amplicon-based studies

(2014) Frédéric Mahé et al.   PeerJ

Phylogenomic Data Support a Seventh Order of Methylotrophic Methanogens and Provide Insights into the Evolution of Methanogenesis

(2013) Guillaume Borrel et al.   Genome Biology and Evolution

Bacterial taxa-area and distance-decay relationships in marine environments

(2013) L. Zinger et al.   MOLECULAR ECOLOGY

Environmental impacts on the diversity of methane-cycling microbes and their resultant function

(2013) Emma L. Aronson et al.   Frontiers in Microbiology

Collinearity: a review of methods to deal with it and a simulation study evaluating their performance

(2012) Carsten F. Dormann et al.   ECOGRAPHY

Methylomonas paludis sp. nov., the first acid-tolerant member of the genus Methylomonas, from an acidic wetland

(2012) O. V. Danilova et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Beyond biogeographic patterns: processes shaping the microbial landscape

(2012) China A. Hanson et al.   NATURE REVIEWS MICROBIOLOGY

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

pH controls over anaerobic carbon mineralization, the efficiency of methane production, and methanogenic pathways in peatlands across an ombrotrophic–minerotrophic gradient

(2012) Rongzhong Ye et al.   SOIL BIOLOGY & BIOCHEMISTRY

Competing Formate- and Carbon Dioxide-Utilizing Prokaryotes in an Anoxic Methane-Emitting Fen Soil

(2011) Sindy Hunger et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Methanogen diversity and community composition in peatlands of the central to northern Appalachian Mountain region, North America

(2011) Joseph B. Yavitt et al.   BIOGEOCHEMISTRY

Temperature and soil organic matter decomposition rates - synthesis of current knowledge and a way forward

(2011) Richard T. Conant et al.   GLOBAL CHANGE BIOLOGY

Dispersal ability links to cross-scale species diversity patterns across the Eurasian Arctic tundra

(2011) Jonathan Lenoir et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Distance decay of similarity in freshwater communities: do macro- and microorganisms follow the same rules?

(2011) Anna Astorga et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Bryocella elongata gen. nov., sp. nov., a member of subdivision 1 of the Acidobacteria isolated from a methanotrophic enrichment culture, and emended description of Edaphobacter aggregans Koch et al. 2008

(2011) S. N. Dedysh et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Drivers of bacterial  -diversity depend on spatial scale

(2011) J. B. H. Martiny et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The active methanotrophic community in a wetland from the High Arctic

(2011) Christiane Graef et al.   Environmental Microbiology Reports

Local and regional factors influencing bacterial community assembly

(2011) Eva S. Lindström et al.   Environmental Microbiology Reports

Invisible invaders: non-pathogenic invasive microbes in aquatic and terrestrial ecosystems

(2010) Elena Litchman   ECOLOGY LETTERS

Soil bacterial diversity in the Arctic is not fundamentally different from that found in other biomes

(2010) Haiyan Chu et al.   ENVIRONMENTAL MICROBIOLOGY

Methyloferula stellata gen. nov., sp. nov., an acidophilic, obligately methanotrophic bacterium that possesses only a soluble methane monooxygenase

(2010) A. V. Vorobev et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Soil bacterial and fungal communities across a pH gradient in an arable soil

(2010) Johannes Rousk et al.   ISME Journal

Microorganisms and climate change: terrestrial feedbacks and mitigation options

(2010) Brajesh K. Singh et al.   NATURE REVIEWS MICROBIOLOGY

Acetate utilization as a survival strategy of peat-inhabiting Methylocystis spp.

(2010) Svetlana E. Belova et al.   Environmental Microbiology Reports

Methylovirgula ligni gen. nov., sp. nov., an obligately acidophilic, facultatively methylotrophic bacterium with a highly divergent mxaF gene

(2009) A. V. Vorob'ev et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Electron transfer in syntrophic communities of anaerobic bacteria and archaea

(2009) Alfons J. M. Stams et al.   NATURE REVIEWS MICROBIOLOGY

Conservative Fragments in Bacterial 16S rRNA Genes and Primer Design for 16S Ribosomal DNA Amplicons in Metagenomic Studies

(2009) Yong Wang et al.   PLoS One

Environmental, genomic and taxonomic perspectives on methanotrophicVerrucomicrobia

(2009) Huub J. M. Op den Camp et al.   Environmental Microbiology Reports

The global methane cycle: recent advances in understanding the microbial processes involved

(2009) Ralf Conrad   Environmental Microbiology Reports

Changing lenses to assess biodiversity: patterns of species richness in sub-Antarctic plants and implications for global conservation

(2008) Ricardo Rozzi et al.   FRONTIERS IN ECOLOGY AND THE ENVIRONMENT

Fates of methane from different lake habitats: Connecting whole-lake budgets and CH4emissions

(2008) David Bastviken et al.   JOURNAL OF GEOPHYSICAL RESEARCH

Two isozymes of particulate methane monooxygenase with different methane oxidation kinetics are found in Methylocystis sp. strain SC2

(2008) M. Baani et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA