Metabolic shift at the class level sheds light on adaptation of methanogens to oxidative environments

A Ferredoxin- and F 420 H 2 -Dependent, Electron-Bifurcating, Heterodisulfide Reductase with Homologs in the Domains Bacteria and Archaea

(2017) Zhen Yan et al.   mBio

Discovery of extremely halophilic, methyl-reducing euryarchaea provides insights into the evolutionary origin of methanogenesis

(2017) Dimitry Y. Sorokin et al.   Nature Microbiology

Chasing the elusive Euryarchaeota class WSA2: genomes reveal a uniquely fastidious methyl-reducing methanogen

(2016) Masaru Konishi Nobu et al.   ISME Journal

A Novel F420-dependent Thioredoxin Reductase Gated by Low Potential FAD

(2016) Dwi Susanti et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Advances in Time Estimation Methods for Molecular Data

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Methylotrophic methanogenesis discovered in the archaeal phylum Verstraetearchaeota

(2016) Inka Vanwonterghem et al.   Nature Microbiology

Rerouting Cellular Electron Flux To Increase the Rate of Biological Methane Production

(2015) Jennie L. Catlett et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Extending the Conserved Phylogenetic Core of Archaea Disentangles the Evolution of the Third Domain of Life

(2015) Céline Petitjean et al.   MOLECULAR BIOLOGY AND EVOLUTION

The two-domain tree of life is linked to a new root for the Archaea

(2015) Kasie Raymann et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Methane metabolism in the archaeal phylum Bathyarchaeota revealed by genome-centric metagenomics

(2015) P. N. Evans et al.   SCIENCE

Comparative genomics of threeMethanocellalesstrains reveal novel taxonomic and metabolic features

(2015) Zhe Lyu et al.   Environmental Microbiology Reports

The universal tree of life: an update

(2015) Patrick Forterre   Frontiers in Microbiology

Molecular characterization of the thioredoxin system fromMethanosarcina acetivorans

(2014) Addison C. McCarver et al.   FEBS Journal

The contribution of the Precambrian continental lithosphere to global H2 production

(2014) Barbara Sherwood Lollar et al.   NATURE

Thioredoxin targets fundamental processes in a methane-producing archaeon, Methanocaldococcus jannaschii

(2014) D. Susanti et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The thioredoxin antioxidant system

(2013) Jun Lu et al.   FREE RADICAL BIOLOGY AND MEDICINE

Phylogenomic Data Support a Seventh Order of Methylotrophic Methanogens and Provide Insights into the Evolution of Methanogenesis

(2013) Guillaume Borrel et al.   Genome Biology and Evolution

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

The molecular mechanisms and physiological consequences of oxidative stress: lessons from a model bacterium

(2013) James A. Imlay   NATURE REVIEWS MICROBIOLOGY

Hydrogen-Nitrogen Greenhouse Warming in Earth's Early Atmosphere

(2013) R. Wordsworth et al.   SCIENCE

Energy conservation via electron bifurcating ferredoxin reduction and proton/Na+ translocating ferredoxin oxidation

(2012) Wolfgang Buckel et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

Electron transport during aceticlastic methanogenesis byMethanosarcina acetivoransinvolves a sodium-translocating Rnf complex

(2012) Katharina Schlegel et al.   FEBS Journal

Methanomassiliicoccus luminyensis gen. nov., sp. nov., a methanogenic archaeon isolated from human faeces

(2012) B. Dridi et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Phylogenomics of Prokaryotic Ribosomal Proteins

(2012) Natalya Yutin et al.   PLoS One

Estimating divergence times in large molecular phylogenies

(2012) K. Tamura et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phylogeny and evolution of the Archaea: one hundred genomes later

(2011) Celine Brochier-Armanet et al.   CURRENT OPINION IN MICROBIOLOGY

Hydrogen, metals, bifurcating electrons, and proton gradients: The early evolution of biological energy conservation

(2011) William F. Martin   FEBS LETTERS

Methanogenic archaea are globally ubiquitous in aerated soils and become active under wet anoxic conditions

(2011) Roey Angel et al.   ISME Journal

Biased gene transfer in microbial evolution

(2011) Cheryl P. Andam et al.   NATURE REVIEWS MICROBIOLOGY

Activation of Methanogenesis in Arid Biological Soil Crusts Despite the Presence of Oxygen

(2011) Roey Angel et al.   PLoS One

Coupling of ferredoxin and heterodisulfide reduction via electron bifurcation in hydrogenotrophic methanogenic archaea

(2011) A.-K. Kaster et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transcriptional response of methanogenmcrAgenes to oxygen exposure of rice field soil

(2011) Yanli Yuan et al.   Environmental Microbiology Reports

Hydrogenases from Methanogenic Archaea, Nickel, a Novel Cofactor, and H2Storage

(2010) Rudolf K. Thauer et al.   Annual Review of Biochemistry

Regulation of microbial methane production and oxidation by intermittent drainage in rice field soil

(2010) Ke Ma et al.   FEMS MICROBIOLOGY ECOLOGY

Cysteine Is Not the Sulfur Source for Iron-Sulfur Cluster and Methionine Biosynthesis in the Methanogenic ArchaeonMethanococcus maripaludis

(2010) Yuchen Liu et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The Genome Sequence ofMethanohalophilus mahiiSLPTReveals Differences in the Energy Metabolism among Members of theMethanosarcinaceaeInhabiting Freshwater and Saline Environments

(2010) Stefan Spring et al.   ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL

DOG 1.0: illustrator of protein domain structures

(2009) Jian Ren et al.   CELL RESEARCH

Towards the definition of a core of microorganisms involved in anaerobic digestion of sludge

(2009) Delphine Rivière et al.   ISME Journal

Oceanic nickel depletion and a methanogen famine before the Great Oxidation Event

(2009) Kurt O. Konhauser et al.   NATURE

Genomic Characterization of Methanomicrobiales Reveals Three Classes of Methanogens

(2009) Iain Anderson et al.   PLoS One

Hydrogen is a preferred intermediate in the energy-conserving electron transport chain of Methanosarcina barkeri

(2009) G. Kulkarni et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

EnvDB, a database for describing the environmental distribution of prokaryotic taxa

(2009) Miguel Pignatelli et al.   Environmental Microbiology Reports

Metabolic, Phylogenetic, and Ecological Diversity of the Methanogenic Archaea

(2008) Yuchen Liu et al.   Annals of the New York Academy of Sciences

Cellular Defenses against Superoxide and Hydrogen Peroxide

(2008) James A. Imlay   Annual Review of Biochemistry

PerR acts as a switch for oxygen tolerance in the strict anaerobe Clostridium acetobutylicum

(2008) Falk Hillmann et al.   MOLECULAR MICROBIOLOGY

Parallel adaptations to high temperatures in the Archaean eon

(2008) Bastien Boussau et al.   NATURE

Methanogenic archaea: ecologically relevant differences in energy conservation

(2008) Rudolf K. Thauer et al.   NATURE REVIEWS MICROBIOLOGY

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

(2008) J. R. Cole et al.   NUCLEIC ACIDS RESEARCH

A Rapid Bootstrap Algorithm for the RAxML Web Servers

(2008) Alexandros Stamatakis et al.   SYSTEMATIC BIOLOGY