Genomic and enzymatic evidence for acetogenesis among multiple lineages of the archaeal phylum Bathyarchaeota widespread in marine sediments

The archaeal lipidome in estuarine sediment dominated by members of the Miscellaneous Crenarchaeotal Group

(2015) Travis B. Meador et al.   ENVIRONMENTAL MICROBIOLOGY

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

(2015) Donovan H. Parks et al.   GENOME RESEARCH

Methane metabolism in the archaeal phylum Bathyarchaeota revealed by genome-centric metagenomics

(2015) P. N. Evans et al.   SCIENCE

Crenarchaeal heterotrophy in salt marsh sediments

(2014) Lauren M Seyler et al.   ISME Journal

Evidence for a Hexaheteromeric Methylenetetrahydrofolate Reductase in Moorella thermoacetica

(2014) J. Mock et al.   JOURNAL OF BACTERIOLOGY

Methanogenic burst in the end-Permian carbon cycle

(2014) D. H. Rothman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Global rates of marine sulfate reduction and implications for sub-sea-floor metabolic activities

(2014) M. W. Bowles et al.   SCIENCE

Energy at life's origin

(2014) W. F. Martin et al.   SCIENCE

Meta-Analysis of Quantification Methods Shows that Archaea and Bacteria Have Similar Abundances in the Subseafloor

(2013) Karen G. Lloyd et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Acetate formation in the photoheterotrophic bacteriumChloroflexus aurantiacusinvolves an archaeal type ADP-forming acetyl-CoA synthetase isoenzyme I

(2013) Marcel Schmidt et al.   FEMS MICROBIOLOGY LETTERS

Genetic and functional properties of uncultivated MCG archaea assessed by metagenome and gene expression analyses

(2013) Jun Meng et al.   ISME Journal

Insights into the phylogeny and coding potential of microbial dark matter

(2013) Christian Rinke et al.   NATURE

Gene expression in the deep biosphere

(2013) William D. Orsi et al.   NATURE

Predominant archaea in marine sediments degrade detrital proteins

(2013) Karen G. Lloyd et al.   NATURE

Microbial life under extreme energy limitation

(2013) Tori M. Hoehler et al.   NATURE REVIEWS MICROBIOLOGY

MEROPS: the database of proteolytic enzymes, their substrates and inhibitors

(2013) Neil D. Rawlings et al.   NUCLEIC ACIDS RESEARCH

IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth

(2012) Y. Peng et al.   BIOINFORMATICS

The genome sequence of Propionibacterium acidipropionici provides insights into its biotechnological and industrial potential

(2012) Lucas P Parizzi et al.   BMC GENOMICS

Bacterial and archaeal diversities in Yunnan and Tibetan hot springs, China

(2012) Zhao-Qi Song et al.   ENVIRONMENTAL MICROBIOLOGY

Archaea of the Miscellaneous Crenarchaeotal Group are abundant, diverse and widespread in marine sediments

(2012) Kyoko Kubo et al.   ISME Journal

Global distribution of microbial abundance and biomass in subseafloor sediment

(2012) J. Kallmeyer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Correlating microbial community profiles with geochemical data in highly stratified sediments from the Arctic Mid-Ocean Ridge

(2012) S. L. Jorgensen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Fermentation, Hydrogen, and Sulfur Metabolism in Multiple Uncultivated Bacterial Phyla

(2012) K. C. Wrighton et al.   SCIENCE

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

Acetogenesis in Deep Subseafloor Sediments of The Juan de Fuca Ridge Flank: A Synthesis of Geochemical, Thermodynamic, and Gene-based Evidence

(2010) Mark A. Lever et al.   GEOMICROBIOLOGY JOURNAL

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

The stable carbon isotope biogeochemistry of acetate and other dissolved carbon species in deep subseafloor sediments at the northern Cascadia Margin

(2009) Verena B. Heuer et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Community-wide analysis of microbial genome sequence signatures

(2009) Gregory J Dick et al.   GENOME BIOLOGY

Old Acetogens, New Light

(2008) Harold L. Drake et al.   Annals of the New York Academy of Sciences

Enzymology of the Wood-Ljungdahl Pathway of Acetogenesis

(2008) Stephen W. Ragsdale   Annals of the New York Academy of Sciences

Prokaryotic biodiversity and activity in the deep subseafloor biosphere

(2008) John C. Fry et al.   FEMS MICROBIOLOGY ECOLOGY

Numbers, biomass and cultivable diversity of microbial populations relate to depth and borehole-specific conditions in groundwater from depths of 4–450 m in Olkiluoto, Finland

(2008) Karsten Pedersen et al.   ISME Journal

Significant contribution of Archaea to extant biomass in marine subsurface sediments

(2008) Julius S. Lipp et al.   NATURE

The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics

(2008) B. L. Cantarel et al.   NUCLEIC ACIDS RESEARCH

Metagenomic signatures of the Peru Margin subseafloor biosphere show a genetically distinct environment

(2008) J. F. Biddle et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA