Regional variations in the diversity and predicted metabolic potential of benthic prokaryotes in coastal northern Zhejiang, East China Sea

Functional Responses of Salt Marsh Microbial Communities to Long-Term Nutrient Enrichment

(2016) Christopher J. Graves et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Bacterial diversity in oil-polluted marine coastal sediments

(2016) Alejandro Acosta-González et al.   CURRENT OPINION IN BIOTECHNOLOGY

D ehalococcoides has a dehalogenation complex

(2016) Stephen H. Zinder   ENVIRONMENTAL MICROBIOLOGY

Diversity analysis of sulfite- and sulfate-reducing microorganisms by multiplex dsrA and dsrB amplicon sequencing using new primers and mock community-optimized bioinformatics

(2016) Claus Pelikan et al.   ENVIRONMENTAL MICROBIOLOGY

Long-distance electron transfer by cable bacteria in aquifer sediments

(2016) Hubert Müller et al.   ISME Journal

Characterization of the stromatolite microbiome from Little Darby Island, The Bahamas using predictive and whole shotgun metagenomic analysis

(2015) Giorgio Casaburi et al.   ENVIRONMENTAL MICROBIOLOGY

Changes in microbial communities in coastal sediments along natural CO2gradients at a volcanic vent in Papua New Guinea

(2015) Felix F. Raulf et al.   ENVIRONMENTAL MICROBIOLOGY

Decoupled distance-decay patterns between dsrA and 16S rRNA genes among salt marsh sulfate-reducing bacteria

(2015) Angus Angermeyer et al.   ENVIRONMENTAL MICROBIOLOGY

Bacterial biogeography in the coastal waters of northern Zhejiang, East China Sea is highly controlled by spatially structured environmental gradients

(2015) Kai Wang et al.   ENVIRONMENTAL MICROBIOLOGY

Origin, dynamics, and implications of extracellular DNA pools in marine sediments

(2015) Andrea Torti et al.   Marine Genomics

The putative functional ecology and distribution of archaeal communities in sponges, sediment and seawater in a coral reef environment

(2015) Ana R. M. Polónia et al.   MOLECULAR ECOLOGY

Microbial community assembly and metabolic function during mammalian corpse decomposition

(2015) J. L. Metcalf et al.   SCIENCE

Patterns of benthic bacterial diversity in coastal areas contaminated by heavy metals, polycyclic aromatic hydrocarbons (PAHs) and polychlorinated biphenyls (PCBs)

(2015) Grazia Marina Quero et al.   Frontiers in Microbiology

Bacterial population and biodegradation potential in chronically crude oil-contaminated marine sediments are strongly linked to temperature

(2015) Rafael Bargiela et al.   Scientific Reports

Biogeography of the Sediment Bacterial Community Responds to a Nitrogen Pollution Gradient in the East China Sea

(2014) Jinbo Xiong et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The “bacterial heterodisulfide” DsrC is a key protein in dissimilatory sulfur metabolism

(2014) S.S. Venceslau et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Indications for algae-degrading benthic microbial communities in deep-sea sediments along the Antarctic Polar Front

(2014) S. Emil Ruff et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

Temperature response of denitrification and anaerobic ammonium oxidation rates and microbial community structure in Arctic fjord sediments

(2014) Andy Canion et al.   ENVIRONMENTAL MICROBIOLOGY

Natural occurrence of microbial sulphur oxidation by long-range electron transport in the seafloor

(2014) Sairah Y Malkin et al.   ISME Journal

Metagenomics reveals sediment microbial community response to Deepwater Horizon oil spill

(2014) Olivia U Mason et al.   ISME Journal

Metagenomic analysis of organic matter degradation in methane-rich Arctic Ocean sediments

(2014) David L. Kirchman et al.   LIMNOLOGY AND OCEANOGRAPHY

Bacterial and Archaeal Communities in Sediments of the North Chinese Marginal Seas

(2014) Jiwen Liu et al.   MICROBIAL ECOLOGY

Shallow Water Marine Sediment Bacterial Community Shifts Along a Natural CO2 Gradient in the Mediterranean Sea Off Vulcano, Italy

(2014) Dorsaf Kerfahi et al.   MICROBIAL ECOLOGY

Core sediment bacteria drive community response to anthropogenic contamination over multiple environmental gradients

(2013) Melanie Y. Sun et al.   ENVIRONMENTAL MICROBIOLOGY

Rapid Degradation of Deepwater Horizon Spilled Oil by Indigenous Microbial Communities in Louisiana Saltmarsh Sediments

(2013) Nagissa Mahmoudi et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Ecology of marine Bacteroidetes: a comparative genomics approach

(2013) Beatriz Fernández-Gómez et al.   ISME Journal

Bacterial taxa-area and distance-decay relationships in marine environments

(2013) L. Zinger et al.   MOLECULAR ECOLOGY

Predominant archaea in marine sediments degrade detrital proteins

(2013) Karen G. Lloyd et al.   NATURE

The changing carbon cycle of the coastal ocean

(2013) James E. Bauer et al.   NATURE

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

(2013) Morgan G I Langille et al.   NATURE BIOTECHNOLOGY

Hotspots of anaerobic ammonium oxidation at land–freshwater interfaces

(2013) Guibing Zhu et al.   Nature Geoscience

Nitrification expanded: discovery, physiology and genomics of a nitrite-oxidizing bacterium from the phylum Chloroflexi

(2012) Dimitry Y Sorokin et al.   ISME Journal

Ocean currents shape the microbiome of Arctic marine sediments

(2012) Leila J Hamdan et al.   ISME Journal

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

Geochemistry of organic carbon and nitrogen in surface sediments of coastal Bohai Bay inferred from their ratios and stable isotopic signatures

(2012) Xuelu Gao et al.   MARINE POLLUTION BULLETIN

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Influence of Deglaciation on Microbial Communities in Marine Sediments Off the Coast of Svalbard, Arctic Circle

(2011) Soo-Je Park et al.   MICROBIAL ECOLOGY

Biosolubilization of phosphorus from rock phosphate by moderately thermophilic and mesophilic bacteria

(2011) Chun Qiao Xiao et al.   MINERALS ENGINEERING

Drivers of bacterial  -diversity depend on spatial scale

(2011) J. B. H. Martiny et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A comparison of different methods for determining the organic and inorganic carbon content of lake sediment from two lakes on the Tibetan Plateau

(2011) Junbo Wang et al.   QUATERNARY INTERNATIONAL

Metabolic Flexibility of Sulfate-Reducing Bacteria

(2011) Caroline M. Plugge et al.   Frontiers in Microbiology

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

Biochemical and microbial features of shallow marine sediments along the Terra Nova Bay (Ross Sea, Antarctica)

(2010) Franco Baldi et al.   CONTINENTAL SHELF RESEARCH

Electric currents couple spatially separated biogeochemical processes in marine sediment

(2010) Lars Peter Nielsen et al.   NATURE

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Distinct gene set in two different lineages of ammonia-oxidizing archaea supports the phylum Thaumarchaeota

(2010) Anja Spang et al.   TRENDS IN MICROBIOLOGY

Sediment microbial enzyme activity as an indicator of nutrient limitation in the great rivers of the Upper Mississippi River basin

(2009) Brian H. Hill et al.   BIOGEOCHEMISTRY

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Time- and sediment depth-related variations in bacterial diversity and community structure in subtidal sands

(2009) Simone I Böer et al.   ISME Journal

Changes in Community Structure of Sediment Bacteria Along the Florida Coastal Everglades Marsh–Mangrove–Seagrass Salinity Gradient

(2009) Makoto Ikenaga et al.   MICROBIAL ECOLOGY

Microarray-Based Characterization of Microbial Community Functional Structure and Heterogeneity in Marine Sediments from the Gulf of Mexico

(2008) L. Wu et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Resistance, resilience, and redundancy in microbial communities

(2008) S. D. Allison et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA