Large‐scale biogeography and environmental regulation of methanotrophic bacteria across boreal inland waters

Contrasting Winter Versus Summer Microbial Communities and Metabolic Functions in a Permafrost Thaw Lake

(2019) Adrien Vigneron et al.   Frontiers in Microbiology

Gammaproteobacterial methanotrophs dominate methanotrophy in aerobic and anaerobic layers of boreal lake waters

(2018) AJ Rissanen et al.   AQUATIC MICROBIAL ECOLOGY

Methane Feedbacks to the Global Climate System in a Warmer World

(2018) Joshua F. Dean et al.   REVIEWS OF GEOPHYSICS

The Extent and Regulation of Summer Methane Oxidation in Northern Lakes

(2018) Shoji D. Thottathil et al.   Journal of Geophysical Research-Biogeosciences

Identifying the core seed bank of a complex boreal bacterial metacommunity

(2017) Clara Ruiz-González et al.   ISME Journal

Activity of Type I Methanotrophs Dominates under High Methane Concentration: Methanotrophic Activity in Slurry Surface Crusts as Influenced by Methane, Oxygen, and Inorganic Nitrogen

(2017) Yun-Feng Duan et al.   JOURNAL OF ENVIRONMENTAL QUALITY

Anaerobic oxidation of methane by aerobic methanotrophs in sub-Arctic lake sediments

(2017) Karla Martinez-Cruz et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Seasonal Variation in Abundance and Diversity of Bacterial Methanotrophs in Five Temperate Lakes

(2017) Md Sainur Samad et al.   Frontiers in Microbiology

Diversity and potential activity of methanotrophs in high methane-emitting permafrost thaw ponds

(2017) Sophie Crevecoeur et al.   PLoS One

Effects of experimental nitrogen fertilization on planktonic metabolism and CO2 flux in a hypereutrophic hardwater lake

(2017) Matthew J. Bogard et al.   PLoS One

Millions of Boreal Shield Lakes can be used to Probe Archaean Ocean Biogeochemistry

(2017) S. L. Schiff et al.   Scientific Reports

Alpha- and Gammaproteobacterial Methanotrophs Codominate the Active Methane-Oxidizing Communities in an Acidic Boreal Peat Bog

(2016) Kaitlin C. Esson et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The ecology of methane in streams and rivers: patterns, controls, and global significance

(2016) Emily H. Stanley et al.   ECOLOGICAL MONOGRAPHS

Landscape-scale spatial abundance distributions discriminate core from random components of boreal lake bacterioplankton

(2016) Juan Pablo Niño-García et al.   ECOLOGY LETTERS

Interactions between hydrology and water chemistry shape bacterioplankton biogeography across boreal freshwater networks

(2016) Juan Pablo Niño-García et al.   ISME Journal

Methane oxidation at the water-ice interface of an ice-covered lake

(2016) Monica Ricão Canelhas et al.   LIMNOLOGY AND OCEANOGRAPHY

pH Influences the Importance of Niche-Related and Neutral Processes in Lacustrine Bacterioplankton Assembly

(2015) Lijuan Ren et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Major contribution of both zooplankton and protists to the top-down regulation of freshwater aerobic anoxygenic phototrophic bacteria

(2015) MC Garcia-Chaves et al.   AQUATIC MICROBIAL ECOLOGY

Terrestrial origin of bacterial communities in complex boreal freshwater networks

(2015) Clara Ruiz-González et al.   ECOLOGY LETTERS

The quality of organic matter shapes the functional biogeography of bacterioplankton across boreal freshwater ecosystems

(2015) Clara Ruiz-González et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Diversity and Habitat Preferences of Cultivated and Uncultivated Aerobic Methanotrophic Bacteria Evaluated Based on pmoA as Molecular Marker

(2015) Claudia Knief   Frontiers in Microbiology

Bacterial community structure across environmental gradients in permafrost thaw ponds: methanotroph-rich ecosystems

(2015) Sophie Crevecoeur et al.   Frontiers in Microbiology

Resuscitation of the rare biosphere contributes to pulses of ecosystem activity

(2015) Zachary T. Aanderud et al.   Frontiers in Microbiology

Light-Dependent Aerobic Methane Oxidation Reduces Methane Emissions from Seasonally Stratified Lakes

(2015) Kirsten Oswald et al.   PLoS One

N2-fixation by methanotrophs sustains carbon and nitrogen accumulation in pristine peatlands

(2014) Melanie A. Vile et al.   BIOGEOCHEMISTRY

Regional contribution of CO2and CH4fluxes from the fluvial network in a lowland boreal landscape of Québec

(2014) Audrey Campeau et al.   GLOBAL BIOGEOCHEMICAL CYCLES

Large-scale patterns in summer diffusive CH4fluxes across boreal lakes, and contribution to diffusive C emissions

(2014) Terhi Rasilo et al.   GLOBAL CHANGE BIOLOGY

Methylocaldum marinum sp. nov., a thermotolerant, methane-oxidizing bacterium isolated from marine sediments, and emended description of the genus Methylocaldum

(2014) M. Takeuchi et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Widespread methanotrophic primary production in lowland chalk rivers

(2014) F. Shelley et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Methane on the Rise--Again

(2014) E. G. Nisbet et al.   SCIENCE

Effects of ammonium on the activity and community of methanotrophs in landfill biocover soils

(2014) Xuan Zhang et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Metacommunity dynamics of bacteria in an arctic lake: the impact of species sorting and mass effects on bacterial production and biogeography

(2014) Heather E. Adams et al.   Frontiers in Microbiology

Ecology of aerobic methanotrophs in controlling methane fluxes from wetlands

(2013) Taniya Roy Chowdhury et al.   APPLIED SOIL ECOLOGY

Microbial minorities modulate methane consumption through niche partitioning

(2013) Paul LE Bodelier et al.   ISME Journal

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Headwaters are critical reservoirs of microbial diversity for fluvial networks

(2013) K. Besemer et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Shifts in Identity and Activity of Methanotrophs in Arctic Lake Sediments in Response to Temperature Changes

(2012) Ruo He et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Methane-cycling communities in a permafrost-affected soil on Herschel Island, Western Canadian Arctic: active layer profiling ofmcrAandpmoAgenes

(2012) Béatrice A. Barbier et al.   FEMS MICROBIOLOGY ECOLOGY

One millimetre makes the difference: high-resolution analysis of methane-oxidizing bacteria and their specific activity at the oxic–anoxic interface in a flooded paddy soil

(2012) Andreas Reim et al.   ISME Journal

Microbial diversity in arctic freshwaters is structured by inoculation of microbes from soils

(2012) Byron C Crump et al.   ISME Journal

GenBank

(2012) Dennis A. Benson et al.   NUCLEIC ACIDS RESEARCH

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

(2012) Anna Klindworth et al.   NUCLEIC ACIDS RESEARCH

Methane source strength and energy flow shape methanotrophic communities in oxygen-methane counter-gradients

(2012) Sascha Krause et al.   Environmental Microbiology Reports

The Rare Bacterial Biosphere

(2011) Carlos Pedrós-Alió   Annual Review of Marine Science

Detection, Isolation, and Characterization of Acidophilic Methanotrophs from Sphagnum Mosses

(2011) Nardy Kip et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

DNA-, rRNA- and mRNA-based stable isotope probing of aerobic methanotrophs in lake sediment

(2011) Marc G. Dumont et al.   ENVIRONMENTAL MICROBIOLOGY

Species sorting and neutral processes are both important during the initial assembly of bacterial communities

(2011) Silke Langenheder et al.   ISME Journal

Production and consumption of methane in freshwater lake ecosystems

(2011) Guillaume Borrel et al.   RESEARCH IN MICROBIOLOGY

Freshwater Methane Emissions Offset the Continental Carbon Sink

(2011) D. Bastviken et al.   SCIENCE

The active methanotrophic community in a wetland from the High Arctic

(2011) Christiane Graef et al.   Environmental Microbiology Reports

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Hydrology is reflected in the functioning and community composition of methanotrophs in the littoral wetland of a boreal lake

(2010) Henri M.P. Siljanen et al.   FEMS MICROBIOLOGY ECOLOGY

Methyloferula stellata gen. nov., sp. nov., an acidophilic, obligately methanotrophic bacterium that possesses only a soluble methane monooxygenase

(2010) A. V. Vorobev et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Enrichment and Molecular Detection of Denitrifying Methanotrophic Bacteria of the NC10 Phylum

(2009) K. F. Ettwig et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Biogeography of wetland rice methanotrophs

(2009) Claudia Lüke et al.   ENVIRONMENTAL MICROBIOLOGY

Biphasic kinetics of  a methanotrophic community is a combination of growth and increased activity per cell

(2009) Anne K. Steenbergh et al.   FEMS MICROBIOLOGY ECOLOGY

The quest for atmospheric methane oxidizers in forest soils

(2009) Steffen Kolb   Environmental Microbiology Reports

Abundance and Activity of Methanotrophic Bacteria in Littoral and Profundal Sediments of Lake Constance (Germany)

(2008) M. Rahalkar et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Revealing the uncultivated majority: combining DNA stable-isotope probing, multiple displacement amplification and metagenomic analyses of uncultivated Methylocystis in acidic peatlands

(2008) Yin Chen et al.   ENVIRONMENTAL MICROBIOLOGY

Diversity of the active methanotrophic community in acidic peatlands as assessed by mRNA and SIP-PLFA analyses

(2008) Yin Chen et al.   ENVIRONMENTAL MICROBIOLOGY

Applying stable isotope probing of phospholipid fatty acids and rRNA in a Chinese rice field to study activity and composition of the methanotrophic bacterial communities in situ

(2008) Qiongfen Qiu et al.   ISME Journal

Abundance and community composition of methanotrophs in a Chinese paddy soil under long-term fertilization practices

(2008) Yong Zheng et al.   JOURNAL OF SOILS AND SEDIMENTS