Swarm: robust and fast clustering method for amplicon-based studies
Published 2014 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Swarm: robust and fast clustering method for amplicon-based studies
Authors
Keywords
-
Journal
PeerJ
Volume 2, Issue -, Pages e593
Publisher
PeerJ
Online
2014-09-25
DOI
10.7717/peerj.593
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Patterns of Rare and Abundant Marine Microbial Eukaryotes
- (2014) Ramiro Logares et al. CURRENT BIOLOGY
- Placing Environmental Next-Generation Sequencing Amplicons from Microbial Eukaryotes into a Phylogenetic Context
- (2014) Micah Dunthorn et al. MOLECULAR BIOLOGY AND EVOLUTION
- Surprisingly extensive mixed phylogenetic and ecological signals among bacterial Operational Taxonomic Units
- (2013) Alexander F. Koeppel et al. NUCLEIC ACIDS RESEARCH
- CD-HIT: accelerated for clustering the next-generation sequencing data
- (2012) Limin Fu et al. BIOINFORMATICS
- PANDAseq: paired-end assembler for illumina sequences
- (2012) Andre P Masella et al. BMC BIOINFORMATICS
- Diversity patterns of uncultured Haptophytes unravelled by pyrosequencing in Naples Bay
- (2012) Lucie Bittner et al. MOLECULAR ECOLOGY
- DNACLUST: accurate and efficient clustering of phylogenetic marker genes
- (2011) Mohammadreza Ghodsi et al. BMC BIOINFORMATICS
- Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation
- (2011) Torbjørn Rognes BMC BIOINFORMATICS
- A Holistic Approach to Marine Eco-Systems Biology
- (2011) Eric Karsenti et al. PLOS BIOLOGY
- Search and clustering orders of magnitude faster than BLAST
- (2010) Robert C. Edgar BIOINFORMATICS
- Ironing out the wrinkles in the rare biosphere through improved OTU clustering
- (2010) Susan M. Huse et al. ENVIRONMENTAL MICROBIOLOGY
- QIIME allows analysis of high-throughput community sequencing data
- (2010) J Gregory Caporaso et al. NATURE METHODS
- Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample
- (2010) J. G. Caporaso et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Delimiting operational taxonomic units for assessing ciliate environmental diversity using small-subunit rRNA gene sequences
- (2010) Markus Nebel et al. Environmental Microbiology Reports
- Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
- (2009) P. D. Schloss et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreFind the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
Search