Global Biogeographic Analysis of Methanogenic Archaea Identifies Community-Shaping Environmental Factors of Natural Environments

In-depth analysis of core methanogenic communities from high elevation permafrost-affected wetlands

(2017) Sizhong Yang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Chasing the elusive Euryarchaeota class WSA2: genomes reveal a uniquely fastidious methyl-reducing methanogen

(2016) Masaru Konishi Nobu et al.   ISME Journal

Global biogeography of microbial nitrogen-cycling traits in soil

(2016) Michaeline B. Nelson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ecosystem Level Methane Fluxes from Tidal Freshwater and Brackish Marshes of the Mississippi River Delta: Implications for Coastal Wetland Carbon Projects

(2016) Guerry O. Holm et al.   WETLANDS

The biogeography of red snow microbiomes and their role in melting arctic glaciers

(2016) Stefanie Lutz et al.   Nature Communications

Habitat heterogeneity and connectivity shape microbial communities in South American peatlands

(2016) Felix Oloo et al.   Scientific Reports

Salinity shapes microbial diversity and community structure in surface sediments of the Qinghai-Tibetan Lakes

(2016) Jian Yang et al.   Scientific Reports

Methylotrophic methanogenesis discovered in the archaeal phylum Verstraetearchaeota

(2016) Inka Vanwonterghem et al.   Nature Microbiology

Methanogenic archaea database containing physiological and biochemical characteristics

(2015) Sławomir Jabłoński et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Global dispersion and local diversification of the methane seep microbiome

(2015) S. Emil Ruff et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Methane metabolism in the archaeal phylum Bathyarchaeota revealed by genome-centric metagenomics

(2015) P. N. Evans et al.   SCIENCE

Warmer temperature accelerates methane emissions from the Zoige wetland on the Tibetan Plateau without changing methanogenic community composition

(2015) Mengmeng Cui et al.   Scientific Reports

Shifts in methanogenic community composition and methane fluxes along the degradation of discontinuous permafrost

(2015) Susanne Liebner et al.   Frontiers in Microbiology

Diversity and Habitat Preferences of Cultivated and Uncultivated Aerobic Methanotrophic Bacteria Evaluated Based on pmoA as Molecular Marker

(2015) Claudia Knief   Frontiers in Microbiology

Biodiversity and Ecosystem Functioning

(2014) David Tilman et al.   Annual Review of Ecology Evolution and Systematics

Taxonomic database and cut-off value for processing mcrA gene 454 pyrosequencing data by MOTHUR

(2014) Sizhong Yang et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Methane dynamics regulated by microbial community response to permafrost thaw

(2014) Carmody K. McCalley et al.   NATURE

Distance-Decay and Taxa-Area Relationships for Bacteria, Archaea and Methanogenic Archaea in a Tropical Lake Sediment

(2014) Davi Pedroni Barreto et al.   PLoS One

Methane, microbes and models: fundamental understanding of the soil methane cycle for future predictions

(2013) Loïc Nazaries et al.   ENVIRONMENTAL MICROBIOLOGY

Phylogenomic Data Support a Seventh Order of Methylotrophic Methanogens and Provide Insights into the Evolution of Methanogenesis

(2013) Guillaume Borrel et al.   Genome Biology and Evolution

Three decades of global methane sources and sinks

(2013) Stefanie Kirschke et al.   Nature Geoscience

Global Ecological Pattern of Ammonia-Oxidizing Archaea

(2013) Huiluo Cao et al.   PLoS One

FunGene: the functional gene pipeline and repository

(2013) Jordan A. Fish et al.   Frontiers in Microbiology

Methane emissions from wetlands: biogeochemical, microbial, and modeling perspectives from local to global scales

(2012) Scott D. Bridgham et al.   GLOBAL CHANGE BIOLOGY

Biogeography of bacterial communities exposed to progressive long-term environmental change

(2012) Ramiro Logares et al.   ISME Journal

Microbial diversity in arctic freshwaters is structured by inoculation of microbes from soils

(2012) Byron C Crump et al.   ISME Journal

Beyond biogeographic patterns: processes shaping the microbial landscape

(2012) China A. Hanson et al.   NATURE REVIEWS MICROBIOLOGY

pH controls over anaerobic carbon mineralization, the efficiency of methane production, and methanogenic pathways in peatlands across an ombrotrophic–minerotrophic gradient

(2012) Rongzhong Ye et al.   SOIL BIOLOGY & BIOCHEMISTRY

Competing Formate- and Carbon Dioxide-Utilizing Prokaryotes in an Anoxic Methane-Emitting Fen Soil

(2011) Sindy Hunger et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Species sorting and neutral processes are both important during the initial assembly of bacterial communities

(2011) Silke Langenheder et al.   ISME Journal

Global Patterns of Bacterial Beta-Diversity in Seafloor and Seawater Ecosystems

(2011) Lucie Zinger et al.   PLoS One

Drivers of bacterial  -diversity depend on spatial scale

(2011) J. B. H. Martiny et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Nutrients in estuaries — An overview and the potential impacts of climate change

(2011) Peter J. Statham   SCIENCE OF THE TOTAL ENVIRONMENT

Salinity Influence on Methane Emissions from Tidal Marshes

(2011) Hanna J. Poffenbarger et al.   WETLANDS

Global patterns in the biogeography of bacterial taxa

(2010) Diana R. Nemergut et al.   ENVIRONMENTAL MICROBIOLOGY

A global network of coexisting microbes from environmental and whole-genome sequence data

(2010) S. Chaffron et al.   GENOME RESEARCH

Spatial structure and persistence of methanogen populations in humic bog lakes

(2010) Kim Milferstedt et al.   ISME Journal

Regional distributions of nitrogen-fixing bacteria in the Pacific Ocean

(2010) Matthew J. Church et al.   LIMNOLOGY AND OCEANOGRAPHY

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Isotopic Composition of Methane and Inferred Methanogenic Substrates Along a Salinity Gradient in a Hypersaline Microbial Mat System

(2009) Elyn G. Potter et al.   ASTROBIOLOGY

Species assortment or habitat filtering: a case study of spider communities on lake islands

(2009) Werner Ulrich et al.   ECOLOGICAL RESEARCH

Bacterial diversity and biogeography in deep-sea surface sediments of the South Atlantic Ocean

(2009) Regina Schauer et al.   ISME Journal

Global ecological patterns in uncultured Archaea

(2009) Jean-Christophe Auguet et al.   ISME Journal

Relative abundance and diversity of ammonia-oxidizing archaea and bacteria in the San Francisco Bay estuary

(2008) Annika C. Mosier et al.   ENVIRONMENTAL MICROBIOLOGY

Phylogenetic and functional gene analysis of the bacterial and archaeal communities associated with the surface microlayer of an estuary

(2008) Michael Cunliffe et al.   ISME Journal

Methanogenic archaea: ecologically relevant differences in energy conservation

(2008) Rudolf K. Thauer et al.   NATURE REVIEWS MICROBIOLOGY