Distribution of Dehalococcoidia in the Anaerobic Deep Water of a Remote Meromictic Crater Lake and Detection of Dehalococcoidia-Derived Reductive Dehalogenase Homologous Genes

Vertical Distribution of Functional Potential and Active Microbial Communities in Meromictic Lake Kivu

(2015) Özgul İnceoğlu et al.   MICROBIAL ECOLOGY

Illuminating Microbial Dark Matter in Meromictic Sakinaw Lake

(2014) Esther A. Gies et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Iron isotopes in an Archean ocean analogue

(2014) Vincent Busigny et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Single cell genomic study of Dehalococcoidetes species from deep-sea sediments of the Peruvian Margin

(2014) Anne-Kristin Kaster et al.   ISME Journal

High frequency of phylogenetically diverse reductive dehalogenase-homologous genes in deep subseafloor sedimentary metagenomes

(2014) Mikihiko Kawai et al.   Frontiers in Microbiology

Novel Firmicutes Group Implicated in the Dechlorination of Two Chlorinated Xanthones, Analogues of Natural Organochlorines

(2013) Mark J. Krzmarzick et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Gene Capture Coupled to High-Throughput Sequencing as a Strategy for Targeted Metagenome Exploration

(2013) J. Denonfoux et al.   DNA RESEARCH

Biomineralization of iron-phosphates in the water column of Lake Pavin (Massif Central, France)

(2013) Julie Cosmidis et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Genome sequencing of a single cell of the widely distributed marine subsurface Dehalococcoidia, phylum Chloroflexi

(2013) Kenneth Wasmund et al.   ISME Journal

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Overview of organohalide-respiring bacteria and a proposal for a classification system for reductive dehalogenases

(2013) L. A. Hug et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Phylogenetically Distinct Bacteria Involve Extensive Dechlorination of Aroclor 1260 in Sediment-Free Cultures

(2013) Shanquan Wang et al.   PLoS One

Phylogenetic Affiliation of SSU rRNA Genes Generated by Massively Parallel Sequencing: New Insights into the Freshwater Protist Diversity

(2013) Najwa Taib et al.   PLoS One

Community genomic analyses constrain the distribution of metabolic traits across the Chloroflexi phylum and indicate roles in sediment carbon cycling

(2013) Laura A Hug et al.   Microbiome

Discovery of atrans-Dichloroethene-Respiring Dehalogenimonas Species in the 1,1,2,2-Tetrachloroethane-Dechlorinating WBC-2 Consortium

(2012) Marie J. Manchester et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Abundance and diversity of organohalide-respiring bacteria in lake sediments across a geographical sulfur gradient

(2012) Mark J. Krzmarzick et al.   FEMS MICROBIOLOGY ECOLOGY

Vertical distribution of microbial communities in a perennially stratified Arctic lake with saline, anoxic bottom waters

(2012) André M. Comeau et al.   Scientific Reports

Complete genome sequence of Dehalogenimonas lykanthroporepellens type strain (BL-DC-9T) and comparison to “Dehalococcoides” strains

(2012) Shivakumara Siddaramappa et al.   Standards in Genomic Sciences

Dehalogenimonas spp. can Reductively Dehalogenate High Concentrations of 1,2-Dichloroethane, 1,2-Dichloropropane, and 1,1,2-Trichloroethane

(2012) Andrew D Maness et al.   AMB Express

In situTCE degradation mediated by complex dehalorespiring communities during biostimulation processes

(2012) Eric Dugat-Bony et al.   Microbial Biotechnology

Natural Niche for Organohalide-Respiring Chloroflexi

(2011) Mark J. Krzmarzick et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Biogeochemical modelling of anaerobic vs. aerobic methane oxidation in a meromictic crater lake (Lake Pavin, France)

(2011) F. Lopes et al.   APPLIED GEOCHEMISTRY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Identification of microbial communities involved in the methane cycle of a freshwater meromictic lake

(2011) Corinne Biderre-Petit et al.   FEMS MICROBIOLOGY ECOLOGY

Bacterial communities in sediments of the shallow Lake Dongping in China

(2011) H. Song et al.   JOURNAL OF APPLIED MICROBIOLOGY

Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy

(2011) I. Letunic et al.   NUCLEIC ACIDS RESEARCH

PANGEA: pipeline for analysis of next generation amplicons

(2010) Adriana Giongo et al.   ISME Journal

Identification of Sulfur-Cycle Prokaryotes in a Low-Sulfate Lake (Lake Pavin) Using aprA and 16S rRNA Gene Markers

(2010) Corinne Biderre-Petit et al.   MICROBIAL ECOLOGY

Transcription Analysis of Genes Encoding Homologues of Reductive Dehalogenases in "Dehalococcoides" sp. Strain CBDB1 by Using Terminal Restriction Fragment Length Polymorphism and Quantitative PCR

(2009) A. Wagner et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Dehalogenation Activities and Distribution of Reductive Dehalogenase Homologous Genes in Marine Subsurface Sediments

(2009) T. Futagami et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Dominance of a clonal green sulfur bacterial population in a stratified lake

(2009) Lea H. Gregersen et al.   FEMS MICROBIOLOGY ECOLOGY

Solution hybrid selection with ultra-long oligonucleotides for massively parallel targeted sequencing

(2009) Andreas Gnirke et al.   NATURE BIOTECHNOLOGY

Degradation of 1,2-dichloroethane by microbial communities from river sediment at various redox conditions

(2009) Bas van der Zaan et al.   WATER RESEARCH

Localized Plasticity in the Streamlined Genomes of Vinyl Chloride Respiring Dehalococcoides

(2009) Paul J. McMurdie et al.   PLoS Genetics

A Case Study for Microbial Biodegradation: Anaerobic Bacterial Reductive Dechlorination of Polychlorinated Biphenyls—From Sediment to Defined Medium

(2008) Donna L. Bedard   Annual Review of Microbiology

Dehalorespiration with Polychlorinated Biphenyls by an Anaerobic Ultramicrobacterium

(2008) H. D. May et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Hydrological budget, carbon sources and biogeochemical processes in Lac Pavin (France): Constraints from δ18O of water and δ13C of dissolved inorganic carbon

(2008) N. Assayag et al.   APPLIED GEOCHEMISTRY

The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes

(2008) F Meyer et al.   BMC BIOINFORMATICS

Biodiversity of Dehalorespiring Bacteria with Special Emphasis on Polychlorinated Biphenyl/Dioxin Dechlorinators

(2008) Akira Hiraishi   MICROBES AND ENVIRONMENTS