Members of the Genus Methylobacter Are Inferred To Account for the Majority of Aerobic Methane Oxidation in Oxic Soils from a Freshwater Wetland

Determining total emissions and environmental drivers of methane flux in a Lake Erie estuarine marsh

(2018) A.C. Rey-Sanchez et al.   ECOLOGICAL ENGINEERING

A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life

(2018) Donovan H Parks et al.   NATURE BIOTECHNOLOGY

High-resolution sequencing reveals unexplored archaeal diversity in freshwater wetland soils

(2017) Adrienne B. Narrowe et al.   ENVIRONMENTAL MICROBIOLOGY

Abundant carbon substrates drive extremely high sulfate reduction rates and methane fluxes in Prairie Pothole Wetlands

(2017) Paula Dalcin Martins et al.   GLOBAL CHANGE BIOLOGY

Crenothrix are major methane consumers in stratified lakes

(2017) Kirsten Oswald et al.   ISME Journal

Mixotrophy drives niche expansion of verrucomicrobial methanotrophs

(2017) Carlo R Carere et al.   ISME Journal

Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea

(2017) Robert M Bowers et al.   NATURE BIOTECHNOLOGY

Microbial oxidation as a methane sink beneath the West Antarctic Ice Sheet

(2017) Alexander B. Michaud et al.   Nature Geoscience

Methanogenesis in oxygenated soils is a substantial fraction of wetland methane emissions

(2017) Jordan C. Angle et al.   Nature Communications

Seasonal Variation in Abundance and Diversity of Bacterial Methanotrophs in Five Temperate Lakes

(2017) Md Sainur Samad et al.   Frontiers in Microbiology

Oxygen-limited metabolism in the methanotroph Methylomicrobium buryatense 5GB1C

(2017) Alexey Gilman et al.   PeerJ

Attribution of changes in global wetland methane emissions from pre-industrial to present using CLM4.5-BGC

(2016) Rajendra Paudel et al.   Environmental Research Letters

Methylacidiphilum fumariolicum SolV, a thermoacidophilic ‘Knallgas’ methanotroph with both an oxygen-sensitive and -insensitive hydrogenase

(2016) Sepehr Mohammadi et al.   ISME Journal

New roles in hemicellulosic sugar fermentation for the uncultivated Bacteroidetes family BS11

(2016) Lindsey M Solden et al.   ISME Journal

The Na+-Translocating NADH:Quinone Oxidoreductase Enhances Oxidative Stress in the Cytoplasm of Vibrio cholerae

(2016) Valentin Muras et al.   JOURNAL OF BACTERIOLOGY

XoxF Acts as the Predominant Methanol Dehydrogenase in the Type I Methanotroph Methylomicrobium buryatense

(2016) Frances Chu et al.   JOURNAL OF BACTERIOLOGY

Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

(2016) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Lanthanide-dependent cross-feeding of methane-derived carbon is linked by microbial community interactions

(2016) Sascha M. B. Krause et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A new view of the tree of life

(2016) Laura A. Hug et al.   Nature Microbiology

Methylotrophs in natural habitats: current insights through metagenomics

(2015) Ludmila Chistoserdova   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Methane oxidation coupled to nitrate reduction under hypoxia by the GammaproteobacteriumMethylomonas denitrificans, sp. nov. type strain FJG1

(2015) K. Dimitri Kits et al.   ENVIRONMENTAL MICROBIOLOGY

XoxFencoding an alternative methanol dehydrogenase is widespread in coastal marine environments

(2015) Martin Taubert et al.   ENVIRONMENTAL MICROBIOLOGY

Metabolic and trophic interactions modulate methane production by Arctic peat microbiota in response to warming

(2015) Alexander Tøsdal Tveit et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Patterns in Wetland Microbial Community Composition and Functional Gene Repertoire Associated with Methane Emissions

(2015) Shaomei He et al.   mBio

Diversity and Habitat Preferences of Cultivated and Uncultivated Aerobic Methanotrophic Bacteria Evaluated Based on pmoA as Molecular Marker

(2015) Claudia Knief   Frontiers in Microbiology

Diverse electron sources support denitrification under hypoxia in the obligate methanotroph Methylomicrobium album strain BG8

(2015) K. Dimitri Kits et al.   Frontiers in Microbiology

Genomic Reconstruction of an Uncultured Hydrothermal Vent Gammaproteobacterial Methanotroph (Family Methylothermaceae) Indicates Multiple Adaptations to Oxygen Limitation

(2015) Connor T. Skennerton et al.   Frontiers in Microbiology

Metatranscriptomic Analysis of Arctic Peat Soil Microbiota

(2014) Alexander T. Tveit et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

PQQ-dependent methanol dehydrogenases: rare-earth elements make a difference

(2014) Jan T. Keltjens et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Culturable psychrotolerant methanotrophic bacteria in landfill cover soil

(2014) A. Yu. Kallistova et al.   MICROBIOLOGY

Methanotrophic bacteria in cold seeps of the floodplains of northern rivers

(2014) S. E. Belova et al.   MICROBIOLOGY

SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information

(2014) Marco Biasini et al.   NUCLEIC ACIDS RESEARCH

The Expanded Diversity of Methylophilaceae from Lake Washington through Cultivation and Genomic Sequencing of Novel Ecotypes

(2014) David A. C. Beck et al.   PLoS One

Discovery of a novel methanogen prevalent in thawing permafrost

(2014) Rhiannon Mondav et al.   Nature Communications

Environmental drivers of methane fluxes from an urban temperate wetland park

(2014) T. H. Morin et al.   Journal of Geophysical Research-Biogeosciences

Rare earth metals are essential for methanotrophic life in volcanic mudpots

(2013) Arjan Pol et al.   ENVIRONMENTAL MICROBIOLOGY

Insights into Denitrification in Methylotenera mobilis from Denitrification Pathway and Methanol Metabolism Mutants

(2013) I. Mustakhimov et al.   JOURNAL OF BACTERIOLOGY

Insights into the phylogeny and coding potential of microbial dark matter

(2013) Christian Rinke et al.   NATURE

Three decades of global methane sources and sinks

(2013) Stefanie Kirschke et al.   Nature Geoscience

The SILVA and “All-species Living Tree Project (LTP)” taxonomic frameworks

(2013) Pelin Yilmaz et al.   NUCLEIC ACIDS RESEARCH

Using stable isotope probing to obtain a targeted metatranscriptome of aerobic methanotrophs in lake sediment

(2013) Marc G. Dumont et al.   Environmental Microbiology Reports

Extraordinary phylogenetic diversity and metabolic versatility in aquifer sediment

(2013) Cindy J. Castelle et al.   Nature Communications

Highly efficient methane biocatalysis revealed in a methanotrophic bacterium

(2013) M. G. Kalyuzhnaya et al.   Nature Communications

A Bacterial Hemerythrin Domain Regulates the Activity of a Vibrio cholerae Diguanylate Cyclase

(2012) Ruth A. Schaller et al.   BIOCHEMISTRY

Phylogenomic analysis of bacterial and archaeal sequences with AMPHORA2

(2012) Martin Wu et al.   BIOINFORMATICS

IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth

(2012) Y. Peng et al.   BIOINFORMATICS

Methane emissions from wetlands: biogeochemical, microbial, and modeling perspectives from local to global scales

(2012) Scott D. Bridgham et al.   GLOBAL CHANGE BIOLOGY

Organic carbon transformations in high-Arctic peat soils: key functions and microorganisms

(2012) Alexander Tveit et al.   ISME Journal

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

Bacteriohemerythrin bolsters the activity of the particulate methane monooxygenase (pMMO) in Methylococcus capsulatus (Bath)

(2012) Kelvin H.-C. Chen et al.   JOURNAL OF INORGANIC BIOCHEMISTRY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Fermentation, Hydrogen, and Sulfur Metabolism in Multiple Uncultivated Bacterial Phyla

(2012) K. C. Wrighton et al.   SCIENCE

The thermodynamic ladder in geomicrobiology

(2011) C. M. Bethke et al.   AMERICAN JOURNAL OF SCIENCE

Methylotrophy in a Lake: from Metagenomics to Single-Organism Physiology

(2011) Ludmila Chistoserdova   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Nitrifying and denitrifying pathways of methanotrophic bacteria

(2011) Lisa Y. Stein et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

The cytochrome bd respiratory oxygen reductases

(2011) Vitaliy B. Borisov et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Genome Sequence of the Arctic Methanotroph Methylobacter tundripaludum SV96

(2011) Mette M. Svenning et al.   JOURNAL OF BACTERIOLOGY

IMG: the integrated microbial genomes database and comparative analysis system

(2011) V. M. Markowitz et al.   NUCLEIC ACIDS RESEARCH

Activation of Methanogenesis in Arid Biological Soil Crusts Despite the Presence of Oxygen

(2011) Roey Angel et al.   PLoS One

The active methanotrophic community in a wetland from the High Arctic

(2011) Christiane Graef et al.   Environmental Microbiology Reports

EMIRGE: reconstruction of full-length ribosomal genes from microbial community short read sequencing data

(2011) Christopher S Miller et al.   GENOME BIOLOGY

Stable Isotope Probing Analysis of the Diversity and Activity of Methanotrophic Bacteria in Soils from the Canadian High Arctic

(2010) C. Martineau et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree

(2010) Frederick A Matsen et al.   BMC BIOINFORMATICS

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

A novel family of functional operons encoding methane/ammonia monooxygenase-related proteins in gammaproteobacterial methanotrophs

(2010) Patricia L. Tavormina et al.   Environmental Microbiology Reports

Methane emission from natural wetlands: interplay between emergent macrophytes and soil microbial processes. A mini-review

(2009) Hendrikus J. Laanbroek   ANNALS OF BOTANY

The Expanding World of Methylotrophic Metabolism

(2009) Ludmila Chistoserdova et al.   Annual Review of Microbiology

Community-wide analysis of microbial genome sequence signatures

(2009) Gregory J Dick et al.   GENOME BIOLOGY

Methylotrophy in Freshwater Beggiatoa alba Strains

(2008) T. Jewell et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A phylogenomic profile of hemerythrins, the nonheme diiron binding respiratory proteins

(2008) Xavier Bailly et al.   BMC EVOLUTIONARY BIOLOGY

The small genome of an abundant coastal ocean methylotroph

(2008) Stephen J. Giovannoni et al.   ENVIRONMENTAL MICROBIOLOGY

Isolation, purification and characterization of hemerythrin from Methylococcus capsulatus (Bath)

(2008) Wei-Chun Kao et al.   JOURNAL OF INORGANIC BIOCHEMISTRY

Diversity of Aerobic Methanotrophic Bacteria in a Permafrost Active Layer Soil of the Lena Delta, Siberia

(2008) Susanne Liebner et al.   MICROBIAL ECOLOGY