Sources and Assembly of Microbial Communities in Vineyards as a Functional Component of Winegrowing

Separate and combined Hanseniaspora uvarum and Metschnikowia pulcherrima metabolic volatiles are attractive to Drosophila suzukii in the laboratory and field

(2021) R. Jones et al.   Scientific Reports

The rhizosphere microbiome plays a role in the resistance to soil-borne pathogens and nutrient uptake of strawberry cultivars under field conditions

(2021) Cristina Lazcano et al.   Scientific Reports

Terroir and vintage discrimination of Malbec wines based on phenolic composition across multiple sites in Mendoza, Argentina

(2021) Roy Urvieta et al.   Scientific Reports

Fungal and bacterial communities of ‘Pinot noir’ must: effects of vintage, growing region, climate, and basic must chemistry

(2021) Kerri L. Steenwerth et al.   PeerJ

A small effect of conservation agriculture on soil biodiversity that differs between biological kingdoms and geographic locations

(2021) Paulina Giraldo-Perez et al.   iScience

Soil Inoculation Alters Leaf Metabolic Profiles in Genetically Identical Plants

(2020) Martine Huberty et al.   JOURNAL OF CHEMICAL ECOLOGY

Microorganisms Move a Short Distance into an Almond Orchard From an Adjacent Upwind Poultry Operation

(2020) Christopher G. Theofel et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Phylogenetic farming: Can evolutionary history predict crop rotation via the soil microbiome?

(2020) Ian Kaplan et al.   Evolutionary Applications

Patterns of Genetic Diversity and the Invasion of Commercial Starters in Saccharomyces cerevisiae Vineyard Populations of Santorini Island

(2020) Ioanna Chalvantzi et al.   Foods

The Use of Macro, Micro, and Trace Elemental Profiles to Differentiate Commercial Single Vineyard Pinot noir Wines at a Sub-Regional Level

(2020) Courtney K. Tanabe et al.   MOLECULES

Plant–microbiome interactions: from community assembly to plant health

(2020) Pankaj Trivedi et al.   NATURE REVIEWS MICROBIOLOGY

Microbiome definition re-visited: old concepts and new challenges

(2020) Gabriele Berg et al.   Microbiome

Characterization of Sub-Regional Variation in Saccharomyces Populations and Grape Phenolic Composition in Pinot Noir Vineyards of a Canadian Wine Region

(2020) Elaine Cheng et al.   Frontiers in Genetics

The Fungal Microbiome Is an Important Component of Vineyard Ecosystems and Correlates with Regional Distinctiveness of Wine

(2020) Di Liu et al.   mSphere

Bark and Grape Microbiome of Vitis vinifera: Influence of Geographic Patterns and Agronomic Management on Bacterial Diversity

(2019) Nicola Vitulo et al.   Frontiers in Microbiology

Root Exudation of Primary Metabolites: Mechanisms and Their Roles in Plant Responses to Environmental Stimuli

(2019) Alberto Canarini et al.   Frontiers in Plant Science

Grapevine Red Blotch Virus May Reduce Carbon Translocation Leading to Impaired Grape Berry Ripening

(2019) Johann Martínez-Lüscher et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

The Fungal and Bacterial Rhizosphere Microbiome Associated With Grapevine Rootstock Genotypes in Mature and Young Vineyards

(2019) Carmen Berlanas et al.   Frontiers in Microbiology

Characterizing the Intra-Vineyard Variation of Soil Bacterial and Fungal Communities

(2019) Hebin Liang et al.   Frontiers in Microbiology

Assembly and seasonality of core phyllosphere microbiota on perennial biofuel crops

(2019) Keara L. Grady et al.   Nature Communications

Small scale fungal community differentiation in a vineyard system

(2019) Sarah J. Knight et al.   FOOD MICROBIOLOGY

Advanced Monitoring and Control of Redox Potential in Wine Fermentation

(2018) David J. Killeen et al.   AMERICAN JOURNAL OF ENOLOGY AND VITICULTURE

Disease-induced assemblage of a plant-beneficial bacterial consortium

(2018) Roeland L. Berendsen et al.   ISME Journal

The ecology of the Drosophila-yeast mutualism in wineries

(2018) Allison S. Quan et al.   PLoS One

Assembly and ecological function of the root microbiome across angiosperm plant species

(2018) Connor R. Fitzpatrick et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The ecology of insect–yeast relationships and its relevance to human industry

(2018) Anne A. Madden et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Nectar yeasts: a natural microcosm for ecology

(2018) Callie R. Chappell et al.   YEAST

Vineyard under-vine floor management alters soil microbial composition, while the fruit microbiome shows no corresponding shifts

(2018) Ming-Yi Chou et al.   Scientific Reports

Grapevine rootstocks shape underground bacterial microbiome and networking but not potential functionality

(2018) Ramona Marasco et al.   Microbiome

The Populus holobiont: dissecting the effects of plant niches and genotype on the microbiome

(2018) M. A. Cregger et al.   Microbiome

Function and functional redundancy in microbial systems

(2018) Stilianos Louca et al.   Nature Ecology & Evolution

Nutrient- and Dose-Dependent Microbiome-Mediated Protection against a Plant Pathogen

(2018) Maureen Berg et al.   CURRENT BIOLOGY

The Rootstock Regulates Microbiome Diversity in Root and Rhizosphere Compartments of Vitis vinifera Cultivar Lambrusco

(2018) Federica D’Amico et al.   Frontiers in Microbiology

Root exudates drive the soil-borne legacy of aboveground pathogen infection

(2018) Jun Yuan et al.   Microbiome

Identification and Frequencies of Endophytic Microbes within Healthy Grape Berries

(2018) Megan E. Hall et al.   AMERICAN JOURNAL OF ENOLOGY AND VITICULTURE

Profiling grapevine trunk pathogens in planta: a case for community-targeted DNA metabarcoding

(2018) Abraham Morales-Cruz et al.   BMC MICROBIOLOGY

Effects of agricultural management on phyllosphere fungal diversity in vineyards and the association with adjacent native forests

(2018) Luis E. Castañeda et al.   PeerJ

A 30-years vineyard trial: Plant communities, soil microbial communities and litter decomposition respond more to soil treatment than to N fertilization

(2018) Martin Pingel et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

Shared and host-specific microbiome diversity and functioning of grapevine and accompanying weed plants

(2017) Abdul Samad et al.   ENVIRONMENTAL MICROBIOLOGY

From vineyard to winery: a source map of microbial diversity driving wine fermentation

(2017) Peter Morrison-Whittle et al.   ENVIRONMENTAL MICROBIOLOGY

Cell wall polysaccharides released during the alcoholic fermentation by Schizosaccharomyces pombe and S. japonicus : quantification and characterization

(2017) P. Domizio et al.   FOOD MICROBIOLOGY

Dispersal alters bacterial diversity and composition in a natural community

(2017) Michaeline B N Albright et al.   ISME Journal

Assessing Spatial Variability of Grape Skin Flavonoids at the Vineyard Scale Based on Plant Water Status Mapping

(2017) Luca Brillante et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

1,8-Cineole in French Red Wines: Evidence for a Contribution Related to Its Various Origins

(2017) Xavier Poitou et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Red blotch disease alters grape berry development and metabolism by interfering with the transcriptional and hormonal regulation of ripening

(2017) Barbara Blanco-Ulate et al.   JOURNAL OF EXPERIMENTAL BOTANY

Microbial Contribution to Wine Aroma and Its Intended Use for Wine Quality Improvement

(2017) Ignacio Belda et al.   MOLECULES

Embracing the unknown: disentangling the complexities of the soil microbiome

(2017) Noah Fierer   NATURE REVIEWS MICROBIOLOGY

Priority effects can persist across floral generations in nectar microbial metacommunities

(2017) Hirokazu Toju et al.   OIKOS

Molecular analysis of the early interaction between the grapevine flower and Botrytis cinerea reveals that prompt activation of specific host pathways leads to fungus quiescence

(2017) Zeraye Mehari Haile et al.   PLANT CELL AND ENVIRONMENT

Is microbial terroir related to geographic distance between vineyards?

(2017) Toshiko Miura et al.   Environmental Microbiology Reports

The Geographic Distribution of Saccharomyces cerevisiae Isolates within three Italian Neighboring Winemaking Regions Reveals Strong Differences in Yeast Abundance, Genetic Diversity and Industrial Strain Dissemination

(2017) Alessia Viel et al.   Frontiers in Microbiology

A Phloem-Feeding Insect Transfers Bacterial Endophytic Communities between Grapevine Plants

(2017) Sebastiàn Lòpez-Fernàndez et al.   Frontiers in Microbiology

The emerging contribution of social wasps to grape rot disease ecology

(2017) Anne A. Madden et al.   PeerJ

Metagenomic analysis exploring taxonomic and functional diversity of soil microbial communities in Chilean vineyards and surrounding native forests

(2017) Luis E. Castañeda et al.   PeerJ

Impact of Yeasts Present during Prefermentation Cold Maceration of Pinot noir Grapes on Wine Volatile Aromas

(2016) Harper Hall et al.   AMERICAN JOURNAL OF ENOLOGY AND VITICULTURE

Bacterial diversity of Grenache and Carignan grape surface from different vineyards at Priorat wine region (Catalonia, Spain)

(2016) Maria del Carmen Portillo et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Enhancement of drought stress tolerance in crops by plant growth promoting rhizobacteria

(2016) Sai Shiva Krishna Prasad Vurukonda et al.   MICROBIOLOGICAL RESEARCH

Dimensions of biodiversity in the Earth mycobiome

(2016) Kabir G. Peay et al.   NATURE REVIEWS MICROBIOLOGY

The Ebb and Flow of Airborne Pathogens: Monitoring and Use in Disease Management Decisions

(2016) Walter F. Mahaffee et al.   PHYTOPATHOLOGY

Root-associated bacteria promote grapevine growth: from the laboratory to the field

(2016) Eleonora Rolli et al.   PLANT AND SOIL

Vineyard soil bacterial diversity and composition revealed by 16S rRNA genes: Differentiation by vineyard management

(2016) Kayla N. Burns et al.   SOIL BIOLOGY & BIOCHEMISTRY

Associations among Wine Grape Microbiome, Metabolome, and Fermentation Behavior Suggest Microbial Contribution to Regional Wine Characteristics

(2016) Nicholas A. Bokulich et al.   mBio

Host genotype and age shape the leaf and root microbiomes of a wild perennial plant

(2016) Maggie R. Wagner et al.   Nature Communications

Direct evidence for microbial-derived soil organic matter formation and its ecophysiological controls

(2016) Cynthia M. Kallenbach et al.   Nature Communications

Microbial Hub Taxa Link Host and Abiotic Factors to Plant Microbiome Variation

(2016) Matthew T. Agler et al.   PLOS BIOLOGY

Changes in the Relative Abundance of Two Saccharomyces Species from Oak Forests to Wine Fermentations

(2016) Sofia Dashko et al.   Frontiers in Microbiology

Overwintering of Vineyard Yeasts: Survival of Interacting Yeast Communities in Grapes Mummified on Vines

(2016) Matthias Sipiczki   Frontiers in Microbiology

Microbial Terroir in Chilean Valleys: Diversity of Non-conventional Yeast

(2016) Carla Jara et al.   Frontiers in Microbiology

Roostocks/Scion/Nitrogen Interactions Affect Secondary Metabolism in the Grape Berry

(2016) Aude Habran et al.   Frontiers in Plant Science

Foliar fungal communities strongly differ between habitat patches in a landscape mosaic

(2016) Thomas Fort et al.   PeerJ

Arbuscular mycorrhiza symbiosis in viticulture: a review

(2015) Sophie Trouvelot et al.   Agronomy for Sustainable Development

Highways in the Sky: Scales of Atmospheric Transport of Plant Pathogens

(2015) David G. Schmale et al.   Annual Review of Phytopathology

Cap removal by honey bees leads to higher pollen rewards from grapevine flowers

(2015) Katja Hogendoorn et al.   APIDOLOGIE

Towards a scientific interpretation of the terroir concept: plasticity of the grape berry metabolome

(2015) Andrea Anesi et al.   BMC PLANT BIOLOGY

Microbiota and Host Nutrition across Plant and Animal Kingdoms

(2015) Stéphane Hacquard et al.   Cell Host & Microbe

Stability and succession of the rhizosphere microbiota depends upon plant type and soil composition

(2015) Andrzej Tkacz et al.   ISME Journal

Quantifying the relative roles of selective and neutral processes in defining eukaryotic microbial communities

(2015) Peter Morrison-Whittle et al.   ISME Journal

Seasonal Community Succession of the Phyllosphere Microbiome

(2015) Julia K. Copeland et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Plant compartment and biogeography affect microbiome composition in cultivated and native Agave species

(2015) Devin Coleman-Derr et al.   NEW PHYTOLOGIST

Developmental and metabolic plasticity of white-skinned grape berries in response to Botrytis cinerea during noble rot

(2015) Barbara Blanco-Ulate et al.   PLANT PHYSIOLOGY

Beneficial Bacteria Isolated from Grapevine Inner Tissues Shape Arabidopsis thaliana Roots

(2015) Enrico Baldan et al.   PLoS One

Impedance of the Grape Berry Cuticle as a Novel Phenotypic Trait to Estimate Resistance to Botrytis Cinerea

(2015) Katja Herzog et al.   SENSORS

Vineyard soil bacterial diversity and composition revealed by 16S rRNA genes: Differentiation by geographic features

(2015) Kayla N. Burns et al.   SOIL BIOLOGY & BIOCHEMISTRY

The Soil Microbiome Influences Grapevine-Associated Microbiota

(2015) Iratxe Zarraonaindia et al.   mBio

Regional microbial signatures positively correlate with differential wine phenotypes: evidence for a microbial aspect to terroir

(2015) Sarah Knight et al.   Scientific Reports

Functional Basis of Microorganism Classification

(2015) Chengsheng Zhu et al.   PLoS Computational Biology

Effect of vegetative canopy architecture on vertical transport of massless particles

(2014) Brian N. Bailey et al.   ATMOSPHERIC ENVIRONMENT

Within-vineyard variation in the ‘pepper’ compound rotundone is spatially structured and related to variation in the land underlying the vineyard

(2014) N.J. Scarlett et al.   AUSTRALIAN JOURNAL OF GRAPE AND WINE RESEARCH

Niche construction initiates the evolution of mutualistic interactions

(2014) Claudia C. Buser et al.   ECOLOGY LETTERS

Natural soil microbes alter flowering phenology and the intensity of selection on flowering time in a wild Arabidopsis relative

(2014) Maggie R. Wagner et al.   ECOLOGY LETTERS

Improved plant resistance to drought is promoted by the root-associated microbiome as a water stress-dependent trait

(2014) Eleonora Rolli et al.   ENVIRONMENTAL MICROBIOLOGY

Use of non-Saccharomyces wine yeasts as novel sources of mannoproteins in wine

(2014) P. Domizio et al.   FOOD MICROBIOLOGY

Influence of the farming system on the epiphytic yeasts and yeast-like fungi colonizing grape berries during the ripening process

(2014) Guilherme Martins et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Quantifying separation and similarity in a Saccharomyces cerevisiae metapopulation

(2014) Sarah Knight et al.   ISME Journal

Unravelling the Diversity of Grapevine Microbiome

(2014) Cátia Pinto et al.   PLoS One

Soil Bacterial Community Response to Differences in Agricultural Management along with Seasonal Changes in a Mediterranean Region

(2014) Annamaria Bevivino et al.   PLoS One

Endemism and functional convergence across the North American soil mycobiome

(2014) J. M. Talbot et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ecological Succession and Stochastic Variation in the Assembly of Arabidopsis thaliana Phyllosphere Communities

(2014) L. Maignien et al.   mBio

A Synthetic Community Approach Reveals Plant Genotypes Affecting the Phyllosphere Microbiota

(2014) Natacha Bodenhausen et al.   PLoS Genetics

Unraveling the plant microbiome: looking back and future perspectives

(2014) Gabriele Berg et al.   Frontiers in Microbiology

Structure and Functions of the Bacterial Microbiota of Plants

(2013) Davide Bulgarelli et al.   Annual Review of Plant Biology

How distinct are arbuscular mycorrhizal fungal communities associating with grapevines?

(2013) Taylor C. Holland et al.   BIOLOGY AND FERTILITY OF SOILS

Turbulence in Sparse, Organized Vegetative Canopies: A Large-Eddy Simulation Study

(2013) Brian N. Bailey et al.   BOUNDARY-LAYER METEOROLOGY

Seasonal Variability in Bacterial and Fungal Diversity of the Near-Surface Atmosphere

(2013) Robert M. Bowers et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Grapevine bud fertility and number of berries per bunch are determined by water and nitrogen stress around flowering in the previous year

(2013) Nicolas Guilpart et al.   EUROPEAN JOURNAL OF AGRONOMY

Not your ordinary yeast: non-Saccharomycesyeasts in wine production uncovered

(2013) Neil P. Jolly et al.   FEMS YEAST RESEARCH

Mixing of vineyard and oak-tree ecotypes ofSaccharomyces cerevisiaein North American vineyards

(2013) Katie E. Hyma et al.   MOLECULAR ECOLOGY

Bacteria isolated from roots and rhizosphere ofVitis viniferaretard water losses, induce abscisic acid accumulation and synthesis of defense-related terpenes in in vitro cultured grapevine

(2013) María Victoria Salomon et al.   PHYSIOLOGIA PLANTARUM

A Modern Ampelography: A Genetic Basis for Leaf Shape and Venation Patterning in Grape

(2013) D. H. Chitwood et al.   PLANT PHYSIOLOGY

Monitoring Seasonal Changes in Winery-Resident Microbiota

(2013) Nicholas A. Bokulich et al.   PLoS One

Characterization of Epiphytic Bacterial Communities from Grapes, Leaves, Bark and Soil of Grapevine Plants Grown, and Their Relations

(2013) Guilherme Martins et al.   PLoS One

PNAS Plus: From the Cover: Microbial biogeography of wine grapes is conditioned by cultivar, vintage, and climate

(2013) N. A. Bokulich et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Plant growth-promoting rhizobacteria and root system functioning

(2013) Jordan Vacheron et al.   Frontiers in Plant Science

Landscape Epidemiology of Emerging Infectious Diseases in Natural and Human-Altered Ecosystems

(2012) Ross K. Meentemeyer et al.   Annual Review of Phytopathology

Changes in sour rotten grape berry microbiota during ripening and wine fermentation

(2012) André Barata et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Grape berry bacterial microbiota: Impact of the ripening process and the farming system

(2012) Guilherme Martins et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Leaf microbiota in an agroecosystem: spatiotemporal variation in bacterial community composition on field-grown lettuce

(2012) Gurdeep Rastogi et al.   ISME Journal

Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota

(2012) Davide Bulgarelli et al.   NATURE

Microbial life in the phyllosphere

(2012) Julia A. Vorholt   NATURE REVIEWS MICROBIOLOGY

Short-distance dispersal of splashed bacteria of Xanthomonas citri subsp. citri from canker-infected grapefruit tree canopies in turbulent wind

(2012) C. H. Bock et al.   PLANT PATHOLOGY

Brewhouse-Resident Microbiota Are Responsible for Multi-Stage Fermentation of American Coolship Ale

(2012) Nicholas A. Bokulich et al.   PLoS One

Next-Generation Sequencing Reveals Significant Bacterial Diversity of Botrytized Wine

(2012) Nicholas A. Bokulich et al.   PLoS One

The Vineyard Yeast Microbiome, a Mixed Model Microbial Map

(2012) Mathabatha Evodia Setati et al.   PLoS One

Role of social wasps in Saccharomyces cerevisiae ecology and evolution

(2012) I. Stefanini et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The microbial ecology of wine grape berries

(2011) A. Barata et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Geographic delineations of yeast communities and populations associated with vines and wines in New Zealand

(2011) Velimir Gayevskiy et al.   ISME Journal

Endophytes of Grapevine Flowers, Berries, and Seeds: Identification of Cultivable Bacteria, Comparison with Other Plant Parts, and Visualization of Niches of Colonization

(2011) Stéphane Compant et al.   MICROBIAL ECOLOGY

Water deficit improved the capacity of arbuscular mycorrhizal fungi (AMF) for inducing the accumulation of antioxidant compounds in lettuce leaves

(2011) Marouane Baslam et al.   MYCORRHIZA

Drivers of bacterial  -diversity depend on spatial scale

(2011) J. B. H. Martiny et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Deciphering the Rhizosphere Microbiome for Disease-Suppressive Bacteria

(2011) R. Mendes et al.   SCIENCE

Fermenting knowledge: the history of winemaking, science and yeast research

(2010) Paul J Chambers et al.   EMBO REPORTS

Site and plant species are important determinants of the Methylobacterium community composition in the plant phyllosphere

(2010) Claudia Knief et al.   ISME Journal

Spatial variability in airborne bacterial communities across land-use types and their relationship to the bacterial communities of potential source environments

(2010) Robert M Bowers et al.   ISME Journal

Biodiversity and biogeography of the atmosphere

(2010) A. M. Womack et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

A distinct population ofSaccharomyces cerevisiaein New Zealand: evidence for local dispersal by insects and human-aided global dispersal in oak barrels

(2009) Matthew R. Goddard et al.   ENVIRONMENTAL MICROBIOLOGY

Endophytic colonization of Vitis vinifera L. by Burkholderia phytofirmans strain PsJN: from the rhizosphere to inflorescence tissues

(2009) Stéphane Compant et al.   FEMS MICROBIOLOGY ECOLOGY

Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere

(2009) Gabriele Berg et al.   FEMS MICROBIOLOGY ECOLOGY

Land use and climatic factors structure regional patterns in soil microbial communities

(2009) Rebecca E. Drenovsky et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

The diversity of arbuscular mycorrhizal fungi amplified from grapevine roots (Vitis vinifera L.) in Oregon vineyards is seasonally stable and influenced by soil and vine age

(2009) R. Paul Schreiner et al.   MYCOLOGIA

QUANTIFYING THE COMPLEXITIES OFSACCHAROMYCES CEREVISIAE'S ECOSYSTEM ENGINEERING VIA FERMENTATION

(2008) Matthew R. Goddard   ECOLOGY