PNAS Plus: From the Cover: Microbial biogeography of wine grapes is conditioned by cultivar, vintage, and climate

Improved Selection of Internal Transcribed Spacer-Specific Primers Enables Quantitative, Ultra-High-Throughput Profiling of Fungal Communities

(2013) Nicholas A. Bokulich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Facility-Specific “House” Microbiome Drives Microbial Landscapes of Artisan Cheesemaking Plants

(2013) Nicholas A. Bokulich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Induction of grape botrytization during withering affects volatile composition of Recioto di Soave, a “passito”-style wine

(2013) Emanuele Tosi et al.   EUROPEAN FOOD RESEARCH AND TECHNOLOGY

Dispersal in microbes: fungi in indoor air are dominated by outdoor air and show dispersal limitation at short distances

(2013) Rachel I Adams et al.   ISME Journal

Monitoring Seasonal Changes in Winery-Resident Microbiota

(2013) Nicholas A. Bokulich et al.   PLoS One

Exploring the Sources of Bacterial Spoilers in Beefsteaks by Culture-Independent High-Throughput Sequencing

(2013) Francesca De Filippis et al.   PLoS One

GenGIS 2: Geospatial Analysis of Traditional and Genetic Biodiversity, with New Gradient Algorithms and an Extensible Plugin Framework

(2013) Donovan H. Parks et al.   PLoS One

Diversity and heritability of the maize rhizosphere microbiome under field conditions

(2013) J. A. Peiffer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evidence for a persistent microbial seed bank throughout the global ocean

(2013) S. M. Gibbons et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Climate change, wine, and conservation

(2013) L. Hannah et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Influence of Geographic Origin on the Sensory Characteristics and Wine Composition of Vitis vinifera cv. Cabernet Sauvignon Wines from Australia

(2012) Anthony L. Robinson et al.   AMERICAN JOURNAL OF ENOLOGY AND VITICULTURE

Biodiversity in Oscypek, a Traditional Polish Cheese, Determined by Culture-Dependent and -Independent Approaches

(2012) Ángel Alegría et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Next-generation approaches to the microbial ecology of food fermentations

(2012) Nicholas A. Bokulich et al.   BMB Reports

Host Remodeling of the Gut Microbiome and Metabolic Changes during Pregnancy

(2012) Omry Koren et al.   CELL

Changes in sour rotten grape berry microbiota during ripening and wine fermentation

(2012) André Barata et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Investigations of La Rioja Terroir for Wine Production Using 1H NMR Metabolomics

(2012) Eva López-Rituerto et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Predicting bacterial community assemblages using an artificial neural network approach

(2012) Peter E Larsen et al.   NATURE METHODS

Brewhouse-Resident Microbiota Are Responsible for Multi-Stage Fermentation of American Coolship Ale

(2012) Nicholas A. Bokulich et al.   PLoS One

Next-Generation Sequencing Reveals Significant Bacterial Diversity of Botrytized Wine

(2012) Nicholas A. Bokulich et al.   PLoS One

The Vineyard Yeast Microbiome, a Mixed Model Microbial Map

(2012) Mathabatha Evodia Setati et al.   PLoS One

Powdery Mildew Severity as a Function of Canopy Density: Associated Impacts on Sunlight Penetration and Spray Coverage

(2011) C. N. Austin et al.   AMERICAN JOURNAL OF ENOLOGY AND VITICULTURE

Diversity of Candida zemplinina strains from grapes and Italian wines

(2011) Rosanna Tofalo et al.   FOOD MICROBIOLOGY

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

(2011) B. J. Haas et al.   GENOME RESEARCH

The microbial ecology of wine grape berries

(2011) A. Barata et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Geographic delineations of yeast communities and populations associated with vines and wines in New Zealand

(2011) Velimir Gayevskiy et al.   ISME Journal

Metabolic Influence of Botrytis cinerea Infection in Champagne Base Wine

(2011) Young-Shick Hong et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

Switching from a mechanistic model to a continuous model to study at different scales the effect of vine growth on the dynamic of a powdery mildew epidemic

(2010) Jean-Baptiste Burie et al.   ANNALS OF BOTANY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Influence of the farming system and vine variety on yeast communities associated with grape berries

(2010) Gustavo Cordero-Bueso et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

The UNITE database for molecular identification of fungi - recent updates and future perspectives

(2010) Kessy Abarenkov et al.   NEW PHYTOLOGIST

Decision Aids for Multiple-Decision Disease Management as Affected by Weather Input Errors

(2010) W. F. Pfender et al.   PHYTOPATHOLOGY

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Pyrosequencing of Tagged 16S rRNA Gene Amplicons for Rapid Deciphering of the Microbiomes of Fermented Foods Such as Pearl Millet Slurries

(2009) C. Humblot et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Controlled mixed culture fermentation: a new perspective on the use of non-Saccharomyces  yeasts in winemaking

(2009) Maurizio Ciani et al.   FEMS YEAST RESEARCH

Investigation of archaeal and bacterial diversity in fermented seafood using barcoded pyrosequencing

(2009) Seong Woon Roh et al.   ISME Journal

Metabolomic Studies on Geographical Grapes and Their Wines Using1H NMR Analysis Coupled with Multivariate Statistics

(2009) Hong-Seok Son et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Sour rot-damaged grapes are sources of wine spoilage yeasts

(2008) André Barata et al.   FEMS YEAST RESEARCH

Wine yeasts for the future

(2008) Graham H. Fleet   FEMS YEAST RESEARCH