Effects of agricultural management on phyllosphere fungal diversity in vineyards and the association with adjacent native forests

Is microbial terroir related to geographic distance between vineyards?

(2017) Toshiko Miura et al.   Environmental Microbiology Reports

Evaluating the diversity of soil microbial communities in vineyards relative to adjacent native ecosystems

(2016) Taylor C. Holland et al.   APPLIED SOIL ECOLOGY

Associations among Wine Grape Microbiome, Metabolome, and Fermentation Behavior Suggest Microbial Contribution to Regional Wine Characteristics

(2016) Nicholas A. Bokulich et al.   mBio

Foliar fungal communities strongly differ between habitat patches in a landscape mosaic

(2016) Thomas Fort et al.   PeerJ

Are Epiphytic Microbial Communities in the Carposphere of Ripening Grape Clusters (Vitis vinifera L.) Different between Conventional, Organic, and Biodynamic Grapes?

(2016) Elizabeth Kecskeméti et al.   PLoS One

Temporal variation overshadows the response of leaf litter microbial communities to simulated global change

(2015) Kristin L Matulich et al.   ISME Journal

Fitting Linear Mixed-Effects Models Usinglme4

(2015) Douglas Bates et al.   Journal of Statistical Software

Comparison of soil microbial communities inhabiting vineyards and native sclerophyllous forests in central Chile

(2015) Luis E. Castañeda et al.   Ecology and Evolution

Pivotal roles of phyllosphere microorganisms at the interface between plant functioning and atmospheric trace gas dynamics

(2015) Françoise Bringel et al.   Frontiers in Microbiology

Sequence-based Analysis of the Vitis vinifera L. cv Cabernet Sauvignon Grape Must Mycobiome in Three South African Vineyards Employing Distinct Agronomic Systems

(2015) Mathabatha E. Setati et al.   Frontiers in Microbiology

Insights into the bacterial community and its temporal succession during the fermentation of wine grapes

(2015) Hailan Piao et al.   Frontiers in Microbiology

Wine fermentation microbiome: a landscape from different Portuguese wine appellations

(2015) Cátia Pinto et al.   Frontiers in Microbiology

Correction: Soil Bacterial Community Response to Differences in Agricultural Management along with Seasonal Changes in a Mediterranean Region

(2015)   PLoS One

Resilience of the Natural Phyllosphere Microbiota of the Grapevine to Chemical and Biological Pesticides

(2014) Michele Perazzolli et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Plant traits and taxonomy drive host associations in tropical phyllosphere fungal communities

(2014) Steven W. Kembel et al.   Botany

A fungal perspective on conservation biology

(2014) Jacob Heilmann-Clausen et al.   CONSERVATION BIOLOGY

Pyrosequencing reveals regional differences in fruit-associated fungal communities

(2014) Michael W. Taylor et al.   ENVIRONMENTAL MICROBIOLOGY

Influence of the farming system on the epiphytic yeasts and yeast-like fungi colonizing grape berries during the ripening process

(2014) Guilherme Martins et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Unravelling the Diversity of Grapevine Microbiome

(2014) Cátia Pinto et al.   PLoS One

Fungicide Effects on Fungal Community Composition in the Wheat Phyllosphere

(2014) Ida Karlsson et al.   PLoS One

An Illumina metabarcoding pipeline for fungi

(2014) Miklós Bálint et al.   Ecology and Evolution

Baseline survey of the anatomical microbial ecology of an important food plant: Solanum lycopersicum (tomato)

(2013) Andrea R Ottesen et al.   BMC MICROBIOLOGY

Effect of acibenzolar-S-methyl, strobilurins and other fungicide treatments on phylloplane fungi of crops

(2013) Wen-Hsin Chung et al.   JOURNAL OF GENERAL PLANT PATHOLOGY

Fungal community analysis by high-throughput sequencing of amplified markers - a user's guide

(2013) Björn D. Lindahl et al.   NEW PHYTOLOGIST

The Formation and Function of Plant Cuticles

(2013) T. H. Yeats et al.   PLANT PHYSIOLOGY

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Changes in Soil Microbial Community Structure Influenced by Agricultural Management Practices in a Mediterranean Agro-Ecosystem

(2013) Fuensanta García-Orenes et al.   PLoS One

PNAS Plus: From the Cover: Microbial biogeography of wine grapes is conditioned by cultivar, vintage, and climate

(2013) N. A. Bokulich et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Fungal Endophytic Communities in Grapevines (Vitis vinifera L.) Respond to Crop Management

(2012) Michael Pancher et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

PANDAseq: paired-end assembler for illumina sequences

(2012) Andre P Masella et al.   BMC BIOINFORMATICS

Unravelling Soil Fungal Communities from Different Mediterranean Land-Use Backgrounds

(2012) Alberto Orgiazzi et al.   PLoS One

Factors That Affect Large Subunit Ribosomal DNA Amplicon Sequencing Studies of Fungal Communities: Classification Method, Primer Choice, and Error

(2012) Teresita M. Porter et al.   PLoS One

The Vineyard Yeast Microbiome, a Mixed Model Microbial Map

(2012) Mathabatha Evodia Setati et al.   PLoS One

Accurate, Rapid Taxonomic Classification of Fungal Large-Subunit rRNA Genes

(2011) Kuan-Liang Liu et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Organic viticulture and soil quality: A long-term study in Southern France

(2011) Patrice Coll et al.   APPLIED SOIL ECOLOGY

Black fungi and associated bacterial communities in the phyllosphere of grapevine

(2011) Martin Grube et al.   Fungal Biology

The microbial ecology of wine grape berries

(2011) A. Barata et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Microbe domestication and the identification of the wild genetic stock of lager-brewing yeast

(2011) D. Libkind et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Persistent negative effects of pesticides on biodiversity and biological control potential on European farmland

(2010) Flavia Geiger et al.   BASIC AND APPLIED ECOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Scale matters: the impact of organic farming on biodiversity at different spatial scales

(2010) Doreen Gabriel et al.   ECOLOGY LETTERS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

The UNITE database for molecular identification of fungi - recent updates and future perspectives

(2010) Kessy Abarenkov et al.   NEW PHYTOLOGIST

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Does organic farming benefit farmland birds in winter?

(2009) D. E. Chamberlain et al.   Biology Letters

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

(2009) M. N. Price et al.   MOLECULAR BIOLOGY AND EVOLUTION

Natural Populations of Saccharomyces kudriavzevii in Portugal Are Associated with Oak Bark and Are Sympatric with S. cerevisiae and S. paradoxus

(2008) J. P. Sampaio et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Wine yeasts for the future

(2008) Graham H. Fleet   FEMS YEAST RESEARCH

Phyllosphere microbiology with special reference to diversity and plant genotype

(2008) J.M. Whipps et al.   JOURNAL OF APPLIED MICROBIOLOGY